Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g008390.2.1
CDS Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9PZF9_ZOSMR)
Sequence

ATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCT
GGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTG
AAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGAT
GATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTC
AAATCTGTAAATGAAGGCAGTAAGATTCTTCAGGCTTTACAGATCGAGAACATATCATCA
AGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAG
CTTGATTTATCTGAGGAAGTTCGAGAACAAATTGAACTTGTGCATGCTCAATTTAAAAGA
GCCAAAGGAAAGATGGAGTCACCTGATGAGCAACTTGAAAAGGATTTAGCTATGGCACAA
AGGGAACAATATCCTGACCCCCTGATTTTCAAACGGCTGTCTGAGAAACTGCATCTCAGG
ACCATAAATGATCTAAAGAAGGAGTCGCTTGCCATCCATGACATGGTCATTTCTAGTGGT
GGAGATCCCGAAGAGTGTTTTGAAACAATAGCATACCTCCTAAGAAAGCTGAAGGACTGT
GCAATGACAGAGAATCCTGAACTGGATGCTCTTGAGGGTGACAAGAGTTTGATTAAGCAC
AGATCTCCCGTTATTCCAGATGACTTCCGCTGTCCAATATCACTTGAGTTGATGAAAGAT
CCTGTTATTGTATCTACCGGACAGACCTATGAAAGGTCATGCATCCAAAAATGGCTGGAT
GCAGGACACAAGACCTGCCCTAAGACTCAGCAGACACTGTTGCACACTGCGCTGACTCCA
AACTACGTTCTGAAGAGCCTGATTGCGTTGTGGTGTGAGAGTAATGGTGTTGAGCTGCCT
AAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGT
GTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCA
GCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCT
GGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAG
GAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATC
GTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCA
AGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCA
ATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGG
GGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTC
AGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGT
GGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCAGGAGGGTAAG
GCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCAGGTAATTAGGACAGGTTCT
CCTCGTAACCGAGAGAATGCTGCAGCTATTTTGTGGTCTCTATGTACAGGTGATGTTCAG
AGCTTAAAGATCGTTAGGGAGCTTGGAGCAGAAGAGGTACTGAAGGAACTATCGGAGAAT
GGTACAGATAGAGCTAAAAGAAAAGCCGGAAGTGTTTTGGAACTTCTTCAACGAGTCGAT
CCAGTTGAATCATAA

Peptide Sequence

PEP ID

Solyc11g008390.2.1
PEP Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9PZF9_ZOSMR)
Sequence

MGHQKEELINELTELIDGVSGLPECRSVSKRMYSNLVRRVKLLSPLVEDLKDSDGVEVGD
DVVHGLELLKIALISGLELLKSVNEGSKILQALQIENISSRFLDVTEQIEDALSHIPYNK
LDLSEEVREQIELVHAQFKRAKGKMESPDEQLEKDLAMAQREQYPDPLIFKRLSEKLHLR
TINDLKKESLAIHDMVISSGGDPEECFETIAYLLRKLKDCAMTENPELDALEGDKSLIKH
RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP
NYVLKSLIALWCESNGVELPKNQGTCRNKRTGAGGSDCDRVAIDALLQKLANGNSEQQRA
AAGELRLLAKRNADNRVCIAGAGAIPLLVELLSSSDSRTQEHAVTALLNLSINESNKGTI
VNAGAIPDIVDVLRNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIDLLCHGTPR
GKKDAATAIFNLSIYQGNKVRAVRAGIVPPLVRLLKDPGGGMMDEALAILAILASHQEGK
AAIAQSEPLPVLVQVIRTGSPRNRENAAAILWSLCTGDVQSLKIVRELGAEEVLKELSEN
GTDRAKRKAGSVLELLQRVDPVES*

Transcript Sequence

Transcript ID

Solyc11g008390.2.1
Transcript Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9PZF9_ZOSMR)
Sequence

AACAAATCAATGTTTTCCATTTCATCTATGCTTCACCTGCTTTGTTTTTTCCTTGTGTGA
ACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAA
TCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCA
ACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTG
ATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTC
CATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAAT
TTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATT
TTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGAT
GGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTG
AGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAG
GTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTG
GAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAGGCTTTACAGATCGAGAAC
ATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCT
TACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAAATTGAACTTGTGCATGCTCAA
TTTAAAAGAGCCAAAGGAAAGATGGAGTCACCTGATGAGCAACTTGAAAAGGATTTAGCT
ATGGCACAAAGGGAACAATATCCTGACCCCCTGATTTTCAAACGGCTGTCTGAGAAACTG
CATCTCAGGACCATAAATGATCTAAAGAAGGAGTCGCTTGCCATCCATGACATGGTCATT
TCTAGTGGTGGAGATCCCGAAGAGTGTTTTGAAACAATAGCATACCTCCTAAGAAAGCTG
AAGGACTGTGCAATGACAGAGAATCCTGAACTGGATGCTCTTGAGGGTGACAAGAGTTTG
ATTAAGCACAGATCTCCCGTTATTCCAGATGACTTCCGCTGTCCAATATCACTTGAGTTG
ATGAAAGATCCTGTTATTGTATCTACCGGACAGACCTATGAAAGGTCATGCATCCAAAAA
TGGCTGGATGCAGGACACAAGACCTGCCCTAAGACTCAGCAGACACTGTTGCACACTGCG
CTGACTCCAAACTACGTTCTGAAGAGCCTGATTGCGTTGTGGTGTGAGAGTAATGGTGTT
GAGCTGCCTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGAC
TGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAG
CAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTC
TGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCT
CGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAG
GGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGC
ATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAAC
AAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGA
ACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGA
AACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGAT
CCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCAG
GAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCAGGTAATTAGG
ACAGGTTCTCCTCGTAACCGAGAGAATGCTGCAGCTATTTTGTGGTCTCTATGTACAGGT
GATGTTCAGAGCTTAAAGATCGTTAGGGAGCTTGGAGCAGAAGAGGTACTGAAGGAACTA
TCGGAGAATGGTACAGATAGAGCTAAAAGAAAAGCCGGAAGTGTTTTGGAACTTCTTCAA
CGAGTCGATCCAGTTGAATCATAACACTAGATTAATCTGTGCGAAGACTCTCTTTTGCAG
CTATCAACAGGAATGTATGAATCTTGAAGGATTAATTCTACCTGAGAACTTCATGGAGGT
CAGACAATCCAGTAACTTAACTGTAAACGCGATTCTGACACGCCAACGGAGAAAGATCCC
TTATAAAGTCAGCAATGTTTTTCTCTATATGTATATTTTTCACTTCTTTTTGAAACCTTG
GTCCAGGAGCAAAGGCTTGTTTTTTCATGTTAGTGTTTATAGCTGTAATCTATATAATGT
TTGTTGTTTATACTTTTCATCTTAGTGTCTGATTATGGAAGTAATGTCACTTCCACTTTT
GATGATGAAATGAAGAAAAAAATTTGTCAC