Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g012290.2.1
CDS Infomation

Upstream activation factor subunit spp27 (AHRD V3.3 *** W9QUP5_9ROSA)
Sequence

ATGGTGTCGGACCAGGAAATAGCTAGAGGTGTAGAGAATTTGCTCCGTCAATCGGACCCT
AACGCCGTTACATCGTTAAACTGCGTCGTACAACAGCTCGGAGCAAAACTTGGACAAGAC
CTTTCACATAAAGCGGAGTTTATCAGTGATCAGATCAATCTTCTCCGATCACAGCCACCG
CAGCTTATTTCTCCTCCGTTGATGGTTAAAGACCATTTTACCCTCTTAAACCACCCACAA
TTTGCTAACACTCAAGCTCAACAGCAGTTTTATTCCCATTTTGCCCTTCAACAACAACAT
CATCATCACCAGCACCAGCAACAGCAGCTCTATTTTCAGCACCATGTACCTCCACTGATG
TCTCCACAGCAGCAGCAGCACCGGCAACCGCAAGTGCAGATACAAGCTCCGGCGCCGGTG
GTGGCGAGAACCGCTGCTGCTCCAGCTCAACATGCGTCGTCAAATGTCCCTTCTGCCCCT
AAGGAAAGTGCTACTTCTGGAACAAAAAGGAGGGGTGGACCAGGTGGTCTTAACAAAGTC
TGTGGTGTTTCACCTGAACTTCAGGCTATTGTTGGTCAACCCGCAATGCCTAGGACAGAG
ATTGTGAAGCAGCTGTGGGTGTACATCAGGAAACACAACTTACAGGATCCTGGTAACAAG
CGGAAGATTATCTGCAACGATGCTCTGCGAGCACTCTTTGAAACAGACTGCACCGACATG
TTCAAGATGAATAAGCTGCTGGCTAAACATATCACAGCACTCGATCCTTCAAAACAAGTT
GATCAAGCTAAAAGATTGAAGGTTGAAGCTGATTCCGTGGCTACTAAGGTTGAACAACCT
GTCTCATCCACTGTTACAATATCTGATGCGCTCGCCAAATTTTTTGAAAGTGAAGAAAAG
GAGATTCTCCAAACAGATGCCGTGAAACGTATTTGGGATTATATAAAGCTTAACCAACTT
GAGGATCCTGTGAATTCTACGATGATCGTGTGTGACCCAAAGCTTCAGGAACTCCTACAA
TGTGAAAGCGTTTCTGCCACAGAATTACCCGAGATGCTGGCAGGTCGTCATTTTGTCTAG

Peptide Sequence

PEP ID

Solyc11g012290.2.1
PEP Infomation

Upstream activation factor subunit spp27 (AHRD V3.3 *** W9QUP5_9ROSA)
Sequence

MVSDQEIARGVENLLRQSDPNAVTSLNCVVQQLGAKLGQDLSHKAEFISDQINLLRSQPP
QLISPPLMVKDHFTLLNHPQFANTQAQQQFYSHFALQQQHHHHQHQQQQLYFQHHVPPLM
SPQQQQHRQPQVQIQAPAPVVARTAAAPAQHASSNVPSAPKESATSGTKRRGGPGGLNKV
CGVSPELQAIVGQPAMPRTEIVKQLWVYIRKHNLQDPGNKRKIICNDALRALFETDCTDM
FKMNKLLAKHITALDPSKQVDQAKRLKVEADSVATKVEQPVSSTVTISDALAKFFESEEK
EILQTDAVKRIWDYIKLNQLEDPVNSTMIVCDPKLQELLQCESVSATELPEMLAGRHFV*

