Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g005770.2.1
CDS Infomation

pectinesterase family protein
Sequence

ATGCACTTAAGAAAACCTGCAAAACCCACACTATTCCGAAAATTTAAGCTTCTGTTCATT
TCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTTCTTCTCTATTTCC
TCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCAGATCCGTGGTGCT
TGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGATTCCGGTTACTTA
CCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGTATCATCGAAGAAC
AACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGACAGGGAATAATCAG
AACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGCGGAGTATCGGGTC
GGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCGTGCATGGATGAGC
TCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGTTAATGGCACCTCC
CAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAGCAGCAATGCATTG
GGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATGGACCGTACCCAAA
ACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGGGTCGGGTCAGGTG
AAGGGTGGAGTGCCGACCGGGTTGAAACCGGATGTAACGGTGTGTAAGGAAGGAGGATGT
GACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAG
TTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAG
ATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGT
GTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTGGAGTTGTTGGTGATGGA
TTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTA
GCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAA
GACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAAT
GTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCA
CCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGCTCATGGCAGGATA
GACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAATGGAACTGATAAA
TACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCTGGGAAGACCATGG
AAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCTTATATCGCCTAAC
GGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTACGGAGAATATAGA
AATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGTGGAGTAGCCAAATCCCAGAT
GAACATGTTAACTCATACTCTATACAAAATTTCATTCAATGGATTTCGACTTCCTCTTGA

Peptide Sequence

PEP ID

Solyc11g005770.2.1
PEP Infomation

pectinesterase family protein
Sequence

MHLRKPAKPTLFRKFKLLFISMASFFTLTIFSLILFFSISSAARHHSSTSPSISLQIRGA
CKASRDPPTCESVLTDSGYLPSELTTSLIIQSAVKVSSKNNDKAKEMVQAIIDASTGNNQ
NRTDAGKVCMEVLGYAEYRVGLTGQAVINGGYKSARAWMSSVMVYQYDCWSALKYVNGTS
QVSKTMSFINSLIGYSSNALGMMVNFDLYGADTGSWTVPKTERDGFWEGSGSGSSGSGQV
KGGVPTGLKPDVTVCKEGGCDYKTVQEAVNAAPEKEQTRKFVIWIKSGLYEEKVRVGLEK
MNVVFLGDGMGKTVITGSLSVGLAGVTTYETATVGVVGDGFMASGITFQNTAGPDAHQAV
AFRSDSDLSAVENCEFIGNQDTLYAHALRQYYKSCRIQGNVDFIFGNSASFFQDCDILIA
PRQLRPEKGETNAVTAHGRIDPAQSTGFVFQNCLINGTDKYMTLYYNKPKVHKNFLGRPW
KEYSRTVFLDCTLEALISPNGWLPWSGDFALKTLYYGEYRNTGAGANTAGRVSWSSQIPD
EHVNSYSIQNFIQWISTSS*

Transcript Sequence

Transcript ID

Solyc11g005770.2.1
Transcript Infomation

pectinesterase family protein
Sequence

AAATATTTACTGAGATCAAGTTTATTAAACAATAAAAGGCACATTTTGCCGATGTCTAAT
CGAACACCGCCACTATTTTTTTCTTCTTCTTCCTCATTGCCATCACTGTTCACTATCCAC
TCCCGTGAACTTTCACTTTCGTCCAAATTCACCAAACCCCATTCTATATTCACACTGTAA
TTCAATTATCTTCTTGAAATTGTACAGTTTTTTGGCATTTACAGCCACAAATTTGTATAA
AAGGGTACCTACAATGCACTTAAGAAAACCTGCAAAACCCACACTATTCCGAAAATTTAA
GCTTCTGTTCATTTCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTT
CTTCTCTATTTCCTCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCA
GATCCGTGGTGCTTGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGA
TTCCGGTTACTTACCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGT
ATCATCGAAGAACAACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGAC
AGGGAATAATCAGAACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGC
GGAGTATCGGGTCGGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCG
TGCATGGATGAGCTCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGT
TAATGGCACCTCCCAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAG
CAGCAATGCATTGGGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATG
GACCGTACCCAAAACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGG
GTCGGGTCAGGTGAAGGGTGGAGTGCCGACCGGGTTGAAACCGGATGTAACGGTGTGTAA
GGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGA
GCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGT
CGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTAC
GGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTGGAGT
TGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGC
TCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATT
CATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCG
TATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGA
CATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGC
TCATGGCAGGATAGACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAA
TGGAACTGATAAATACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCT
GGGAAGACCATGGAAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCT
TATATCGCCTAACGGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTA
CGGAGAATATAGAAATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGTGGAGTAG
CCAAATCCCAGATGAACATGTTAACTCATACTCTATACAAAATTTCATTCAATGGATTTC
GACTTCCTCTTGATTAACTTATAGTAATGTTTAATGTACATCGAGTAAGTCAAGCTCAAT
ATATAACCGGGGAATCACAGTAGCTCAACTGGTTAGCTATCTGAACTCGCATCATATCGT
TTCGATTCTCCACATTGTTATGTAATCCCCTCCCCCTATACCTACCCCGATCGTTTTTTT
TTTCTTGAAAAAAATCAATATATAACCTCTTGTACCAAATTGTTGGAAAATTTTGAAACT
TGTTATAATATGAGTTATATATTGCTAAAGTCTTATATTA