Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc11g008770.2.1
CDS Infomation	LETM1 and EF-hand domain-containing protein 1 (AHRD V3.3 *** A0A061EI71_THECC)
Sequence	ATGGCTTCAAGAGCAATATTGAGAAGGAAGAGGAACCTCTTTGATTCTACTCCGAAACCT CACACCTTCATTCGAGCTTTTTTGAGCTATGAGAACTGGGGATCATCTAAGGCGTCTAAT TCTTGGGATTGGCGCTCTATGGTAACTCATCAACCTCAGAATGCAGATAACAGAAATGAA GGAAGTTCAAGTCCGTCTACCAAAGATGAGTTACTAAAAGTTTGGGGAAAGCATGTCCTA CTCAACTCATCTGAAATTCCAGTCTTGGGTTTGAGAGTAGGAAGATGCGGGTCTCTTTCT ACTTTGGGGGCCAGATGGATAATACACCAACAACAATATTCGACAGCTGCAGCAGGTCAA CCTGATTTTGGTAAAGGAAATGATAAGGATGCAGAACCAGCGGTTAAACAGAAGAAAGAA GCTTCACCAGAAGAATGTGATGAAGCAGTTGAGGATTTAACCATGGCCAAAGCCAAAGCA AAATCCAAACAGCTGCAAGATTCGCAGATCAGTATTAAAGCTGTAGTAAAGAAAATTTGG GCAGTGTTATTAGGGATTGGTCCTGCTTTGAGAGCCGTTGCTTCAATGAGCAGGGAAGAC TGGGCAAAGAAGATCCGGCACTGGAAGGATGAATTTAAATCAACAATGCAACACTATTGG TTGGGTACCAAACTGCTTTGGGCTGATGTTAGGATATGTTCGAGGCTCTTGTTGAAAACA GCCAAGGGGAAGAGTCTTTCCAGGAGGGAAAGGCAACAACTAACACGGACAACAGCTGAT ATTTTTAGGCTGGTTCCTGTTGCAGTGTTTATTATTGTTCCATTTATGGAGCTCTTGTTG CCGGTATTCCTGGCTTTGTTTCCCAACATGCTGCCATCAACCTTCCAAGATAAGATGAAA GAAGAGGAGGCTCTGAAAAGGAAGCTGAATGCTAGGATTGAATATGCAAAGTTTCTACAA GAAACAGTCAAAGAGATGGCAAAGGAAGTTAAAAACTCTCGAAGCGGAGAACTAAAGAAT ACAGCTGAGGATCTTGATGAATTCATGAATAAGGTCAGAAGGGGTGCTAGTGTATCTAAT GAGGAAATTTTAGGATTCGCCAAGCTTTTCAATGATGAGCTCACACTGGATAATATCAGC AGACCGAGGTTGGTGAATATGTGCAAATATATGGGTATTAACCCCTTTGGAACTGATGCA TACTTGCGCTTCATGCTTAGAAAGAGGCTCCAAAAGATCAAGAACGATGACAAGATGATT CAAGCAGAGGGTGTTGAGTCCCTTTCAGAGGACGAGCTCCGTCAAGCCTGTCGAGAACGA GGCTTACTTGGATTACTCTCAGTAGAAGAAATGCGACAGCAGTTGCGAGATTGGCTGGAC TTATCACTCAACCATTCAGTGCCATCTTCTTTATTAATCCTTTCTAGAGCCTTCACAGTG TCAGGCAAAGTAAAACCAGAGGAAGCTGTTCAAGCTACACTTTCATCACTGCCAGATGAG GTGGTCGACACTGTTCAAGTTACATCTTTGCCATCTGAAGATGCTCTTGCTGAAAAGAAG AGAAAGCTAGAGTTCTTAGAAATGGAGGAAGAGCTCATCAAGGAGGAGGAAGAGGAAGAA GAAGAAGAGCAGGCTAAGATGAAAGATAAGCAGAAGGATGTAGCTTTGGAAGAGATGACT CTTGCAACAGCTAAAGAAGCAGAAGAACTAAAAAAAACAAAAACTTTGGATCAACAAGAG CAGCTCTGTGAGCTCAGTCGTGCGATTGCTGTTCTATCATCGGCTTCTTCCGTAAGCCTG GAGCGTCATGAGTTTTTGAGACTTGTCAAAAAAGAGATTGAGTTGTACAACAGCATGGTG GATAAAGGCGGCCCTGAAGGTGAAGAAGAAGTCCGGAAGGCATATAAAGCAGCTAGGGAG GAGGATAATGACCACACTCAAGAAAGGACTGTGGATGATAAAGTTTCTTCAGCACTTATT AATAGGGTTGATGTAATGCTCCAAAAACTTGAAAAGGAAATTGATGACGTGGATGCCAAG ATTGGTGATCGTTGGCGGTTACTGGATAGGGATTATGATGGAAAAGTCACTCCAGAGGAG GTGGCATCTGCTGCTTCATACCTCAAGGATACATTAGCGAAGGAGGGTATTCAGGAGCTC ATAACCAACCTTTCCAAGGACAGAGAAGGAAAAATCCTTGTCCAAGATCTGGTGAAGTTA GCCAGTGAAATAGAACATGCTGAAGAGGAGGAGGAAACTACAGAAGAGGAAAAAGCTCAA AAATAA