Transcript Sequence

Transcript ID

Solyc11g012290.2.1
Transcript Infomation

Upstream activation factor subunit spp27 (AHRD V3.3 *** W9QUP5_9ROSA)
Sequence

AAATTAACGCCGTTAACTTCGCCGTTACTGTATGAAAGCAAAGCTATGGTGTCGGACCAG
GAAATAGCTAGAGGTGTAGAGAATTTGCTCCGTCAATCGGACCCTAACGCCGTTACATCG
TTAAACTGCGTCGTACAACAGCTCGGAGCAAAACTTGGACAAGACCTTTCACATAAAGCG
GAGTTTATCAGTGATCAGATCAATCTTCTCCGATCACAGCCACCGCAGCTTATTTCTCCT
CCGTTGATGGTTAAAGACCATTTTACCCTCTTAAACCACCCACAATTTGCTAACACTCAA
GCTCAACAGCAGTTTTATTCCCATTTTGCCCTTCAACAACAACATCATCATCACCAGCAC
CAGCAACAGCAGCTCTATTTTCAGCACCATGTACCTCCACTGATGTCTCCACAGCAGCAG
CAGCACCGGCAACCGCAAGTGCAGATACAAGCTCCGGCGCCGGTGGTGGCGAGAACCGCT
GCTGCTCCAGCTCAACATGCGTCGTCAAATGTCCCTTCTGCCCCTAAGGAAAGTGCTACT
TCTGGAACAAAAAGGAGGGGTGGACCAGGTGGTCTTAACAAAGTCTGTGGTGTTTCACCT
GAACTTCAGGCTATTGTTGGTCAACCCGCAATGCCTAGGACAGAGATTGTGAAGCAGCTG
TGGGTGTACATCAGGAAACACAACTTACAGGATCCTGGTAACAAGCGGAAGATTATCTGC
AACGATGCTCTGCGAGCACTCTTTGAAACAGACTGCACCGACATGTTCAAGATGAATAAG
CTGCTGGCTAAACATATCACAGCACTCGATCCTTCAAAACAAGTTGATCAAGCTAAAAGA
TTGAAGGTTGAAGCTGATTCCGTGGCTACTAAGGTTGAACAACCTGTCTCATCCACTGTT
ACAATATCTGATGCGCTCGCCAAATTTTTTGAAAGTGAAGAAAAGGAGATTCTCCAAACA
GATGCCGTGAAACGTATTTGGGATTATATAAAGCTTAACCAACTTGAGGATCCTGTGAAT
TCTACGATGATCGTGTGTGACCCAAAGCTTCAGGAACTCCTACAATGTGAAAGCGTTTCT
GCCACAGAATTACCCGAGATGCTGGCAGGTCGTCATTTTGTCTAGCAATGACTATACGTC
TATATAATTATGGTATTTCAGGTCGTAGCTGCTTTATTGTTCGATGACACGAAGATGTAT
CTTGGTTTTTAGGTAAGTTCAGTTTATTAACATAGTTAGACATCATGATATGTAATTAGA
AATCTGGGTTGATCTGCTCCTGGCCTTATGGCGACAAGTCGTTTTTGTAATCATGCCACG
GCCTTGATCTAGGTTCCCTAGCCTCCTTTGTTCTTGTAAAATCCTGGCGTTCTTGATATA
TACGGATAGTAGGAACATTAACAGATCCTTAGCTTGTTCGAACTCGTTGGAATTAAGATG
TACATGTCAGGTCTACAATATACATTGGAGAGTATATTTCTCTTTCGTCGTTGATATAAA
ATTCCTGTTTTCTTATTGCTTTCGTTGCCACCTGTCAAGGAAATGATCTCCTATGACTAG
TTACAGAGGTGTGACATTATAAACAACGGTATTATGTCTCTTTCCTAATGTTTTTTTTAA
TAGCATATTGATTTTGAGTTGCTCTTTCTATATGATAATCTTCATAGTTCATCACACAAG
AAGCAACTCAGAATTGCTATTGCTACAATAACATATCCAGTATAATTCCACAAGTGGGGT
CTAGAAACTCAGGATCGCTATGAATCAAAAAAGAAAATTACTAGTGAATTACATGAAGTT
