Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc11g008760.2.1
CDS Infomation	Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061DRT6_THECC)
Sequence	ATGGCCACTAAAGTTCAGAGAAATCTCGCAGTTCTGTACAATAAAAGACAATTCTCCGTC GCCGGAGCTTCATACACCGGTACAACCTCCGCGGCGAAGACGGCGGCGGCATCAAAGGTC GGAAATTTAATCGTGGTCGCTTCAATTGCAAAAGCTTTGATAAAGCGAGGAGGAACACGT AACCTAGAAAAGTACGGCGATTTAATTCCCTTATCAGAAAGCCTAGTCCTTCAAGTTCTC CGCCGCAACAATTTGGATGCTGAAAAGAAATTAGACTTCTTCAAATGGTGTTCTCTCAGG CCTAATTTCAAACACTCTACTGAAACATACTCTCAAATGTTCAAATGCATTTGCTATAGT CGCAATCACCGGGAAGATGTTTTTGTATTGTTAAACTCAATGAAGGATGATGAAGTGTTG CTTAATTCGGCCACATTTAAGTTACTACTCGACTCGTTTACTCGAACTGGTAATTTCGAT TCAGCTCTTGAGATTTTGGAGTTTGTAGAAGGAGATTTGGCTAACTCTAGTTGTTTAAGT CCTGATGTGTATAATTCTGTACTTATTGCTCTTGTACAAAAGAATCAAGTTAATTTAGCT TTGTCGATTTTTCTTAAATTGTTGGAAACTAATGATGGGAATAGCATTGGGGTTAGTAGT GCCATTGCCTGTAATGAGTTGCTTGTTGGCCTTAAGAGGGGTAATATGAGAGCTGAGTTT AAACAAGTTTTTGATAAGCTTAGGGGAGGGAATGTGTTTCCGTTCGATAGATGGGGGTAT AATATATGCATTCATGCGTTCGGGTGTTGGGGGGATTTGTCTAGGTCTTTGAGTCTTTTT AAAGAAATGAAGGAAAGGGGAAGTTGCTTTAGTCCCGACTTGTGTACTTATAATAGCTTG ATTCATGTGCTTTGCTTGCTCGGAAAGGTTAAGGATGCTTTTGTTGTGTGGGAGGAATTA AAGGGATCATCGGGGTTGGAACCTGATGCTTATACCTACCGAATCGTTATACAAGGTTGC TCTAAGGCTTACCTGATAAATGATGCGATAAAAGTGTTTACTGAGATGCAGTACAATGGC ATACGTCCTGATACTATAGTATATAACTCCCTCTTAGATGGACTACTCAAGGTAAGAAAG TTGACAGATGCATGCAATTTATTCCAGAAAATGATTGAAGATGATGGTGTACGAGCCAGT TGTTGGACCTATAATATTCTTATTGATGGCTTGTTCAAGAATGGGAGGGCTTTGGCTGCT TATACCCTATTTTGTGATTTGAAGAAGAAAAGTAATAATTTCGTGGATGGGGTTAGTTAT AGCATTGTCATTTTACATCTTTGTCGAGAAGATAGGCTTGACGAAGCACTGAAGTTGGTG GAAGAGATGGAAGCTAGAGGGTTTACTGTTGATTTGGTTACTATAACTTCTCTTTTGATT GCAATCTACAGGGAGGGACATTGGGACTATACAGAGAGGCTTATGAAGCACATCAGGGAT AGCAATTTAGTTCCAATTATTATCAGATGGAAAGACAGTATGGAGGCTACAATGAAAGCT CCACAGAGCAGAGAAAAGGATTTTACACCCATTTTTCCATCCAACCGGAACTTTGGTGAT ATTCTAGGCCTAGAAAACTTAACAGACGCTGAGACGGATATTGCCCTTGGGGCAGAGGAA GCTGAGATACACTATCAAGAAAGTGATCCGTGGTCATCATCGCCATATATGGACTTGCTG GCTGATAAAGTTAGCTCCCAAAGTAATTCTTCAAGAACGTTCTCTCTTACTGGAGGAAAA CGAATAGACACTAAAAGTGCAGATTCTTTTGATATTGACATGGTGAATACCTTCTTGTCG ATATTTTTGGCCAAAGGAAAATTGAGCATGGCTTGTAAATTATTTGAAATTTTCACCGAC ATGGGCGCTGACCCTGTTAGTTATACTTACAATTCTATGATGAGTTCATTTGTCAAGAAG GGATATTTCAATGAAGCATGGGGCGTTTTACAGGAAATGGGCGAGAAAGTTTGCCCTTCT