Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g008260.2.1
CDS Infomation

Papain family cysteine protease (AHRD V3.3 *** AT3G54940.2)
Sequence

ATGGCAAAAGGAGGTGGTCTAACCTACGCGTTAAGCGTTACAATTCTAACATGCGCATTT
TCTCTACTTCCCTTTCACCATACATCAGCAGCAGCAGCAGTTCCAGAAGAATTCAAAATC
CGGCAAGTCACCGACGGTCGAAATCCTACAACCACCGCGCACGGCGGAAGCAACCACCAC
CTCCTCGGTACTCCCGCCGAGCACCGATTCAAGTCATTCATACAGGAATACAACAAAGAG
TACAGTACACGTGAGGAGTACGTACACCGCCTCGGAGTCTTCGTTAAAAATCTCCTCAGG
GCGGCGGAGCACCAGGCTTTGGATCCTACGGCGGTTCACGGCGTTACGCAGTTTTCCGAT
CTGACGTCGGAGGAATTCGAGAGGATGTATATGGGTGTTAAAGGTGGTGATCGGACTTCC
TTGTTGAGAGAGTTTGGGTCTCACGCGCCGCCGATGGAAGTGAAGGATTTGCCGAATAGT
TTTGATTGGAGAGAGAAAGGTGCTGTTACTGACGTGAAGATGCAGGGGTCTTGCGGCTCA
TGCTGGGCGTTTAGTACTACTGGATCTATTGAAGGAGCCAACTTCATTGCCACGGGCAAG
CTTCTAAATCTTAGCGAACAACAGCTTGTAGATTGTGATAACACGTGTGATAAAAAGGAC
AGAAAGGCTTGTGATTCCGGATGCAGAGGAGGCCTAATGACGAATGCATACAAGTACTTA
ATCGAAGCAGGAGGTATAGAAGAGGAAGATTCATATCCATATACGGGTAAACGTGGCGAA
TGCAAGTTTAGCCCAGACAAAGTCGCGGTAAAAGTCTCCAATTTCACCAATATTCCCATT
GACGAACAACAAATCGCTGCTTATTTAGTCAATCACGGACCTCTCGCAGTCGGTTTGAAT
GCTGTGTTTATGCAAACGTACATCGGAGGTGTGTCATGCCCGTTAATATGTGGAAAGAGA
TGGGTTAACCATGGCGTATTGCTAGTTGGTTATGGTTCAAAGGGGTTCTCGATTCTGCGT
TTGAGCAATCAGCCATATTGGATCATAAAGAACTCGTGGGGGAAGCGATGGGGCGAAAAC
GGATACTATAAGCTTTGTAGAGGACATGGGATGTGTGGAATGAACACAATGGTTTCTGCT
GTTATGACCCAAACCTCCTAA

Peptide Sequence

PEP ID

Solyc11g008260.2.1
PEP Infomation

Papain family cysteine protease (AHRD V3.3 *** AT3G54940.2)
Sequence

MAKGGGLTYALSVTILTCAFSLLPFHHTSAAAAVPEEFKIRQVTDGRNPTTTAHGGSNHH
LLGTPAEHRFKSFIQEYNKEYSTREEYVHRLGVFVKNLLRAAEHQALDPTAVHGVTQFSD
LTSEEFERMYMGVKGGDRTSLLREFGSHAPPMEVKDLPNSFDWREKGAVTDVKMQGSCGS
CWAFSTTGSIEGANFIATGKLLNLSEQQLVDCDNTCDKKDRKACDSGCRGGLMTNAYKYL
IEAGGIEEEDSYPYTGKRGECKFSPDKVAVKVSNFTNIPIDEQQIAAYLVNHGPLAVGLN
AVFMQTYIGGVSCPLICGKRWVNHGVLLVGYGSKGFSILRLSNQPYWIIKNSWGKRWGEN
GYYKLCRGHGMCGMNTMVSAVMTQTS*

Transcript Sequence

Transcript ID

Solyc11g008260.2.1
Transcript Infomation

Papain family cysteine protease (AHRD V3.3 *** AT3G54940.2)
Sequence

ATGAAACCCATTTGCCTATATCTTCTTCATTGAAGCTCCAAAACTAAAGCACAGAAAAAA
TGGCAAAAGGAGGTGGTCTAACCTACGCGTTAAGCGTTACAATTCTAACATGCGCATTTT
CTCTACTTCCCTTTCACCATACATCAGCAGCAGCAGCAGTTCCAGAAGAATTCAAAATCC
GGCAAGTCACCGACGGTCGAAATCCTACAACCACCGCGCACGGCGGAAGCAACCACCACC
TCCTCGGTACTCCCGCCGAGCACCGATTCAAGTCATTCATACAGGAATACAACAAAGAGT
ACAGTACACGTGAGGAGTACGTACACCGCCTCGGAGTCTTCGTTAAAAATCTCCTCAGGG
CGGCGGAGCACCAGGCTTTGGATCCTACGGCGGTTCACGGCGTTACGCAGTTTTCCGATC
TGACGTCGGAGGAATTCGAGAGGATGTATATGGGTGTTAAAGGTGGTGATCGGACTTCCT
TGTTGAGAGAGTTTGGGTCTCACGCGCCGCCGATGGAAGTGAAGGATTTGCCGAATAGTT
TTGATTGGAGAGAGAAAGGTGCTGTTACTGACGTGAAGATGCAGGGGTCTTGCGGCTCAT
GCTGGGCGTTTAGTACTACTGGATCTATTGAAGGAGCCAACTTCATTGCCACGGGCAAGC
TTCTAAATCTTAGCGAACAACAGCTTGTAGATTGTGATAACACGTGTGATAAAAAGGACA
GAAAGGCTTGTGATTCCGGATGCAGAGGAGGCCTAATGACGAATGCATACAAGTACTTAA
TCGAAGCAGGAGGTATAGAAGAGGAAGATTCATATCCATATACGGGTAAACGTGGCGAAT
GCAAGTTTAGCCCAGACAAAGTCGCGGTAAAAGTCTCCAATTTCACCAATATTCCCATTG
ACGAACAACAAATCGCTGCTTATTTAGTCAATCACGGACCTCTCGCAGTCGGTTTGAATG
CTGTGTTTATGCAAACGTACATCGGAGGTGTGTCATGCCCGTTAATATGTGGAAAGAGAT
GGGTTAACCATGGCGTATTGCTAGTTGGTTATGGTTCAAAGGGGTTCTCGATTCTGCGTT
TGAGCAATCAGCCATATTGGATCATAAAGAACTCGTGGGGGAAGCGATGGGGCGAAAACG
GATACTATAAGCTTTGTAGAGGACATGGGATGTGTGGAATGAACACAATGGTTTCTGCTG
TTATGACCCAAACCTCCTAAGAAGATAAATTAAGTAGCGTAGGGCACGGAATATTAGTGA
GGCTCTAAGTCCGTGACATTATATCTTACTCTTAAACTTAAAACTCGTTCAAGTTAAAAT
AAATTTGTATTGAAGTTCTTGAAACTTTTAGGTATATGTATTATAAACCTCTTTTTTTTT
CTTTTAGACTCGAAAGTTAGCTTGGCCCAATACAACTGTGGATGCTGCTATTTTGTGTTT
TTTTTTATTGTTTAATGTTGTGGGAATGTGCTTATAA