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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g012000.2.1
CDS Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)
Sequence

ATGGAAGAAGGTGAAACAGGGTTGTTGTTGCAGAGTAACAAAGAAATGGTTTCTTCAGGT
TTTTCAACAAATGAAAGTTCTGAAGAAATCAAGAAGATTAAATCAGCTCTGACATGGGTT
TTTCTTGATCAATCAAATCTATGGAGGGCTGGTCTTTCTTGGTCATTTTTTTCCATTCTT
ACAATTGGGGTTCCATTAGTATCTCACTTTATGTTTGCTTGTTTAACCTGTGATACTATG
CATCAGAGACCTTTTGATGCTCTTGTTCAAGTTTCTTTATCACTTTTTGCAACTTTATCA
TTTGTTAGTCTTTCTAGCTTTGCTCGAAAATACGGGATACGGAAGTTTCTGTTTCTTGAT
AAATTGTATGAAGATAGTGAAAAGGTGCAACAAGGATACACTGAACAGCTACATAGGTCG
ATGAAGATCCTCTCATCTTTTGTCCTCCCTTCTTTTATTGTTGAGAGTATTTACAAGATA
TGGTGGTTTTCCTCCGGGGGAACACAAATTCCTTACCTGTACAATGCTGCTTTGAGCAAT
ATCTTCGTATGCATACTGTTAATAAGCTCCTGGCTTTACCGGATATCAATTTCCTTCCTT
GTATGTGTCCTATTCCGGTTAATATGCTCCCTGCAGATCCTTAGACTGGAAGAGTTTGCT
CAAGTTTTCGAGAAAGAAACTGATGTCTCATCGATCATGATGGAACATCTTCGAATCAGA
AGAAATCTTCGTGTCATTAGTCATCGGTTCAGAGTTTTCATTTTGTCAACTCTCATACTA
GTTACCATAAGCCAGTTTCTTGCGCTGCTTCTTACTACTGAGCCTAGCTCCACAGTGAAC
ATCTTTACAGCAGGTGAACTTGCGTTGAGCTCAATTACTCTGGTAACTGGACTTTTCATG
TGCTTACGTAGTGCAGCAAAGATCACACACAAAGCACAAGCTGTTACATCACTTGCTGCC
AAATGGCATGCTTGTGCAACAATCAGCAGCTTAGATGACATGACTGAGGAAACTCCCATG
GCTCGGTCCGTGGCACCTCAGGTGGTATACCCTATCAATTCCAGTTGGGACACAGACGAG
GAAGGAGACGGAGACGATGTGTTGGACAACACAAATATGGTACCTATTCATGCCAGTACA
ATATCCTACCAAAAGAGACAAGCACTAGTAACATACTTTGAGCATAACAAAGCTGGAATC
ACCGTGTATGGTTTCATGTTAGATCGGACATGGCTTCATACAATTTTCGCGATTCAGCTG
TCTCTTACACTCTGGATACTCAATAAAACAATTGGTATTTCGTAA

Peptide Sequence

PEP ID

Solyc11g012000.2.1
PEP Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)
Sequence

MEEGETGLLLQSNKEMVSSGFSTNESSEEIKKIKSALTWVFLDQSNLWRAGLSWSFFSIL
TIGVPLVSHFMFACLTCDTMHQRPFDALVQVSLSLFATLSFVSLSSFARKYGIRKFLFLD
KLYEDSEKVQQGYTEQLHRSMKILSSFVLPSFIVESIYKIWWFSSGGTQIPYLYNAALSN
IFVCILLISSWLYRISISFLVCVLFRLICSLQILRLEEFAQVFEKETDVSSIMMEHLRIR
RNLRVISHRFRVFILSTLILVTISQFLALLLTTEPSSTVNIFTAGELALSSITLVTGLFM
CLRSAAKITHKAQAVTSLAAKWHACATISSLDDMTEETPMARSVAPQVVYPINSSWDTDE
EGDGDDVLDNTNMVPIHASTISYQKRQALVTYFEHNKAGITVYGFMLDRTWLHTIFAIQL
SLTLWILNKTIGIS*