Peptide Sequence

PEP ID	Solyc11g008770.2.1
PEP Infomation	LETM1 and EF-hand domain-containing protein 1 (AHRD V3.3 *** A0A061EI71_THECC)
Sequence	MASRAILRRKRNLFDSTPKPHTFIRAFLSYENWGSSKASNSWDWRSMVTHQPQNADNRNE GSSSPSTKDELLKVWGKHVLLNSSEIPVLGLRVGRCGSLSTLGARWIIHQQQYSTAAAGQ PDFGKGNDKDAEPAVKQKKEASPEECDEAVEDLTMAKAKAKSKQLQDSQISIKAVVKKIW AVLLGIGPALRAVASMSREDWAKKIRHWKDEFKSTMQHYWLGTKLLWADVRICSRLLLKT AKGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFMELLLPVFLALFPNMLPSTFQDKMK EEEALKRKLNARIEYAKFLQETVKEMAKEVKNSRSGELKNTAEDLDEFMNKVRRGASVSN EEILGFAKLFNDELTLDNISRPRLVNMCKYMGINPFGTDAYLRFMLRKRLQKIKNDDKMI QAEGVESLSEDELRQACRERGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTV SGKVKPEEAVQATLSSLPDEVVDTVQVTSLPSEDALAEKKRKLEFLEMEEELIKEEEEEE EEEQAKMKDKQKDVALEEMTLATAKEAEELKKTKTLDQQEQLCELSRAIAVLSSASSVSL ERHEFLRLVKKEIELYNSMVDKGGPEGEEEVRKAYKAAREEDNDHTQERTVDDKVSSALI NRVDVMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVASAASYLKDTLAKEGIQEL ITNLSKDREGKILVQDLVKLASEIEHAEEEEETTEEEKAQK*

Transcript Sequence

Transcript ID	Solyc11g008770.2.1
Transcript Infomation	LETM1 and EF-hand domain-containing protein 1 (AHRD V3.3 *** A0A061EI71_THECC)
Sequence	ATGGCTTCAAGAGCAATATTGAGAAGGAAGAGGAACCTCTTTGATTCTACTCCGAAACCT CACACCTTCATTCGAGCTTTTTTGAGCTATGAGAACTGGGGATCATCTAAGGCGTCTAAT TCTTGGGATTGGCGCTCTATGGTAACTCATCAACCTCAGAATGCAGATAACAGAAATGAA GGAAGTTCAAGTCCGTCTACCAAAGATGAGTTACTAAAAGTTTGGGGAAAGCATGTCCTA CTCAACTCATCTGAAATTCCAGTCTTGGGTTTGAGAGTAGGAAGATGCGGGTCTCTTTCT ACTTTGGGGGCCAGATGGATAATACACCAACAACAATATTCGACAGCTGCAGCAGGTCAA CCTGATTTTGGTAAAGGAAATGATAAGGATGCAGAACCAGCGGTTAAACAGAAGAAAGAA GCTTCACCAGAAGAATGTGATGAAGCAGTTGAGGATTTAACCATGGCCAAAGCCAAAGCA AAATCCAAACAGCTGCAAGATTCGCAGATCAGTATTAAAGCTGTAGTAAAGAAAATTTGG GCAGTGTTATTAGGGATTGGTCCTGCTTTGAGAGCCGTTGCTTCAATGAGCAGGGAAGAC TGGGCAAAGAAGATCCGGCACTGGAAGGATGAATTTAAATCAACAATGCAACACTATTGG TTGGGTACCAAACTGCTTTGGGCTGATGTTAGGATATGTTCGAGGCTCTTGTTGAAAACA