GATGTAGCAACATACAATGTCATAATCCAAGGATTGGGAAAGATGGGAAGGGCTGATCTT GCTGATGCCGTACTAGACAAACTAATGAAGCAGGGAGGTTACCTTGACATTGTAATGTAT AACACCTTGATTAATGCCCTCGGGAAGGCTGGCAGAATCGAGGAAGTAAATAAGCTTTTC CAGCAGATGAAAGATAGTGGAATAAATCCAGATGTCGTCACTTACAATACACTAATTGAA GTTCATGCCAAGGCGGGCCAGCTTAAGCAATCTTATAAGTTTTTAAGGATGATGTTGGAA GCAGGTTGTGCGCCGAACCAGGTAACTGATACTACTTTGGACTTTCTGGAGAAGGAGATT GAAAAATTGAGATACCAAAAGGCATCCATGAAACGCCCAAATGAGGCCCGTGAAGAAGTT GAATTCATAGAACTTGGAGTGTCTAGCTTTGATAGCAAAAGTTAG

Peptide Sequence

PEP ID	Solyc11g008760.2.1
PEP Infomation	Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061DRT6_THECC)
Sequence	MATKVQRNLAVLYNKRQFSVAGASYTGTTSAAKTAAASKVGNLIVVASIAKALIKRGGTR NLEKYGDLIPLSESLVLQVLRRNNLDAEKKLDFFKWCSLRPNFKHSTETYSQMFKCICYS RNHREDVFVLLNSMKDDEVLLNSATFKLLLDSFTRTGNFDSALEILEFVEGDLANSSCLS PDVYNSVLIALVQKNQVNLALSIFLKLLETNDGNSIGVSSAIACNELLVGLKRGNMRAEF KQVFDKLRGGNVFPFDRWGYNICIHAFGCWGDLSRSLSLFKEMKERGSCFSPDLCTYNSL IHVLCLLGKVKDAFVVWEELKGSSGLEPDAYTYRIVIQGCSKAYLINDAIKVFTEMQYNG IRPDTIVYNSLLDGLLKVRKLTDACNLFQKMIEDDGVRASCWTYNILIDGLFKNGRALAA YTLFCDLKKKSNNFVDGVSYSIVILHLCREDRLDEALKLVEEMEARGFTVDLVTITSLLI AIYREGHWDYTERLMKHIRDSNLVPIIIRWKDSMEATMKAPQSREKDFTPIFPSNRNFGD ILGLENLTDAETDIALGAEEAEIHYQESDPWSSSPYMDLLADKVSSQSNSSRTFSLTGGK RIDTKSADSFDIDMVNTFLSIFLAKGKLSMACKLFEIFTDMGADPVSYTYNSMMSSFVKK GYFNEAWGVLQEMGEKVCPSDVATYNVIIQGLGKMGRADLADAVLDKLMKQGGYLDIVMY NTLINALGKAGRIEEVNKLFQQMKDSGINPDVVTYNTLIEVHAKAGQLKQSYKFLRMMLE AGCAPNQVTDTTLDFLEKEIEKLRYQKASMKRPNEAREEVEFIELGVSSFDSKS*

Transcript Sequence

Transcript ID	Solyc11g008760.2.1
Transcript Infomation	Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061DRT6_THECC)
Sequence	ATGGCCACTAAAGTTCAGAGAAATCTCGCAGTTCTGTACAATAAAAGACAATTCTCCGTC GCCGGAGCTTCATACACCGGTACAACCTCCGCGGCGAAGACGGCGGCGGCATCAAAGGTC GGAAATTTAATCGTGGTCGCTTCAATTGCAAAAGCTTTGATAAAGCGAGGAGGAACACGT AACCTAGAAAAGTACGGCGATTTAATTCCCTTATCAGAAAGCCTAGTCCTTCAAGTTCTC CGCCGCAACAATTTGGATGCTGAAAAGAAATTAGACTTCTTCAAATGGTGTTCTCTCAGG CCTAATTTCAAACACTCTACTGAAACATACTCTCAAATGTTCAAATGCATTTGCTATAGT CGCAATCACCGGGAAGATGTTTTTGTATTGTTAAACTCAATGAAGGATGATGAAGTGTTG CTTAATTCGGCCACATTTAAGTTACTACTCGACTCGTTTACTCGAACTGGTAATTTCGAT TCAGCTCTTGAGATTTTGGAGTTTGTAGAAGGAGATTTGGCTAACTCTAGTTGTTTAAGT