Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g006380.2.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** A9PHB6_POPTR)
Sequence

ATGGCGTCGTTTATGCAGAAACTCGCGAGAACGAAGAACATTGGGAAAAGGTCTAAAAAA
AAGTATTTGGAAGAAGCACTTTACAAAAATCTGTTCAAAGAAGGAAGCGAAGAGAATCAT
GTTAGGAAAAATCTGAATCAATTTTTGAAATCACACAAAAGTGCTTTCAAATGGGAAGTT
GGAAAATCCATCAAAGTGTTGCGCCAACGCAAGCTTTACGCTCCAGCACTCAAGTTATCA
GAAACAATGGAAAAAAGGGGCATGAACAGGACCATAAGTGATCAAGCTATACATATAGAT
ATTGTTGCCAAGAGTAAAGGGATTGAAGCAGCAGAGAGCTATTTTTTGAATCTTCCAGAG
ACATCGAAAGATCTTCTTACTTATTGTGCCCTTTTGAACTGCTACTGCAAAGAATTAATG
ACTGAAAAAGCTGAGGCTTTGATGGAGAAAGTGAAAGAACTTAACTTAAGTTTAAGCTCC
ATGCCTTACAACAGCTTGATGACTCTTTACACAAAAACTGGGCACCCAGAAAAAATCCCA
GCCATTATTCAAGAAATGAAGGCCAATGATGTTATGCCAGATTCTTATACCTACAACGTC
TGGATGAGGGCTCTTTCTTCTATGAATGATATTTCTGGGGTTGAGAGGGTTGTTGATGAA
ATGAAGAGGGATGGCCGTGTTGCTGAAGATTGGACTACATATAGTAATTTGGCATCGATC
TATGCAGATGCTGGCTTAACTGATAAAGCAGTGAAGGCACTCAAGGAATTGGAGAAGAAA
AATGCATGCCGCAATATTACTGCATACCAGTTTCTGATCACACTGTATGGTCGTGTTGGA
ACTTTGCTTGAAGTATATCGTGTATGGCGTTCTTTGAGGCTTGCTTTTCCCAGAACAGCA
AACATAAGCTATCTTAACATGATCCAAGTTTTAGTAAATTTGAATGACTTACCAGGTGCT
GAGAAATGTTTCAAGGAATGGGAGTCTGGATGCCCAACTTATGACATACGTATAGCAAAT
GTTCTTATAGGAGCTTACACTAAACAAAGTTCCCTGGAGAAAGCTGAACAGCTCAAGGAA
CGGGCACGAAGGAGTGGAGCTAAGCCCAATGCTAAGACATGGGAGATCTTCATGGACTAT
TATCTGCAAAGCGGGGATATCAAATCAGCAATTGATTGTGTGGACAAAGCAGTTTCAATT
GGAAGGGGTGATGGCAGCAAGTGGTTTCCATCATCTGCCATTGTAACAAAATTCATGAGT
CATTTTAAACAACATAAAGATGTCGCTGGTGCAGAACACTTTGTGGAAATGTTGAAGAAG
GCTAAGGATGAGTTGGGGGTTGACATATTTGAATCTTTATTACGAACTTATATAGCTTCT
GAAAAAACAAGTCCTATCATGCGTCGGCGTATAAAAATGGAAAACATAGAGCTGACTGAT
GAAGGTAAAAGATTGCTGGATGCTGTTTCTGTGGAGTGA

Peptide Sequence

PEP ID

Solyc11g006380.2.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** A9PHB6_POPTR)
Sequence

MASFMQKLARTKNIGKRSKKKYLEEALYKNLFKEGSEENHVRKNLNQFLKSHKSAFKWEV
GKSIKVLRQRKLYAPALKLSETMEKRGMNRTISDQAIHIDIVAKSKGIEAAESYFLNLPE
TSKDLLTYCALLNCYCKELMTEKAEALMEKVKELNLSLSSMPYNSLMTLYTKTGHPEKIP
AIIQEMKANDVMPDSYTYNVWMRALSSMNDISGVERVVDEMKRDGRVAEDWTTYSNLASI
YADAGLTDKAVKALKELEKKNACRNITAYQFLITLYGRVGTLLEVYRVWRSLRLAFPRTA
NISYLNMIQVLVNLNDLPGAEKCFKEWESGCPTYDIRIANVLIGAYTKQSSLEKAEQLKE
RARRSGAKPNAKTWEIFMDYYLQSGDIKSAIDCVDKAVSIGRGDGSKWFPSSAIVTKFMS
HFKQHKDVAGAEHFVEMLKKAKDELGVDIFESLLRTYIASEKTSPIMRRRIKMENIELTD
EGKRLLDAVSVE*

Transcript Sequence

Transcript ID

Solyc11g006380.2.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** A9PHB6_POPTR)
Sequence

