Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc11g011300.2.1
CDS Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT2G22620.3)
Sequence	ATGAGACTAGAAGAAACAAAGAAACAAAAAATCCACAAAGAGAACATGGGGAAGAATATG CAACTTATAAGCTTATTATATGTTGTGGAGTTTACCATGGTTGCTTTTACATTGTTGGTA GTTGATGGGCAAAGATTGATAGAATCGCCGATTGTTAGATTGGATATACAAACTAACCAA GTGACGATGAGCAATGGCATTGTAAATGTTACATTATCAACACCATATGGTTTTGTTACG AGCATATCATATGGTGGAGTCAACAACTTACTCGCGACTCAAAATGTTGAAAAAGATAGA GGGTATTGGGATATTTTTTGGAATCGTACAACGTCTAAAAGAGCTCGAAAAAAGTTCTTG GAAAATAATTTCGAGGTCATTATGGATACCGAAAACCAGGCAGAAATATCGTTTAAAAGT ACATGGAATGCTTCTCAATCTGATGAACTTCCATTAAACAGTGACTTAAGGTTTGTGATG TTACGAGACACACCTGGATTTTATACGTATGCTATCGTTGAACGTTTAGAAGGATGGCCC CTTGTATATATCGAAAATTTAAGAGTTGTGTTCAAGCTTCAACAGGACATGTTTCATTAC ATGGCTATCTCGGACGAGAGGCAGAGGATCATGCCAATGCCAGTGGATCGAGAGACGGGA AAGGTACTTGACTACAAAGAAGCTGTTCTTTTGACAAATCCAACTAACCCAAACCTAAAA GGAGAGGTGGATGACAAATACTTTTATGCAAGTGATAACAAAGACGATAGAGTTCATGGA TGGGTAAGTTCTACTAATCCTCCAGTAGGATTTTGGATGATAATTCCTAATGATGAATTT CGTACTGGAGGACCTTACAAACAAGACCTCACTTCACATGTTGGTCCAACTGTACTATCT ATATTTGTAAGTAGACATTTTGCTGGAGATGATCTTGTTATCAAATTTCAACAAGGAGAG CCATGGAAAAAAGTTATTGGCCCTGTATTTCTCTATCTTAACTCAAATTCTTCTGCTATG GACAATCCCATCATACTCTGGGAAGATGCTAAGAGAAGGATGAATCAAGAAGTTGCAAGC TGGCCTTATGATTTTCCAGTTTCAGAAGAGTACATCAAATCTAATCAAAGGGGAATGGTT AGAGGCCAGCTTCTTATTAACGACAGCTCTATGACTTTAGTATCCGCATCCAACGGTTAT ATAGGGTTAGCACCACCAGGAGATGTTGGATCTTGGCAAAGAGAAAACAAAGGTTATCAA TTTTGGACTAAAACAGACGCTATGGGGAATTTCACCATAGAAAATGTCATATCTGGTACA TATAATTTGTATGCAACCGTTCCAGGAATTATGGGGGATTACAAATACACTTTTGATGTA CAAGTTACTCCAGGTTCTAGTATTGATTTAGGGAGTTTGGTTTATAATCCTCCTAGAAAT GGAGCTACACTTTGGGAAATCGGTGTACCAGATCGAACAGCTGCTGAGTTTTTCGTTCCA GCGCCACCTCCAGAATATAACGTGCACGTATACCAAAACAATGTTGAATCAATATTTAGA CAATATGGTTTGTGGGAACAATATAGTATTTTGTATCCTGAAAATGATCTTGTCTACAAT GTTGGGACTAGCAATTACTCAAAAGATTGGTTTTTTGCTCATGTTACTAGGAATATAGGA AACAAGACCTATATATCTACCACATGGAAAATTATATTTGACCTTGAAATTGTTGACAAT GCATCAAATTACACTCTCCAAATAGCTCTTGCAGCAGCTCAAGGAGCTAAATTACAAGTT CGTTTCAACGATGAAAAAGTTGTAGAACCTCATTTTACGACAGGAAAAATAGGGGGAGAT AATGCAATCGCGAGACATGGTATTCATGGATTATATTTTCTTTATAGTATCGAAGTAAAG GGCAATCTACTTGTAAATGGAACAAACACAATTTTTCTTACACAAACAATAGCTACTAAC CCTTTTCAAGGAGTAATGTATGATTATCTTCGTTTAGAAGGACCTCATCAGTGA

