Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g008700.2.1
CDS Infomation

RNA binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** AT5G16260.1)
Sequence

ATGGCATCATTGAATGCCTCTGAAGATCATCTTCCTCAGCAAGAACAATTACCACAAACG
TCTTATACGGGTGAAGGCAACAGTAGTTTGTATACAACTTCTGGAGTGAGTTCTGAAGTG
GGTTGGTATGTGCTTGCCCAAGATCAACAGCAACTAGGCCCGTATACAATATCTGAATTG
CGTGAGCACTACTCTGCTGGATACCTCCTGGAGAGTACACTAGCATGGTCGGAAGGAAGG
AGTGAATGGCAACCACTTTGCTCGATTCCTGGATTGCTGACTGATGTAGCTGAGCAGAGC
ACTGGTGATACAAATTCAGTTTCTTTGACTTCTAGTGATCCATTTGATGAGTATGAAAAG
TTTCAAAAGGAAGTGAAAGAGGCAGAGGACGAGCAAGCAGTTGATGAGGATCAAAGGCCT
TCAACTCCTCCAGATGGTGAAGATGAGTTCATTGATGATGACGGAACTAGGTACAAATGG
GATAAGGCTCTTAGAGTGTGGGTACCTCAGGAAGATCCAACCGATAAAACGGACTATCGT
CTAGAAGATATGACTTACGCTGAAGAGGAGGAACTTTTCCCTACATTGCCCGCTGACATT
TCTTCTGGAAATGAGAACAAGAACATGGATAATACTGAGGCTAATAAGAATGCTATAAAT
TCAATTGAAACTGCCACAGCAACACATAATGGCAAGAGGAAACTGACTGAAAAAGATGAG
CCTGAAAAAGCTGCTGAAAAGAAGGAAGCTAATAAACCTCCAGATAGCTGGTTCGAATTA
AAAGTCAATACTCATGTCTATATTACAGGCTTGCCAGAAGACGTCACTGTTGACGAGGTG
GTTGAAGTCTTTTCAAAGTGTGGGATCATAAAGGAGGATCCGGAAACACAAAGGCCTCGA
GTGAAGATTTATTTTGACAAAGAAACTGGAAGGAAGAAAGGTGATGCACTTGTAACATAT
CTTAAGGAGCCTTCAGTTGATCTAGCCATTAAAATTTTGGATGGTGCACCTTTACGGCCA
GGTGACAAAATTCCTATGACAGTTACTCCAGCAAAGTTTGAGCAAAAAGGGGAGAGGTTC
ATACCCAAGAAATCAGACAAGCACAGAAAGAAGAAACTCCAAAAAGTTGAGCAGAAGATG
CTTGGCTGGGGTGGTCGGGATGACTCAAAGATATTGGTTCCAGCTACTGTTTTGCTTCGC
TACATGTTCACACCAGCTGAATTGCGGGAGGAAGAGAATTTATGTTCTGAGCTACAGCAA
GACGTCCAAGAGGAATGTTCAAAGTTTGGTCCAGTGGACTTGGTAAAGGTGTGTGAGAAT
CATCCACAAGGGGTTGTTTTGGTCAAATTTAAGGATAGAAAGGATGCACATAGGTGCATT
GAGTCGATGAATGGACGCTGGTTTGCTGGTAGGCAAATTCATGCTAGCGAGGACGATGGA
TCTGTTAACCATGCTTTAGTCCGAGATATAGATGAAGAAACTGATAGGTTGGAGAAGTTT
GGAGCTGAACTTGAAGCTGATTCATAG

Peptide Sequence

PEP ID

Solyc11g008700.2.1
PEP Infomation

RNA binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** AT5G16260.1)
Sequence

MASLNASEDHLPQQEQLPQTSYTGEGNSSLYTTSGVSSEVGWYVLAQDQQQLGPYTISEL
REHYSAGYLLESTLAWSEGRSEWQPLCSIPGLLTDVAEQSTGDTNSVSLTSSDPFDEYEK
FQKEVKEAEDEQAVDEDQRPSTPPDGEDEFIDDDGTRYKWDKALRVWVPQEDPTDKTDYR
LEDMTYAEEEELFPTLPADISSGNENKNMDNTEANKNAINSIETATATHNGKRKLTEKDE
PEKAAEKKEANKPPDSWFELKVNTHVYITGLPEDVTVDEVVEVFSKCGIIKEDPETQRPR
VKIYFDKETGRKKGDALVTYLKEPSVDLAIKILDGAPLRPGDKIPMTVTPAKFEQKGERF
IPKKSDKHRKKKLQKVEQKMLGWGGRDDSKILVPATVLLRYMFTPAELREEENLCSELQQ
DVQEECSKFGPVDLVKVCENHPQGVVLVKFKDRKDAHRCIESMNGRWFAGRQIHASEDDG
SVNHALVRDIDEETDRLEKFGAELEADS*

Transcript Sequence

Transcript ID

Solyc11g008700.2.1
Transcript Infomation

RNA binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** AT5G16260.1)
Sequence

