Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g008580.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G05890.1)
Sequence

ATGGCATCGGAGGATGAATTGATGATGCAGGATGCTACCGACGACGGCGAGTCCTTCGAT
GATGATTTCTACAGCGGCGGCGATGTTCATGATGATTCCGATGATGATGACGTCATGGAT
TACGATTTCATCGATAACGACTCCGATGATTCTGATACGGTCATCGCACATCATCGCTCT
CAGTCAAACTATAGCATCTTGAATGAAGCTGATATTCACAAATGCCAAGAGGAAAGTATT
ACAAAGATATCTACAGTGCTCTCTATTCCAAGGGTAGCTGCTGGCATCCTGCTTCGCCAT
TATAACTGGAGTGTCAGCAAAGTGAATGATGAATGGTTTGCAGATGAAGGAAAGGTCCGC
AGGATTGTTGGTTTGTTAGAGAATCATGTGCCACTCCCTGATGGGGAAGAGCTTACTTGT
GGGATCTGCTTTGACGTTTATCCTCGTAAGGAAATCAGTGCGGCTGCTTGTGGTCATCCT
TTTTGTTTCACATGCTGGCAAGGGTATATTAGCACGTCCATCACTGATGGTCCTGGATGC
TTGATGTTGCGCTGTCCTGATCCATCTTGTAGTGCTGCTATCGGTCTAGATATGATAAAC
AAATTGGCCTCTGATGATGACAAAAAGAAGTATAATAGGTACTTTATCAGGTCGTTCGTG
GAGGACAACAGAAAGACAAAATGGTGTCCTGCTCCAGGGTGTGATTATGCAGTTGACTAT
ATTGTTGGTAGTGGAAGCTATGATGTTACTTGTGGGTGCTCATATAGTTTCTGCTGGAAT
TGTACCGAGGAAACTCATCGCCCAGTTGATTGTGGAACTGTGTCTAAGTGGATTTTGAAG
AACAGTGCAGAGTCTGAGAACATGAACTGGATATTAGCTAATTCTAAGCCTTGTCCGAAA
TGCAAGCGGCCAATTGAGAAAAATCAGGGGTGCATGCATATCACATGCACACCACCCTGT
AAATTTGAGTTTTGCTGGCTCTGCCTTGGCCCTTGGACGGATCACGGTGAGAGAACTGGT
GGCTTTTATGCGTGCAACCGTTACGAGTCCGCAAAGCAAGATGGAGTGTTTGATGAATCT
GAAAAGAGGAGAGAGATGGCCAAAAATTCTTTAGAAAGATATACACATTACTATGAGCGA
TGGGCCACCAACCAGTCGTCACGGCAAAAGGCACTTTCAGATCTTCAGCAAATGCAAACA
GTACATCTTGAGAAACTGAGTGACAAACAGTGTCAACCCGAATCACAGCTCAAATTTATT
ATAGAGGCCTGGTTGCAGATAGTTGAGTGTAGGCGTGTGCTAAAATGGACTTATGCATAT
GGTTATTACTTACCCGAGCATGAACATGCCAAAAGGCAGTTCTTTGAGTATTTACAAGGT
TTTGCCTTTGCTTCCTTTTCGAGAATCACATTTATATGGTTTCCTTCATTTATTGAGGCT
CTTATCCTTAACGACGTAGGTGAGGCTGAGTCTGGACTTGAACGGCTTCATCAGTGCGCG
GAGAAAGAACTCCAGGGGTATCTTGATGCAGAAGGTCCATCAAGAGAATTTAATGAGTTC
CGAACAAAGCTTGCAGGGCTTACAAGTGTAACTCGAAACTACTTTGAGAACCTGGTTCGA
GCTTTAGAGAATGGTCTCTCGGATGTGGATGGTCATGGTGCTTACAGCAGGGCAGCTAGC
TCGAAAAGCTTGGGAGGTGGGAGCATCAAAGGGAAGGGCGGTAGAGGAAAGGGAGCCACA
TCAAGATCAAGCAGTTCCAGAAACATAGATGATTCAGGACACTGGTCTTGTGAGTATTGT
ACATATGCCAATGTTAGGTCTGCTACCGCGTGCCAGATGTGCCAGCAGCGTCGTTGA

Peptide Sequence

PEP ID

Solyc11g008580.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G05890.1)
Sequence

MASEDELMMQDATDDGESFDDDFYSGGDVHDDSDDDDVMDYDFIDNDSDDSDTVIAHHRS
QSNYSILNEADIHKCQEESITKISTVLSIPRVAAGILLRHYNWSVSKVNDEWFADEGKVR
RIVGLLENHVPLPDGEELTCGICFDVYPRKEISAAACGHPFCFTCWQGYISTSITDGPGC
LMLRCPDPSCSAAIGLDMINKLASDDDKKKYNRYFIRSFVEDNRKTKWCPAPGCDYAVDY
IVGSGSYDVTCGCSYSFCWNCTEETHRPVDCGTVSKWILKNSAESENMNWILANSKPCPK
CKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWTDHGERTGGFYACNRYESAKQDGVFDES
EKRREMAKNSLERYTHYYERWATNQSSRQKALSDLQQMQTVHLEKLSDKQCQPESQLKFI
IEAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGFAFASFSRITFIWFPSFIEA
LILNDVGEAESGLERLHQCAEKELQGYLDAEGPSREFNEFRTKLAGLTSVTRNYFENLVR
ALENGLSDVDGHGAYSRAASSKSLGGGSIKGKGGRGKGATSRSSSSRNIDDSGHWSCEYC
TYANVRSATACQMCQQRR*