Transcript Sequence

Transcript ID

Solyc11g012000.2.1
Transcript Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)
Sequence

TCTTAATTAATTGTATATATATAGCTTTTGGTTTAAGTCACATCTTGAAGGATTGATCAT
CTTACTAAATTCCCTAGTGGGGTAATTAAAAAAATTGAATCTTGAAATTTTCTGTATTCA
TTTGATTGATTTGGTGTGTGTTTTGGGTTTTTCATATTATGCCCAACAAGTGTTTGTTGT
AAGTTGTAGCTGAAGAAATTTGTAAAAAATGGAAGAAGGTGAAACAGGGTTGTTGTTGCA
GAGTAACAAAGAAATGGTTTCTTCAGGTTTTTCAACAAATGAAAGTTCTGAAGAAATCAA
GAAGATTAAATCAGCTCTGACATGGGTTTTTCTTGATCAATCAAATCTATGGAGGGCTGG
TCTTTCTTGGTCATTTTTTTCCATTCTTACAATTGGGGTTCCATTAGTATCTCACTTTAT
GTTTGCTTGTTTAACCTGTGATACTATGCATCAGAGACCTTTTGATGCTCTTGTTCAAGT
TTCTTTATCACTTTTTGCAACTTTATCATTTGTTAGTCTTTCTAGCTTTGCTCGAAAATA
CGGGATACGGAAGTTTCTGTTTCTTGATAAATTGTATGAAGATAGTGAAAAGGTGCAACA
AGGATACACTGAACAGCTACATAGGTCGATGAAGATCCTCTCATCTTTTGTCCTCCCTTC
TTTTATTGTTGAGAGTATTTACAAGATATGGTGGTTTTCCTCCGGGGGAACACAAATTCC
TTACCTGTACAATGCTGCTTTGAGCAATATCTTCGTATGCATACTGTTAATAAGCTCCTG
GCTTTACCGGATATCAATTTCCTTCCTTGTATGTGTCCTATTCCGGTTAATATGCTCCCT
GCAGATCCTTAGACTGGAAGAGTTTGCTCAAGTTTTCGAGAAAGAAACTGATGTCTCATC
GATCATGATGGAACATCTTCGAATCAGAAGAAATCTTCGTGTCATTAGTCATCGGTTCAG
AGTTTTCATTTTGTCAACTCTCATACTAGTTACCATAAGCCAGTTTCTTGCGCTGCTTCT
TACTACTGAGCCTAGCTCCACAGTGAACATCTTTACAGCAGGTGAACTTGCGTTGAGCTC
AATTACTCTGGTAACTGGACTTTTCATGTGCTTACGTAGTGCAGCAAAGATCACACACAA
AGCACAAGCTGTTACATCACTTGCTGCCAAATGGCATGCTTGTGCAACAATCAGCAGCTT
AGATGACATGACTGAGGAAACTCCCATGGCTCGGTCCGTGGCACCTCAGGTGGTATACCC
TATCAATTCCAGTTGGGACACAGACGAGGAAGGAGACGGAGACGATGTGTTGGACAACAC
AAATATGGTACCTATTCATGCCAGTACAATATCCTACCAAAAGAGACAAGCACTAGTAAC
ATACTTTGAGCATAACAAAGCTGGAATCACCGTGTATGGTTTCATGTTAGATCGGACATG
GCTTCATACAATTTTCGCGATTCAGCTGTCTCTTACACTCTGGATACTCAATAAAACAAT
TGGTATTTCGTAAATCCCAGTCAACGACAAGGTTTTTACTGTGTGTTGGTAGTTGTACAG
AAATCTGTGCTATCGATACGTAGAGAAACTACTATATACAGTATATATGTATATCCTAAA
TGTCAAAATTTTGCTGATTTTCTTCCTACTTATTGTAATTTCACTGTTGAGTGTTGATAA
TGGTGTCTTTCCTGGATTGTCAAGTTTACTATCTGTTTGTATCAATTTTATAAAATGAAG
TGAAATTTTGTT