CCTGATGTGTATAATTCTGTACTTATTGCTCTTGTACAAAAGAATCAAGTTAATTTAGCT TTGTCGATTTTTCTTAAATTGTTGGAAACTAATGATGGGAATAGCATTGGGGTTAGTAGT GCCATTGCCTGTAATGAGTTGCTTGTTGGCCTTAAGAGGGGTAATATGAGAGCTGAGTTT AAACAAGTTTTTGATAAGCTTAGGGGAGGGAATGTGTTTCCGTTCGATAGATGGGGGTAT AATATATGCATTCATGCGTTCGGGTGTTGGGGGGATTTGTCTAGGTCTTTGAGTCTTTTT AAAGAAATGAAGGAAAGGGGAAGTTGCTTTAGTCCCGACTTGTGTACTTATAATAGCTTG ATTCATGTGCTTTGCTTGCTCGGAAAGGTTAAGGATGCTTTTGTTGTGTGGGAGGAATTA AAGGGATCATCGGGGTTGGAACCTGATGCTTATACCTACCGAATCGTTATACAAGGTTGC TCTAAGGCTTACCTGATAAATGATGCGATAAAAGTGTTTACTGAGATGCAGTACAATGGC ATACGTCCTGATACTATAGTATATAACTCCCTCTTAGATGGACTACTCAAGGTAAGAAAG TTGACAGATGCATGCAATTTATTCCAGAAAATGATTGAAGATGATGGTGTACGAGCCAGT TGTTGGACCTATAATATTCTTATTGATGGCTTGTTCAAGAATGGGAGGGCTTTGGCTGCT TATACCCTATTTTGTGATTTGAAGAAGAAAAGTAATAATTTCGTGGATGGGGTTAGTTAT AGCATTGTCATTTTACATCTTTGTCGAGAAGATAGGCTTGACGAAGCACTGAAGTTGGTG GAAGAGATGGAAGCTAGAGGGTTTACTGTTGATTTGGTTACTATAACTTCTCTTTTGATT GCAATCTACAGGGAGGGACATTGGGACTATACAGAGAGGCTTATGAAGCACATCAGGGAT AGCAATTTAGTTCCAATTATTATCAGATGGAAAGACAGTATGGAGGCTACAATGAAAGCT CCACAGAGCAGAGAAAAGGATTTTACACCCATTTTTCCATCCAACCGGAACTTTGGTGAT ATTCTAGGCCTAGAAAACTTAACAGACGCTGAGACGGATATTGCCCTTGGGGCAGAGGAA GCTGAGATACACTATCAAGAAAGTGATCCGTGGTCATCATCGCCATATATGGACTTGCTG GCTGATAAAGTTAGCTCCCAAAGTAATTCTTCAAGAACGTTCTCTCTTACTGGAGGAAAA CGAATAGACACTAAAAGTGCAGATTCTTTTGATATTGACATGGTGAATACCTTCTTGTCG ATATTTTTGGCCAAAGGAAAATTGAGCATGGCTTGTAAATTATTTGAAATTTTCACCGAC ATGGGCGCTGACCCTGTTAGTTATACTTACAATTCTATGATGAGTTCATTTGTCAAGAAG GGATATTTCAATGAAGCATGGGGCGTTTTACAGGAAATGGGCGAGAAAGTTTGCCCTTCT GATGTAGCAACATACAATGTCATAATCCAAGGATTGGGAAAGATGGGAAGGGCTGATCTT GCTGATGCCGTACTAGACAAACTAATGAAGCAGGGAGGTTACCTTGACATTGTAATGTAT AACACCTTGATTAATGCCCTCGGGAAGGCTGGCAGAATCGAGGAAGTAAATAAGCTTTTC CAGCAGATGAAAGATAGTGGAATAAATCCAGATGTCGTCACTTACAATACACTAATTGAA GTTCATGCCAAGGCGGGCCAGCTTAAGCAATCTTATAAGTTTTTAAGGATGATGTTGGAA GCAGGTTGTGCGCCGAACCAGGTAACTGATACTACTTTGGACTTTCTGGAGAAGGAGATT GAAAAATTGAGATACCAAAAGGCATCCATGAAACGCCCAAATGAGGCCCGTGAAGAAGTT GAATTCATAGAACTTGGAGTGTCTAGCTTTGATAGCAAAAGTTAGTCCAACGGCTGAATC TTAGTGGATTGCTTTGAAACTAGAAAGTTAGTCCAATCTGATAGAAACTTGATGATGCAC AGATCCGAGCTCTCACAATGACTGTTTCTCATGTTAGTGAATTGCTTTAAAACGTAAGTG TATGTTTGGTGCTCCTGGACAATGAGCTGCTGATGGTCATGGGCTCATGGCCATATTTGA GATTTCACCTCAGGGTAAGAAGGTCAACACA