AGACTGGGGAAAAGCAAATTCAATGGCATCATTGAATGCCTCTGAAGATCATCTTCCTCA
GCAAGAACAATTACCACAAACGTCTTATACGGGTGAAGGCAACAGTAGTTTGTATACAAC
TTCTGGAGTGAGTTCTGAAGTGGGTTGGTATGTGCTTGCCCAAGATCAACAGCAACTAGG
CCCGTATACAATATCTGAATTGCGTGAGCACTACTCTGCTGGATACCTCCTGGAGAGTAC
ACTAGCATGGTCGGAAGGAAGGAGTGAATGGCAACCACTTTGCTCGATTCCTGGATTGCT
GACTGATGTAGCTGAGCAGAGCACTGGTGATACAAATTCAGTTTCTTTGACTTCTAGTGA
TCCATTTGATGAGTATGAAAAGTTTCAAAAGGAAGTGAAAGAGGCAGAGGACGAGCAAGC
AGTTGATGAGGATCAAAGGCCTTCAACTCCTCCAGATGGTGAAGATGAGTTCATTGATGA
TGACGGAACTAGGTACAAATGGGATAAGGCTCTTAGAGTGTGGGTACCTCAGGAAGATCC
AACCGATAAAACGGACTATCGTCTAGAAGATATGACTTACGCTGAAGAGGAGGAACTTTT
CCCTACATTGCCCGCTGACATTTCTTCTGGAAATGAGAACAAGAACATGGATAATACTGA
GGCTAATAAGAATGCTATAAATTCAATTGAAACTGCCACAGCAACACATAATGGCAAGAG
GAAACTGACTGAAAAAGATGAGCCTGAAAAAGCTGCTGAAAAGAAGGAAGCTAATAAACC
TCCAGATAGCTGGTTCGAATTAAAAGTCAATACTCATGTCTATATTACAGGCTTGCCAGA
AGACGTCACTGTTGACGAGGTGGTTGAAGTCTTTTCAAAGTGTGGGATCATAAAGGAGGA
TCCGGAAACACAAAGGCCTCGAGTGAAGATTTATTTTGACAAAGAAACTGGAAGGAAGAA
AGGTGATGCACTTGTAACATATCTTAAGGAGCCTTCAGTTGATCTAGCCATTAAAATTTT
GGATGGTGCACCTTTACGGCCAGGTGACAAAATTCCTATGACAGTTACTCCAGCAAAGTT
TGAGCAAAAAGGGGAGAGGTTCATACCCAAGAAATCAGACAAGCACAGAAAGAAGAAACT
CCAAAAAGTTGAGCAGAAGATGCTTGGCTGGGGTGGTCGGGATGACTCAAAGATATTGGT
TCCAGCTACTGTTTTGCTTCGCTACATGTTCACACCAGCTGAATTGCGGGAGGAAGAGAA
TTTATGTTCTGAGCTACAGCAAGACGTCCAAGAGGAATGTTCAAAGTTTGGTCCAGTGGA
CTTGGTAAAGGTGTGTGAGAATCATCCACAAGGGGTTGTTTTGGTCAAATTTAAGGATAG
AAAGGATGCACATAGGTGCATTGAGTCGATGAATGGACGCTGGTTTGCTGGTAGGCAAAT
TCATGCTAGCGAGGACGATGGATCTGTTAACCATGCTTTAGTCCGAGATATAGATGAAGA
AACTGATAGGTTGGAGAAGTTTGGAGCTGAACTTGAAGCTGATTCATAGGGTACTTGACG
TTAGTCCTGGTTTGATTCTCCGATGAAAAGATTTGAAATACCTTCTCCTACTCTATAAAG
TTACGGAGTCTTGGTGTGTTCTCTTAATAGGAATGAATGCACCACTTCACAATGGTACTA
TCTGTCTTTTAAGTTAAAGTTATTTTTTAAGACGTCTTTTATTATTCAAACTACAACGGC
ACCTCATGAACACTAATGATAATTAAAGATAATCTAAACATTAACAAATAGTCCAAAAGT
GTCATTATCATTTTTTTAAATAATTCCCTCTTTTCCCCACACAACGGTCATATTCCAATA
AAACTCACAAAATATGACCGTTGCACCCCACCCCCTACCCCAACTCCTCCACCTATATAA
CCAAAACTCCTACTCTGTTCTTCACTTCACTAACAAAAAACTCAAAAACTTCTCTGAAAA
ATCTCATCAATTCAAAAAAATGGGGTTCACTAGTTACGCTGAAATCTCTGAATCTCTTCA
CCGTACTCGAAAATTCTTCCTTTTATGTAACTACATTCTTCTTGGTGCAGCTTCCAGCTG
CATTTTCTTGACTCTTTCCCTTCGCCTTATCCCTTCGTTAAGCGGTTTCTTCCTCATCTT
CCTCCACATTATCACAATTGGGGGTGCTGTTTTTGGTTGCTCTGCGGTTTCTACTCGTTC
AAGTATGGGAAATTGGTACGGCCCTCATATGGTTTTTACAGTTTTGACAGCGATCTTGCA
GGGCTCTGTTTTCGTGCTGATATTTACGAGAACAGGGGATTTTCTCGGGAAATTGAAATC
GTACGTTAGGGAAGAAGACGGTGAAATGATTTTGCGATTAGCTGGTGGATTGTGTGCATT
GATCTTTTGTCTTGAATGGGTTGTGCTTACATTTGCTTTTTTCTTGAAATATTATGCTTA
TGTTGAAGGTGATGGTAATGTTGTTGGTGGATCTATTGGTATGAAAAGAAGTGCTAAAGT
TCAAGATGAAGAAGATATCAAGAATTGGCCATGGCCTTTTCAAGTCTAAGAATGGGTTGG
GGTGGGGATGGGATTGAGGGGGGTGGGGTAGAAGCTATATATATCATAGCTTCTCAATGA
TTTGTTCATTCATTTGGTTATTTTCTTTTGTTGGGGGTAGGGGGTGGGGGGTGTAATGTA
TGTTGAGTATTTCTTATTGGTTCTATCATATATATATACAAATATATGTTCTTACTAATT
CATTAGAAATGAATTTTGTGTTACCTTATGGGGAATTTAATGTGTTCATTGAGATCAAAG
TGCATATTGGACTTCACTCAATTTAATTCATTCTATTAAAATGAAAATTCCGATAATAAT
ATCTTCATATTAGGACATATTCAACAT