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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g008620.2.1
CDS Infomation

Phosphoglycolate phosphatase (AHRD V3.3 *** A0A0V0I1W8_SOLCH)
Sequence

ATGCTAAGCATCAGAGTAACAGCAACCATTTCTTCTTCTTCAACTCTTTTCTTTACAAAT
TCCAAAAAAATTTCGAATAAATTCTCTTACATTTCAAATCCATTGAAAAATTCTTCAAAA
CCCATTAAATGGAACTGTAAAAATTCAAGAATGGAGTCATCAAAATCAAGTTTTGTTACC
AAAGCTTCAGCACAGCCACTTACAAATCCTGCAGAACTCATTGATTCTGTTGAAACTTTC
ATCTTCGATTGTGATGGAGTTATATGGAAAGGAGATAAACTGATAGACGGAGTCCCTGAA
ACTTTGGATTTGCTCAGGGAAAAGGGAAAAAGATTAGTTTTTGTTACCAACAACTCAACA
AAGTCTAGAAAGCAGTATGGGAAAAAATTTGAAACACTTGGTCTTAGTGTCAACGAGGAG
GAAATTTTTGCTTCATCCTTTGCTGCAGCTGCATATTTGAAGTCTATTGACTTCCCAAAA
GATAAAAAGGTGTACGTTGTTGGTGAGGATGGCATCTTGAAGGAGCTTGAGTTAGCTGGT
ATTCAATATCTTGGAGGACCGGAAGATGGTGACAAGAAAATAGAGCTAAAGCCTGGATAT
ATGATGGAGCAGGATAAAGATGTTGGAGCTGTTGTTGTTGGATTTGACCGCTATTTCAAC
TACCACAAGATTCAGTATGCTACCCTGTGCATACGTGAAAATCCAGGATGTCTCTTCATT
GCTACAAATCGTGATGCTGTTACCCATCTTACAGATGCTCAGGAATGGGCAGGTGGTGGT
TCAATGGTTGGTGCGATCCTAGGCTCTACAAAGCGTGAACCACTTGTTGTAGGAAAGCCC
TCAACCTTCATGATGGACTACTTGGCTGATAAGTTTAAGATACAGAAGTCGCAGATATGC
ATGGTCGGTGACAGATTGGATACAGATATAGTGTTTGGACAAAATGGTGGCTGCAAAACT
CTTCTGGTTCTCTCAGGCGTGACATCTCTATCGATGCTTCAAGATCCCAGCAACTCTACA
CAACCGGATTTCTACGCCAACAAGATTTCTGATTTCCTCTCCATTAAAGCGGCTGCAGTT
TGA

Peptide Sequence

PEP ID

Solyc11g008620.2.1
PEP Infomation

Phosphoglycolate phosphatase (AHRD V3.3 *** A0A0V0I1W8_SOLCH)
Sequence

MLSIRVTATISSSSTLFFTNSKKISNKFSYISNPLKNSSKPIKWNCKNSRMESSKSSFVT
KASAQPLTNPAELIDSVETFIFDCDGVIWKGDKLIDGVPETLDLLREKGKRLVFVTNNST
KSRKQYGKKFETLGLSVNEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAG
IQYLGGPEDGDKKIELKPGYMMEQDKDVGAVVVGFDRYFNYHKIQYATLCIRENPGCLFI
ATNRDAVTHLTDAQEWAGGGSMVGAILGSTKREPLVVGKPSTFMMDYLADKFKIQKSQIC
MVGDRLDTDIVFGQNGGCKTLLVLSGVTSLSMLQDPSNSTQPDFYANKISDFLSIKAAAV
*

Transcript Sequence

Transcript ID

Solyc11g008620.2.1
Transcript Infomation

Phosphoglycolate phosphatase (AHRD V3.3 *** A0A0V0I1W8_SOLCH)
Sequence

ATATAATATTATTATTTACTAATAATATACCAAATTTTTTATTATTTTTTATATTCATTT
TAGTAACAAACTCAAATCAGTTATTGGAACAGAAAAAATAAAAATAAAAAAAATATGCTA
AGCATCAGAGTAACAGCAACCATTTCTTCTTCTTCAACTCTTTTCTTTACAAATTCCAAA
AAAATTTCGAATAAATTCTCTTACATTTCAAATCCATTGAAAAATTCTTCAAAACCCATT
AAATGGAACTGTAAAAATTCAAGAATGGAGTCATCAAAATCAAGTTTTGTTACCAAAGCT
TCAGCACAGCCACTTACAAATCCTGCAGAACTCATTGATTCTGTTGAAACTTTCATCTTC
GATTGTGATGGAGTTATATGGAAAGGAGATAAACTGATAGACGGAGTCCCTGAAACTTTG
GATTTGCTCAGGGAAAAGGGAAAAAGATTAGTTTTTGTTACCAACAACTCAACAAAGTCT
AGAAAGCAGTATGGGAAAAAATTTGAAACACTTGGTCTTAGTGTCAACGAGGAGGAAATT
TTTGCTTCATCCTTTGCTGCAGCTGCATATTTGAAGTCTATTGACTTCCCAAAAGATAAA
AAGGTGTACGTTGTTGGTGAGGATGGCATCTTGAAGGAGCTTGAGTTAGCTGGTATTCAA
TATCTTGGAGGACCGGAAGATGGTGACAAGAAAATAGAGCTAAAGCCTGGATATATGATG
GAGCAGGATAAAGATGTTGGAGCTGTTGTTGTTGGATTTGACCGCTATTTCAACTACCAC
AAGATTCAGTATGCTACCCTGTGCATACGTGAAAATCCAGGATGTCTCTTCATTGCTACA
AATCGTGATGCTGTTACCCATCTTACAGATGCTCAGGAATGGGCAGGTGGTGGTTCAATG
GTTGGTGCGATCCTAGGCTCTACAAAGCGTGAACCACTTGTTGTAGGAAAGCCCTCAACC
TTCATGATGGACTACTTGGCTGATAAGTTTAAGATACAGAAGTCGCAGATATGCATGGTC
GGTGACAGATTGGATACAGATATAGTGTTTGGACAAAATGGTGGCTGCAAAACTCTTCTG
GTTCTCTCAGGCGTGACATCTCTATCGATGCTTCAAGATCCCAGCAACTCTACACAACCG
GATTTCTACGCCAACAAGATTTCTGATTTCCTCTCCATTAAAGCGGCTGCAGTTTGAGCA
AATCCACTGATTACGCGTGGCGATCCCATTCTTTGTGTTTGATGTGTTTACAAATGCACT
TCATTTATGCATCCCAGTTTTCTCTTGTAGCTAAAAGAAGATGGGAGTTGAAATTAGGCA
TATGAGAAATTGCATAATGCAATGTAAAGTGTACCATTTTAACTTTCTAGATATAATAAT
GGAAAAAAAATGGAGTCTAAGCTTTAAAATCATGATGTAGTGAGGCATCTTTTGATTATT
TTTTCTTGTTTGGTGCATAATGATGCAAAAATTGGAATGTCATGATTCATATGCTTCAAT
TTAGTGAAGATGGAATGTCAATGCTATTGTAAAAATATTAATTTTTTTT