Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g006030.1.1
CDS Infomation

U-box domain-containing family protein (AHRD V3.3 *** U5FLQ4_POPTR)
Sequence

ATGATTTTTTCGTGGATACGTAAAAAGAAGGTTACAAAATTGAACTCTTGTAAAGAACTT
ACGATTCCATCTCATTTTCTTTGTCCGATTTCTCTTGATTTAATGAAAGATCCAGTCACA
TTATGTACTGGAATTTCATATGATCGTGAAAACATCGAGAAATGGATCGAGGCACGGAAC
TCAACGTGCCCCGTGACGAATCAACATTTGAGAAATTTCAATCTCATACCAAACCATGCC
ATAAGGAAAACGATTCAAGATTGGTGTGTGGAGAACAAAAACTATGGCATTGAAAGAGTT
CCAACTCCTAGAATTCCAATCGATTCGTCTCAAGTAACGGAGATTTGCTCGAGGCTAATG
ATTGAAGCTCGACGAGGGAACGAGATGAAATGCAGAGAGTTAGTTGGACGAGTCAGGATT
TTAGCTAAAGAGAGCGATAGAAACAAGAAATGCATAGTGGAATGTGGGGTAGGTTATGTT
TTTGCAACATGTTTCGAGATTTTCTCTATGGGAATTCAGGATGAACTCTTGAAGGACTTG
TTATCGGCGATGACGTGGATGTTTCCTATTGGTCAAGAGGGGATATCGAAACTCGTGTCA
TCGACGTCTTTACGTTGCATGGCAAGGTTCATGAAAGGTGAAGATTTATCAGCAAGACAA
AACGTAGTTATAGTCATGAAGGAATTGCTCTATTATGACCAAAGTTGCACAAATGTGTTA
ATAGATATCGAAGATTTGGTTGAATCTTTGTACCAAATGGTGAAAGTACCGATTTGCCCC
TCCACGACGAAAGCGTCGTTAACGGTGATATACTCTATTATCTCATATACATCAAGTGAA
AATAACAAGAAAATTGTGTCTAAATTTGTAAACATGGGGATTGTTTGTTTGGTTGTTGAA
ATGCTTGTGGATTGTGAAAAGAGTATAATAGAGAAGGGGTTGGCTATTTTGGACATAATT
TGCAATTTTGAAGAAGGGAAACAAAAGGCTTATGAACATGGATTGACTATGGCAATAATA
GCCAAAAAAATAATGAGAGTTACAGAAATGGCCACAGAATGTTCAACTTCAATTTTGTGG
AAACTTTGCAAAAGTGGAAATAATGAGAATAATTCAGTAATTGAGGCATTGGAATTAGGT
GTATTTCAAAAATTATTGGTGGTTTTACAAGTGGGATGTGGTGAAAAAACTAAGGAAAAA
GCTACTGAATTGTTGAAATTGATGAATCTTTACAAAGATAGAGTGGATTGCTTTGATGGA
TCAACTTTCAAGTATCTCAAGAAGTCATATTGA

Peptide Sequence

PEP ID

Solyc11g006030.1.1
PEP Infomation

U-box domain-containing family protein (AHRD V3.3 *** U5FLQ4_POPTR)
Sequence

MIFSWIRKKKVTKLNSCKELTIPSHFLCPISLDLMKDPVTLCTGISYDRENIEKWIEARN
STCPVTNQHLRNFNLIPNHAIRKTIQDWCVENKNYGIERVPTPRIPIDSSQVTEICSRLM
IEARRGNEMKCRELVGRVRILAKESDRNKKCIVECGVGYVFATCFEIFSMGIQDELLKDL
LSAMTWMFPIGQEGISKLVSSTSLRCMARFMKGEDLSARQNVVIVMKELLYYDQSCTNVL
IDIEDLVESLYQMVKVPICPSTTKASLTVIYSIISYTSSENNKKIVSKFVNMGIVCLVVE
MLVDCEKSIIEKGLAILDIICNFEEGKQKAYEHGLTMAIIAKKIMRVTEMATECSTSILW
KLCKSGNNENNSVIEALELGVFQKLLVVLQVGCGEKTKEKATELLKLMNLYKDRVDCFDG
STFKYLKKSY*

Transcript Sequence

Transcript ID

Solyc11g006030.1.1
Transcript Infomation

U-box domain-containing family protein (AHRD V3.3 *** U5FLQ4_POPTR)
Sequence

ATGATTTTTTCGTGGATACGTAAAAAGAAGGTTACAAAATTGAACTCTTGTAAAGAACTT
ACGATTCCATCTCATTTTCTTTGTCCGATTTCTCTTGATTTAATGAAAGATCCAGTCACA
TTATGTACTGGAATTTCATATGATCGTGAAAACATCGAGAAATGGATCGAGGCACGGAAC
TCAACGTGCCCCGTGACGAATCAACATTTGAGAAATTTCAATCTCATACCAAACCATGCC
ATAAGGAAAACGATTCAAGATTGGTGTGTGGAGAACAAAAACTATGGCATTGAAAGAGTT
CCAACTCCTAGAATTCCAATCGATTCGTCTCAAGTAACGGAGATTTGCTCGAGGCTAATG
ATTGAAGCTCGACGAGGGAACGAGATGAAATGCAGAGAGTTAGTTGGACGAGTCAGGATT
TTAGCTAAAGAGAGCGATAGAAACAAGAAATGCATAGTGGAATGTGGGGTAGGTTATGTT
TTTGCAACATGTTTCGAGATTTTCTCTATGGGAATTCAGGATGAACTCTTGAAGGACTTG
TTATCGGCGATGACGTGGATGTTTCCTATTGGTCAAGAGGGGATATCGAAACTCGTGTCA
TCGACGTCTTTACGTTGCATGGCAAGGTTCATGAAAGGTGAAGATTTATCAGCAAGACAA
AACGTAGTTATAGTCATGAAGGAATTGCTCTATTATGACCAAAGTTGCACAAATGTGTTA
ATAGATATCGAAGATTTGGTTGAATCTTTGTACCAAATGGTGAAAGTACCGATTTGCCCC
TCCACGACGAAAGCGTCGTTAACGGTGATATACTCTATTATCTCATATACATCAAGTGAA
AATAACAAGAAAATTGTGTCTAAATTTGTAAACATGGGGATTGTTTGTTTGGTTGTTGAA
ATGCTTGTGGATTGTGAAAAGAGTATAATAGAGAAGGGGTTGGCTATTTTGGACATAATT
TGCAATTTTGAAGAAGGGAAACAAAAGGCTTATGAACATGGATTGACTATGGCAATAATA
GCCAAAAAAATAATGAGAGTTACAGAAATGGCCACAGAATGTTCAACTTCAATTTTGTGG
AAACTTTGCAAAAGTGGAAATAATGAGAATAATTCAGTAATTGAGGCATTGGAATTAGGT
GTATTTCAAAAATTATTGGTGGTTTTACAAGTGGGATGTGGTGAAAAAACTAAGGAAAAA
GCTACTGAATTGTTGAAATTGATGAATCTTTACAAAGATAGAGTGGATTGCTTTGATGGA
TCAACTTTCAAGTATCTCAAGAAGTCATATTGA