Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g012440.1.1
CDS Infomation

LOW QUALITY:U-box domain-containing protein 4 (AHRD V3.3 *** W9R7F2_9ROSA)
Sequence

ATGGTTTCACTTGAAGATTCTCATTCTCATAACAGTGTTTCTTCTAGTGCCCATTTTGGC
CAAACACGGCCTTATTACTACACCCCACCGCCGCCGTCTTCCATTAAAATCAACCGTGCA
ATGGGTCGTTCTATGAGAACTATCCGGTCAACTATTTTCCGTACTGATTGCTCTGGTTCT
GAACATTCCGGCGCTATTTCTGAAAACATGACAGATTCTGTTATCGATATTCGTCTTGGT
GAGCTTGCGAAGAAACCTCCGGTGAATAACAAAGGTTCTTCTTCCGATGAAGATTATCTA
CAACTTTCTCAAGCTTTCAGTGATTTTTCAGCTTGTAGTAGTGATATCTCCGGCGAGTTA
CAACGATTAGCAAGTGTTCCTGTTTCGGATCTGGTATTAACCCAGAACCCAAATTCTAAA
CCCGAACCTGAACCCGAACCCTGTTTAGGGTTTCTAGAAAGGGAAAAATTTTCGACGGAG
ATAATCGAGAGTATCTCCCCGGAGGATCTTCAACCGACGGTGAAGCTTTGTGTTGACAGC
TTACATTCTCCATCTGTTGCAGTGAAAAGATCAGCGGCAGCTAAATTAAGACTATTAGCA
AAGAATCGAGCTGATAATCGAGCGTTAATCGGAGAATCCGGTGCAATTCCGGTGCTTATA
CCTCTTCTCCGGTGTACGGATCCATGGACACAAGAACACGCAGTTACAGCCCTGTTAAAT
CTCTCACTTCACGAACCGAATAAGGTTTTAATCACTTCCTCCGGAGCTATAAAATCTTTA
ATTTACGTTCTGAAAACCGGCACCGACACTTCGAAACAAAACGCTGCTTGTGGGTTATTA
AGCTTAGCTTTGATTGATGAAAACAAGCTTTCCATTGGTGCTTGTGGTGCTATTCCACCC
TTAGTATGTTTACTTATCAATGGAACAAATAGAGGTAAAAAAGATGCATTAACAACCCTT
TACAAACTTTGTTCAATGAAATTAAATAAAGAGCGAGCTATTAGTGCTGGTGCAGTAAAG
CCACTGGTTGGACTTGTTTGTGAACAGGGGAATGGTTTAGCTGAAAAAGCTATGGTTGTG
TTGAGTTTATTAACAGGGATTGATTCGGGTAAAGAAGCCATTGTTGAAGAAGGTGGAATC
GCTGCACTCGTTGAAGCTATTGAAGATAGTTCTGATAAAGGAAAAGAATTTGCTGTGTTG
ACATTGTTGCAGCTCTGTACGGATAGTGTTAGAAACAGAGGGCTTCTTGTTAGAGAAGGT
GGAATACCTCCTCTTGTTGCCTTGTCTCAGAATGGTACTGCCAAAGCTAAACACAAGGCA
GAAACACTACTAGGATACTTGAGAGAACCAAGACAAGAAGCTTCAACTTCAACTCCTTGA

Peptide Sequence

PEP ID

Solyc11g012440.1.1
PEP Infomation

LOW QUALITY:U-box domain-containing protein 4 (AHRD V3.3 *** W9R7F2_9ROSA)
Sequence

