Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g011240.1.1
CDS Infomation

geranylgeranyl pyrophosphate synthase 1
Sequence

ATGGCATTTTTAGCTACCATTTCTGGCCTTGACAATCTGTTCCTTTCTAATACCCCAAAC
AATAACTTTGCTTTCAGTAGAAAACTCCCACCAAGCCAATCTTACAGTTTCCTTCACAAG
AAAATACACGCTAGCGATGTTGCGAACTCGTTCCAAACTTTTCAAGTCAAGGAACGAGAT
GTTTCATCCAAGGCAGAGAAATTCATCTTGCCTGAGTTTGAGTTTCAAGAATACATGGTA
ACGAAGGCAATCAAGGTAAACAAAGCACTAGATGAAGCAATACCAATGCAAGAGCCTATA
AAAGTTCATGAAGCCATGAGGTACTCACTTCTAGCTGGAGGAAAACGTGTCCGGCCGATC
CTCTGCATGGCTTCTTGTGAAGTTGTAGGAGGGGATGAATCCTTAGCTATACCTGCAGCT
TGCGCAGTTGAGATGATCCATACCATGTCACTCGTCCATGATGATCTTCCCTGCATGGAC
AACGATGATCTACGTCGTGGCAAGCCCACGAACCATAAGGTTTTTGGAGAAAACACTGCA
GTTCTTGCAGGGGATGCACTTTTATCTTTGGCCTTTGAACATGTGGCTACCAAGACTCAG
AATGTGCCACCCCAAAGAGTGGTCCAAGCCATTGGGGAATTGGGTTCAGCTGTTGGCTCA
GAAGGGCTCGTGGCAGGGCAAATTGTGGACTTGGCGAGTGAAGGAAAACAAGTTAGCCTA
ACTGAACTGGAGTACATTCACCACCATAAGACGGCGAAGCTTTTGGAGGCTGCTGTGGTT
TGTGGGGCAATAATGGGGGGAGGAAATGAGGTTGATGTGGAGCGAATGAGGAGCTATGCT
AGGTGCATTGGACTGTTATTTCAAGTGGTAGATGATATTCTTGATGTTACCAAGTCATCA
GATGAGCTGGGAAAGACAGCGGGTAAGGACCTAATAACAGATAAGGCTACATATCCTAAG
TTGATGGGGCTAGAAAAGGCTCGACAATATGCCGGTGAGCTGATGGCTAAGGCCATGAAT
GAGCTAAGCTACTTCGACTATGCAAAGGCAGCACCTCTTTATCATATTGCTAGTTATATT
GCAAATCGACAGAATTGA

Peptide Sequence

PEP ID

Solyc11g011240.1.1
PEP Infomation

geranylgeranyl pyrophosphate synthase 1
Sequence

MAFLATISGLDNLFLSNTPNNNFAFSRKLPPSQSYSFLHKKIHASDVANSFQTFQVKERD
VSSKAEKFILPEFEFQEYMVTKAIKVNKALDEAIPMQEPIKVHEAMRYSLLAGGKRVRPI
LCMASCEVVGGDESLAIPAACAVEMIHTMSLVHDDLPCMDNDDLRRGKPTNHKVFGENTA
VLAGDALLSLAFEHVATKTQNVPPQRVVQAIGELGSAVGSEGLVAGQIVDLASEGKQVSL
TELEYIHHHKTAKLLEAAVVCGAIMGGGNEVDVERMRSYARCIGLLFQVVDDILDVTKSS
DELGKTAGKDLITDKATYPKLMGLEKARQYAGELMAKAMNELSYFDYAKAAPLYHIASYI
ANRQN*

Transcript Sequence

Transcript ID

Solyc11g011240.1.1
Transcript Infomation

geranylgeranyl pyrophosphate synthase 1
Sequence

ATGGCATTTTTAGCTACCATTTCTGGCCTTGACAATCTGTTCCTTTCTAATACCCCAAAC
AATAACTTTGCTTTCAGTAGAAAACTCCCACCAAGCCAATCTTACAGTTTCCTTCACAAG
AAAATACACGCTAGCGATGTTGCGAACTCGTTCCAAACTTTTCAAGTCAAGGAACGAGAT
GTTTCATCCAAGGCAGAGAAATTCATCTTGCCTGAGTTTGAGTTTCAAGAATACATGGTA
ACGAAGGCAATCAAGGTAAACAAAGCACTAGATGAAGCAATACCAATGCAAGAGCCTATA
AAAGTTCATGAAGCCATGAGGTACTCACTTCTAGCTGGAGGAAAACGTGTCCGGCCGATC
CTCTGCATGGCTTCTTGTGAAGTTGTAGGAGGGGATGAATCCTTAGCTATACCTGCAGCT
TGCGCAGTTGAGATGATCCATACCATGTCACTCGTCCATGATGATCTTCCCTGCATGGAC
AACGATGATCTACGTCGTGGCAAGCCCACGAACCATAAGGTTTTTGGAGAAAACACTGCA
GTTCTTGCAGGGGATGCACTTTTATCTTTGGCCTTTGAACATGTGGCTACCAAGACTCAG
AATGTGCCACCCCAAAGAGTGGTCCAAGCCATTGGGGAATTGGGTTCAGCTGTTGGCTCA
GAAGGGCTCGTGGCAGGGCAAATTGTGGACTTGGCGAGTGAAGGAAAACAAGTTAGCCTA
ACTGAACTGGAGTACATTCACCACCATAAGACGGCGAAGCTTTTGGAGGCTGCTGTGGTT
TGTGGGGCAATAATGGGGGGAGGAAATGAGGTTGATGTGGAGCGAATGAGGAGCTATGCT
AGGTGCATTGGACTGTTATTTCAAGTGGTAGATGATATTCTTGATGTTACCAAGTCATCA
GATGAGCTGGGAAAGACAGCGGGTAAGGACCTAATAACAGATAAGGCTACATATCCTAAG
TTGATGGGGCTAGAAAAGGCTCGACAATATGCCGGTGAGCTGATGGCTAAGGCCATGAAT
GAGCTAAGCTACTTCGACTATGCAAAGGCAGCACCTCTTTATCATATTGCTAGTTATATT
GCAAATCGACAGAATTGA