Transcript Sequence

Transcript ID

Solyc11g008580.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G05890.1)
Sequence

AGGGCTATTATAGAAACTACACCATTTTCCACTTTCCCTTTTTTTTTTTCCATTTCCTCT
CAACAAAAAAAAATTCTCTTTCATTTCCTCAACCTATACATACACAATATATATATATAG
ATAGAGAGAAGAAGGGGGGTGGGGGGTGAAAAAGGGAGAAATGGCATCGGAGGATGAATT
GATGATGCAGGATGCTACCGACGACGGCGAGTCCTTCGATGATGATTTCTACAGCGGCGG
CGATGTTCATGATGATTCCGATGATGATGACGTCATGGATTACGATTTCATCGATAACGA
CTCCGATGATTCTGATACGGTCATCGCACATCATCGCTCTCAGTCAAACTATAGCATCTT
GAATGAAGCTGATATTCACAAATGCCAAGAGGAAAGTATTACAAAGATATCTACAGTGCT
CTCTATTCCAAGGGTAGCTGCTGGCATCCTGCTTCGCCATTATAACTGGAGTGTCAGCAA
AGTGAATGATGAATGGTTTGCAGATGAAGGAAAGGTCCGCAGGATTGTTGGTTTGTTAGA
GAATCATGTGCCACTCCCTGATGGGGAAGAGCTTACTTGTGGGATCTGCTTTGACGTTTA
TCCTCGTAAGGAAATCAGTGCGGCTGCTTGTGGTCATCCTTTTTGTTTCACATGCTGGCA
AGGGTATATTAGCACGTCCATCACTGATGGTCCTGGATGCTTGATGTTGCGCTGTCCTGA
TCCATCTTGTAGTGCTGCTATCGGTCTAGATATGATAAACAAATTGGCCTCTGATGATGA
CAAAAAGAAGTATAATAGGTACTTTATCAGGTCGTTCGTGGAGGACAACAGAAAGACAAA
ATGGTGTCCTGCTCCAGGGTGTGATTATGCAGTTGACTATATTGTTGGTAGTGGAAGCTA
TGATGTTACTTGTGGGTGCTCATATAGTTTCTGCTGGAATTGTACCGAGGAAACTCATCG
CCCAGTTGATTGTGGAACTGTGTCTAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAGAA
CATGAACTGGATATTAGCTAATTCTAAGCCTTGTCCGAAATGCAAGCGGCCAATTGAGAA
AAATCAGGGGTGCATGCATATCACATGCACACCACCCTGTAAATTTGAGTTTTGCTGGCT
CTGCCTTGGCCCTTGGACGGATCACGGTGAGAGAACTGGTGGCTTTTATGCGTGCAACCG
TTACGAGTCCGCAAAGCAAGATGGAGTGTTTGATGAATCTGAAAAGAGGAGAGAGATGGC
CAAAAATTCTTTAGAAAGATATACACATTACTATGAGCGATGGGCCACCAACCAGTCGTC
ACGGCAAAAGGCACTTTCAGATCTTCAGCAAATGCAAACAGTACATCTTGAGAAACTGAG
TGACAAACAGTGTCAACCCGAATCACAGCTCAAATTTATTATAGAGGCCTGGTTGCAGAT
AGTTGAGTGTAGGCGTGTGCTAAAATGGACTTATGCATATGGTTATTACTTACCCGAGCA
TGAACATGCCAAAAGGCAGTTCTTTGAGTATTTACAAGGTTTTGCCTTTGCTTCCTTTTC
GAGAATCACATTTATATGGTTTCCTTCATTTATTGAGGCTCTTATCCTTAACGACGTAGG
TGAGGCTGAGTCTGGACTTGAACGGCTTCATCAGTGCGCGGAGAAAGAACTCCAGGGGTA
TCTTGATGCAGAAGGTCCATCAAGAGAATTTAATGAGTTCCGAACAAAGCTTGCAGGGCT
TACAAGTGTAACTCGAAACTACTTTGAGAACCTGGTTCGAGCTTTAGAGAATGGTCTCTC
GGATGTGGATGGTCATGGTGCTTACAGCAGGGCAGCTAGCTCGAAAAGCTTGGGAGGTGG
GAGCATCAAAGGGAAGGGCGGTAGAGGAAAGGGAGCCACATCAAGATCAAGCAGTTCCAG
AAACATAGATGATTCAGGACACTGGTCTTGTGAGTATTGTACATATGCCAATGTTAGGTC
TGCTACCGCGTGCCAGATGTGCCAGCAGCGTCGTTGAAGCCGTTCTTGAAGTTACTACTT
CAGATTGGGAAAATCCTCACTATCTGCTGATTGTTATGACTGTGGTCCAGCTCCAGACGT
GTCTTCTAAGTCACGTACATACAGGAACAAATCGAAACCTAACAGTCGTAATGTCTGATG
GAGACGATAAGTTAATGGCCATGAGTTGGAAAGTCAATCATACATCTGGAGATGAATATG
TACATACTGCTTGTTGTCTGTCATCTTTGTAACCTTATCTGACTTGTTGCCAGAAAAATG
TTCTTTTGAAATATTCAACTCCCTGATTATACAAAGCTGTTGTGTTGGTAAAGTTTTAAG
GGCATATCATAGCATATAAAATAGAAGGTACCAACTAAAAGAAATAAACACAAAATGATG
GAAAGGATTGAGTAGATGGTTCGCTAGAT