MVSLEDSHSHNSVSSSAHFGQTRPYYYTPPPPSSIKINRAMGRSMRTIRSTIFRTDCSGS
EHSGAISENMTDSVIDIRLGELAKKPPVNNKGSSSDEDYLQLSQAFSDFSACSSDISGEL
QRLASVPVSDLVLTQNPNSKPEPEPEPCLGFLEREKFSTEIIESISPEDLQPTVKLCVDS
LHSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAIPVLIPLLRCTDPWTQEHAVTALLN
LSLHEPNKVLITSSGAIKSLIYVLKTGTDTSKQNAACGLLSLALIDENKLSIGACGAIPP
LVCLLINGTNRGKKDALTTLYKLCSMKLNKERAISAGAVKPLVGLVCEQGNGLAEKAMVV
LSLLTGIDSGKEAIVEEGGIAALVEAIEDSSDKGKEFAVLTLLQLCTDSVRNRGLLVREG
GIPPLVALSQNGTAKAKHKAETLLGYLREPRQEASTSTP*

Transcript Sequence

Transcript ID

Solyc11g012440.1.1
Transcript Infomation

LOW QUALITY:U-box domain-containing protein 4 (AHRD V3.3 *** W9R7F2_9ROSA)
Sequence

ATGGTTTCACTTGAAGATTCTCATTCTCATAACAGTGTTTCTTCTAGTGCCCATTTTGGC
CAAACACGGCCTTATTACTACACCCCACCGCCGCCGTCTTCCATTAAAATCAACCGTGCA
ATGGGTCGTTCTATGAGAACTATCCGGTCAACTATTTTCCGTACTGATTGCTCTGGTTCT
GAACATTCCGGCGCTATTTCTGAAAACATGACAGATTCTGTTATCGATATTCGTCTTGGT
GAGCTTGCGAAGAAACCTCCGGTGAATAACAAAGGTTCTTCTTCCGATGAAGATTATCTA
CAACTTTCTCAAGCTTTCAGTGATTTTTCAGCTTGTAGTAGTGATATCTCCGGCGAGTTA
CAACGATTAGCAAGTGTTCCTGTTTCGGATCTGGTATTAACCCAGAACCCAAATTCTAAA
CCCGAACCTGAACCCGAACCCTGTTTAGGGTTTCTAGAAAGGGAAAAATTTTCGACGGAG
ATAATCGAGAGTATCTCCCCGGAGGATCTTCAACCGACGGTGAAGCTTTGTGTTGACAGC
TTACATTCTCCATCTGTTGCAGTGAAAAGATCAGCGGCAGCTAAATTAAGACTATTAGCA
AAGAATCGAGCTGATAATCGAGCGTTAATCGGAGAATCCGGTGCAATTCCGGTGCTTATA
CCTCTTCTCCGGTGTACGGATCCATGGACACAAGAACACGCAGTTACAGCCCTGTTAAAT
CTCTCACTTCACGAACCGAATAAGGTTTTAATCACTTCCTCCGGAGCTATAAAATCTTTA
ATTTACGTTCTGAAAACCGGCACCGACACTTCGAAACAAAACGCTGCTTGTGGGTTATTA
AGCTTAGCTTTGATTGATGAAAACAAGCTTTCCATTGGTGCTTGTGGTGCTATTCCACCC
TTAGTATGTTTACTTATCAATGGAACAAATAGAGGTAAAAAAGATGCATTAACAACCCTT
TACAAACTTTGTTCAATGAAATTAAATAAAGAGCGAGCTATTAGTGCTGGTGCAGTAAAG
CCACTGGTTGGACTTGTTTGTGAACAGGGGAATGGTTTAGCTGAAAAAGCTATGGTTGTG
TTGAGTTTATTAACAGGGATTGATTCGGGTAAAGAAGCCATTGTTGAAGAAGGTGGAATC
GCTGCACTCGTTGAAGCTATTGAAGATAGTTCTGATAAAGGAAAAGAATTTGCTGTGTTG
ACATTGTTGCAGCTCTGTACGGATAGTGTTAGAAACAGAGGGCTTCTTGTTAGAGAAGGT
GGAATACCTCCTCTTGTTGCCTTGTCTCAGAATGGTACTGCCAAAGCTAAACACAAGGCA
GAAACACTACTAGGATACTTGAGAGAACCAAGACAAGAAGCTTCAACTTCAACTCCTTGA