CTTCTTCCTCAGCTTGGCTAGGGTTTTTTTAACCTGAAACTAAAACCCCCAAATCTCAGT
GTAAGAAGGAAACCATTACAATGGCGTCGTTTATGCAGAAACTCGCGAGAACGAAGAACA
TTGGGAAAAGGTCTAAAAAAAAGTATTTGGAAGAAGCACTTTACAAAAATCTGTTCAAAG
AAGGAAGCGAAGAGAATCATGTTAGGAAAAATCTGAATCAATTTTTGAAATCACACAAAA
GTGCTTTCAAATGGGAAGTTGGAAAATCCATCAAAGTGTTGCGCCAACGCAAGCTTTACG
CTCCAGCACTCAAGTTATCAGAAACAATGGAAAAAAGGGGCATGAACAGGACCATAAGTG
ATCAAGCTATACATATAGATATTGTTGCCAAGAGTAAAGGGATTGAAGCAGCAGAGAGCT
ATTTTTTGAATCTTCCAGAGACATCGAAAGATCTTCTTACTTATTGTGCCCTTTTGAACT
GCTACTGCAAAGAATTAATGACTGAAAAAGCTGAGGCTTTGATGGAGAAAGTGAAAGAAC
TTAACTTAAGTTTAAGCTCCATGCCTTACAACAGCTTGATGACTCTTTACACAAAAACTG
GGCACCCAGAAAAAATCCCAGCCATTATTCAAGAAATGAAGGCCAATGATGTTATGCCAG
ATTCTTATACCTACAACGTCTGGATGAGGGCTCTTTCTTCTATGAATGATATTTCTGGGG
TTGAGAGGGTTGTTGATGAAATGAAGAGGGATGGCCGTGTTGCTGAAGATTGGACTACAT
ATAGTAATTTGGCATCGATCTATGCAGATGCTGGCTTAACTGATAAAGCAGTGAAGGCAC
TCAAGGAATTGGAGAAGAAAAATGCATGCCGCAATATTACTGCATACCAGTTTCTGATCA
CACTGTATGGTCGTGTTGGAACTTTGCTTGAAGTATATCGTGTATGGCGTTCTTTGAGGC
TTGCTTTTCCCAGAACAGCAAACATAAGCTATCTTAACATGATCCAAGTTTTAGTAAATT
TGAATGACTTACCAGGTGCTGAGAAATGTTTCAAGGAATGGGAGTCTGGATGCCCAACTT
ATGACATACGTATAGCAAATGTTCTTATAGGAGCTTACACTAAACAAAGTTCCCTGGAGA
AAGCTGAACAGCTCAAGGAACGGGCACGAAGGAGTGGAGCTAAGCCCAATGCTAAGACAT
GGGAGATCTTCATGGACTATTATCTGCAAAGCGGGGATATCAAATCAGCAATTGATTGTG
TGGACAAAGCAGTTTCAATTGGAAGGGGTGATGGCAGCAAGTGGTTTCCATCATCTGCCA
TTGTAACAAAATTCATGAGTCATTTTAAACAACATAAAGATGTCGCTGGTGCAGAACACT
TTGTGGAAATGTTGAAGAAGGCTAAGGATGAGTTGGGGGTTGACATATTTGAATCTTTAT
TACGAACTTATATAGCTTCTGAAAAAACAAGTCCTATCATGCGTCGGCGTATAAAAATGG
AAAACATAGAGCTGACTGATGAAGGTAAAAGATTGCTGGATGCTGTTTCTGTGGAGTGAG
ATCATTTATAAAGTAATTGACATGCCTTGAGCTTTCAGAAACTGAATCGCAGAGATGTGA
GTTTTCAGCATGTTGTTGCAATTGAGATTTTCTAGTTTACTACTCTTTTGAATGGTTTCT
TGGATTGTTCATATCTGATTAGCACATGCATGGTTCAAAATTTCCTGCATCAGTGTAAAC
ACGCTCTGGACACATATAGGATTCCATCTAGATAAAAAATAGTGAATAAACAGACGAGCT
TTGTTGCTGCCCGAGGTGCTCGAGAGAATGCCCTAAACAACTCAATTCTGGTGTTTCTGG
AGAGTTGAATTTGACGTTTAATGGATTTTGGTTTCCTACTGAAAGCTCTTTTTCTTTTTG
GAAGAAATGTACTGTTTGAGTTTTTCGTAGATTACTACAATTTGTTCGCTAATATCTATA
CGTTTTTTCCATTTTTTTTTTAAATAGGTAACTTATCTACACTTCTTTTCCATTTGTATG
TGAATTTCTGAGTTACTACTTAGTTTCCTACTGTTCGTGATGAACATCTAAATATCTGAC
TCTTATTTCTTTTTAGAGATCATCGATTCAGAACCTTCATTTGGCATATGAAAGTCTTTT
TACACTTG