Peptide Sequence

PEP ID	Solyc11g011300.2.1
PEP Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT2G22620.3)
Sequence	MRLEETKKQKIHKENMGKNMQLISLLYVVEFTMVAFTLLVVDGQRLIESPIVRLDIQTNQ VTMSNGIVNVTLSTPYGFVTSISYGGVNNLLATQNVEKDRGYWDIFWNRTTSKRARKKFL ENNFEVIMDTENQAEISFKSTWNASQSDELPLNSDLRFVMLRDTPGFYTYAIVERLEGWP LVYIENLRVVFKLQQDMFHYMAISDERQRIMPMPVDRETGKVLDYKEAVLLTNPTNPNLK GEVDDKYFYASDNKDDRVHGWVSSTNPPVGFWMIIPNDEFRTGGPYKQDLTSHVGPTVLS IFVSRHFAGDDLVIKFQQGEPWKKVIGPVFLYLNSNSSAMDNPIILWEDAKRRMNQEVAS WPYDFPVSEEYIKSNQRGMVRGQLLINDSSMTLVSASNGYIGLAPPGDVGSWQRENKGYQ FWTKTDAMGNFTIENVISGTYNLYATVPGIMGDYKYTFDVQVTPGSSIDLGSLVYNPPRN GATLWEIGVPDRTAAEFFVPAPPPEYNVHVYQNNVESIFRQYGLWEQYSILYPENDLVYN VGTSNYSKDWFFAHVTRNIGNKTYISTTWKIIFDLEIVDNASNYTLQIALAAAQGAKLQV RFNDEKVVEPHFTTGKIGGDNAIARHGIHGLYFLYSIEVKGNLLVNGTNTIFLTQTIATN PFQGVMYDYLRLEGPHQ*

Transcript Sequence

Transcript ID	Solyc11g011300.2.1
Transcript Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT2G22620.3)
Sequence	ATGAGACTAGAAGAAACAAAGAAACAAAAAATCCACAAAGAGAACATGGGGAAGAATATG CAACTTATAAGCTTATTATATGTTGTGGAGTTTACCATGGTTGCTTTTACATTGTTGGTA GTTGATGGGCAAAGATTGATAGAATCGCCGATTGTTAGATTGGATATACAAACTAACCAA GTGACGATGAGCAATGGCATTGTAAATGTTACATTATCAACACCATATGGTTTTGTTACG AGCATATCATATGGTGGAGTCAACAACTTACTCGCGACTCAAAATGTTGAAAAAGATAGA GGGTATTGGGATATTTTTTGGAATCGTACAACGTCTAAAAGAGCTCGAAAAAAGTTCTTG GAAAATAATTTCGAGGTCATTATGGATACCGAAAACCAGGCAGAAATATCGTTTAAAAGT ACATGGAATGCTTCTCAATCTGATGAACTTCCATTAAACAGTGACTTAAGGTTTGTGATG TTACGAGACACACCTGGATTTTATACGTATGCTATCGTTGAACGTTTAGAAGGATGGCCC CTTGTATATATCGAAAATTTAAGAGTTGTGTTCAAGCTTCAACAGGACATGTTTCATTAC ATGGCTATCTCGGACGAGAGGCAGAGGATCATGCCAATGCCAGTGGATCGAGAGACGGGA AAGGTACTTGACTACAAAGAAGCTGTTCTTTTGACAAATCCAACTAACCCAAACCTAAAA GGAGAGGTGGATGACAAATACTTTTATGCAAGTGATAACAAAGACGATAGAGTTCATGGA TGGGTAAGTTCTACTAATCCTCCAGTAGGATTTTGGATGATAATTCCTAATGATGAATTT CGTACTGGAGGACCTTACAAACAAGACCTCACTTCACATGTTGGTCCAACTGTACTATCT