CTTAATCAAGTACAGGAAATATACAAATGATAGGATCATAAACGAGATTTTCATAGCCTC
TTTCATCTTTCCCTTCAAAATATCTGGAGTCATCTTTTGAATTGCTCTCACAAGGAAGGA
TGATATTTTCTGGTGAATTGAAATAAAAATACAAAGAATATTATATTAGTACTAGCAAAA
TATGTAGACCATGTATCTATAATTTGTTATAATATATGTATTCCTCGTTTTTTTTTCTAA
GATTCAAACTTCTTAATTTTGATCGTTCATTTGGACATCATCTTTTTGTTTTTTTTAATA
AAACAATTGGAATTTACATAATAAGTACTAAATTTCATAAGAAGGTATGTGAAAAGATTG
GGATCAAAGAATAATTTGTTAGACTCTCGAACATAAAATACTTTTAAAAAAATCTCTCTA
TATATATGAACATATTGTGATCAAAGAATAATTTGGTTGATTCTCGAAAATCAACACTCA
CCAGTCTAAGTGGCTCAATTTGAAGGAATGGCTCCATGATCATCTCCACATTCCTGTCAT
TCGAAGGAATCGTTGGTTCGTATTAATAGATTCATTATTCATCGAATTTTACGTAGATAG
TTCTATTATCTATTGAGTTTCGAATCCTCTTGATTATAAAAACAAGGATAGAGGAAATCT
TGATATGAACATGTTTTTTTCCTCCTCTTTACCTTATCATCATACGACCCTGGTAATAAT
GGCAATGATAGAATCCAAAACCTTTCACAATTGGAATGTGAGTTTCACCGCATTCTGCAA
TAAAAATAAATGATAATATCGAAAAATTCAAATTAATCGATTCAATAAATTTTGAATATG
TATTTTAAAAGAATAAAAGTATAGAATAATGGGCTAACCTAGTTCCCAAGCAACCCCAAC
ATGTGTTCCATCATGTGTAGTAGGTTTGAAAACAAACTCAAAATTGTTATTCCCAAGGAG
TTTTATGATTGATTTGAAGAAATCAATTACTTGCTTCAAGGAAAAAAATTAACAAAAAAA
AAGAGTTTTTTTTTAAATAAATGAGATTTTCGTATATCGACATAAAAGATCATTTCTTCG
AAAATCGAGATAAAAGAGTTAAACATACCTCCTTGCCATAGAAAGTTTGTAAGGATGAGG
CAACATTGCTAATGCATCTACATTCTTCTCCAATTATATCAGACAATTCAATAAGATTTT
TATTTTTAAGTGCTTTATAAAGTTTTTGTACTGTTTCAATAGCTTTTGGATCTTCTTCTG
GATTATTATTTTCTGAATTATCTGATTTATTACATTTCAAAGGGTAAAATAGGCAATTTC
TTTTGGATGAAACTTGGTTTAATTGAATAAAACTAGAAACATATTTTTGGTCATGATGAA
GTTTTAAATTCTTTTTTTGATGAAGAGAAAATTGGGAGTTCTTTTCTTGGAAAATTATTG
GGAATTTTTTATTAGATATCAAGGTAGAAGGGAAAATATTTAGTGAACTCATTTTCAAGA
AAATTGGATGTGTATGAATGTGAAATAATTTGGCTATATATTTATAACACTTTTTTTTTT
GAGAAGGTAACAATATAATACTTTTTTCACAACATGAGTTTCACATATATGAGAGCATAA
AGCATAACATGTTCATTAAGGTTTCAACCATTGCAAGATTGGAATATTTTATAATAGTAT
CATGGCCTAGGGAATAAATATAGCTATATAGGTCAAGTAAAATATAAATTTTAAAACTTA
CCTTTTTTTCTCCATTGATGAGGGAGGGGAAGAGTGTTTGGAATTAACGGCGGGGTCAGA
ATTTAAGAAAAATCAAAATATAAAGAAATAACAATATTTCAACAAGTCTTAATATAGATA
TAAGATACTTAACTAATATAGTGTAATTTTCGAGCAATAATGCGTTGATTGACACATCAT
AGACAAGGATGAT