GCCAAGGGGAAGAGTCTTTCCAGGAGGGAAAGGCAACAACTAACACGGACAACAGCTGAT ATTTTTAGGCTGGTTCCTGTTGCAGTGTTTATTATTGTTCCATTTATGGAGCTCTTGTTG CCGGTATTCCTGGCTTTGTTTCCCAACATGCTGCCATCAACCTTCCAAGATAAGATGAAA GAAGAGGAGGCTCTGAAAAGGAAGCTGAATGCTAGGATTGAATATGCAAAGTTTCTACAA GAAACAGTCAAAGAGATGGCAAAGGAAGTTAAAAACTCTCGAAGCGGAGAACTAAAGAAT ACAGCTGAGGATCTTGATGAATTCATGAATAAGGTCAGAAGGGGTGCTAGTGTATCTAAT GAGGAAATTTTAGGATTCGCCAAGCTTTTCAATGATGAGCTCACACTGGATAATATCAGC AGACCGAGGTTGGTGAATATGTGCAAATATATGGGTATTAACCCCTTTGGAACTGATGCA TACTTGCGCTTCATGCTTAGAAAGAGGCTCCAAAAGATCAAGAACGATGACAAGATGATT CAAGCAGAGGGTGTTGAGTCCCTTTCAGAGGACGAGCTCCGTCAAGCCTGTCGAGAACGA GGCTTACTTGGATTACTCTCAGTAGAAGAAATGCGACAGCAGTTGCGAGATTGGCTGGAC TTATCACTCAACCATTCAGTGCCATCTTCTTTATTAATCCTTTCTAGAGCCTTCACAGTG TCAGGCAAAGTAAAACCAGAGGAAGCTGTTCAAGCTACACTTTCATCACTGCCAGATGAG GTGGTCGACACTGTTCAAGTTACATCTTTGCCATCTGAAGATGCTCTTGCTGAAAAGAAG AGAAAGCTAGAGTTCTTAGAAATGGAGGAAGAGCTCATCAAGGAGGAGGAAGAGGAAGAA GAAGAAGAGCAGGCTAAGATGAAAGATAAGCAGAAGGATGTAGCTTTGGAAGAGATGACT CTTGCAACAGCTAAAGAAGCAGAAGAACTAAAAAAAACAAAAACTTTGGATCAACAAGAG CAGCTCTGTGAGCTCAGTCGTGCGATTGCTGTTCTATCATCGGCTTCTTCCGTAAGCCTG GAGCGTCATGAGTTTTTGAGACTTGTCAAAAAAGAGATTGAGTTGTACAACAGCATGGTG GATAAAGGCGGCCCTGAAGGTGAAGAAGAAGTCCGGAAGGCATATAAAGCAGCTAGGGAG GAGGATAATGACCACACTCAAGAAAGGACTGTGGATGATAAAGTTTCTTCAGCACTTATT AATAGGGTTGATGTAATGCTCCAAAAACTTGAAAAGGAAATTGATGACGTGGATGCCAAG ATTGGTGATCGTTGGCGGTTACTGGATAGGGATTATGATGGAAAAGTCACTCCAGAGGAG GTGGCATCTGCTGCTTCATACCTCAAGGATACATTAGCGAAGGAGGGTATTCAGGAGCTC ATAACCAACCTTTCCAAGGACAGAGAAGGAAAAATCCTTGTCCAAGATCTGGTGAAGTTA GCCAGTGAAATAGAACATGCTGAAGAGGAGGAGGAAACTACAGAAGAGGAAAAAGCTCAA AAATAAAACCCATACGACGATAGTTTTGATCTGTTTACTGCTAGCCATGTTAGTAACCAA CCTTCCATTTTATACTAAACGCGTTGTGCTTGGTACCTCATCCTTCCAGGTATCAACATA AATCCTTATGTGACTGCTTGTAGTCGAATATATATATGCGATTGATAAACTGCACTCAGA TTCAATTTCAGAATAGCTAAAATGTGGATGCATATGGCTGTGTCAAACACTTGAATATTC ATCTCTACCCTGCCTCACCCTCAGCTTTATATTGTATCTCTACAGTGGAGAACATAGTTA CCGGAGTAACTTGAAAAACCGCGATTCGAGTTTTTATCTCTTAAGGTTTACGATCATAAG ATTTGTGAAGAGTTTGGTTATGGTTTTTTAATCTTTCAGAAGGAAGTCTGTATGTTCTGT TTCAGTTTTGGGATAAGTGTAGCTTCTTTTTTTTTGACTGTTTTTACAGCAACTTCTATT TGTGAATTCACCTCATCCTGAGTGAACTAATATATTTATCAAATTAATTATATCACTTCT ATAAGTAAAACAAAAAAATTT