ATATTTGTAAGTAGACATTTTGCTGGAGATGATCTTGTTATCAAATTTCAACAAGGAGAG CCATGGAAAAAAGTTATTGGCCCTGTATTTCTCTATCTTAACTCAAATTCTTCTGCTATG GACAATCCCATCATACTCTGGGAAGATGCTAAGAGAAGGATGAATCAAGAAGTTGCAAGC TGGCCTTATGATTTTCCAGTTTCAGAAGAGTACATCAAATCTAATCAAAGGGGAATGGTT AGAGGCCAGCTTCTTATTAACGACAGCTCTATGACTTTAGTATCCGCATCCAACGGTTAT ATAGGGTTAGCACCACCAGGAGATGTTGGATCTTGGCAAAGAGAAAACAAAGGTTATCAA TTTTGGACTAAAACAGACGCTATGGGGAATTTCACCATAGAAAATGTCATATCTGGTACA TATAATTTGTATGCAACCGTTCCAGGAATTATGGGGGATTACAAATACACTTTTGATGTA CAAGTTACTCCAGGTTCTAGTATTGATTTAGGGAGTTTGGTTTATAATCCTCCTAGAAAT GGAGCTACACTTTGGGAAATCGGTGTACCAGATCGAACAGCTGCTGAGTTTTTCGTTCCA GCGCCACCTCCAGAATATAACGTGCACGTATACCAAAACAATGTTGAATCAATATTTAGA CAATATGGTTTGTGGGAACAATATAGTATTTTGTATCCTGAAAATGATCTTGTCTACAAT GTTGGGACTAGCAATTACTCAAAAGATTGGTTTTTTGCTCATGTTACTAGGAATATAGGA AACAAGACCTATATATCTACCACATGGAAAATTATATTTGACCTTGAAATTGTTGACAAT GCATCAAATTACACTCTCCAAATAGCTCTTGCAGCAGCTCAAGGAGCTAAATTACAAGTT CGTTTCAACGATGAAAAAGTTGTAGAACCTCATTTTACGACAGGAAAAATAGGGGGAGAT AATGCAATCGCGAGACATGGTATTCATGGATTATATTTTCTTTATAGTATCGAAGTAAAG GGCAATCTACTTGTAAATGGAACAAACACAATTTTTCTTACACAAACAATAGCTACTAAC CCTTTTCAAGGAGTAATGTATGATTATCTTCGTTTAGAAGGACCTCATCAGTGATAAAAT GATTATTTCATGATAATATACTCAATATGATTTCATTAGTGAATTCTGAAGAACGATGAT CATGATCATTATTTATATATATACATTGACAATGTAAAGATTCTTCTACCAAGTTATTGA TTAATGTTAATCATAAAAATTTGCCTATATTTACCTTATGTGACACGAGAAAATATATTT TCCACCGTTGGGGTTAATAGTGAGTAATTTCTCTATTTCAAATGTGGGTAACATTATATT TAATGAACATTTGCACAACACAAATATACTCTGGTCTTAGGTCTATCTTACGTATATCCC AACTAATTTCATAAAAAATCAATTATATTTTATCAATATAAGTATCAAATAACTCTGTTT AGTAAGACCTAAAAAAATTAACTTTTATATGTCCTTTCATAATTCTTTTCTTGTGTGAAA CTTTGCAACATAAAAAGGTTCTTAATTTTATTTTTATTTTTTTAAAAGGTGAGGCATCCA TTATGGATTATAATAAGGTTAATTAAAAGTCACGAGTGGTCCTTTTAATTTGGTATCACA TGATCCCAAAAAAATATAAAAACGTCCACATCTTCATCATAACTTTTTTATTTTAGCACT TTTGATCCCTCAGAATTGTAGCAACAAAAGTGCATTTTATATTCACTTTTTGAATACCTC TGTAAAAGTTATATTAAAGTCACTAGACAATGAAAATGCTCGTTTTGTTTCATATTATTT GATCCTCATACTAAAAATAATTATTTTAATTATAATTAAAGCTTTCTTAAGAGATGCGTA TATCAATAGAGCCAATTTTTGAAACTTTTTAATTAAGGAGAATGACAA