Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc10g086530.1.1
CDS Infomation	GRAS family transcription factor (AHRD V3.3 *** A0A072U0I2_MEDTR)
Sequence	ATGGATCCAAGGTTCAATAGATTTCCAACAACTGTAAATGGATTCAATCTGGAGAACCAA TCCTTACTAAGCTTTTCGGATAATTGGAAGAATAATGAACCTATAATTGGGGCTATTTAT CCAGATCAGAAAATAGTCAATGCTCCAACATTTGAAAATAGTTTTATCCAACAGACTGTT CCATCTCTTTCAAATGACCCTTCCACAACAAGCAATATAGCATTGACTTCTGAGATGGGT ACTGAGGATGAATACAATGAAGATTTTGATTTCTCCGATACGGTTTTGAGCTATATAAAT CAGATGCTCATGGAAGAAGATATGGAGGACAAGACACATATGCTTCACGAGTCGTTGGAA CTTCAAGCAAAAGAGAGATCATTTTATGAGGCCCTTGGCAAGAAGTATCCGCCTTCACCT CACCAGAACCTGGCCATTACTGAACAGAACGGTGAGATACCGGAGGACTATTACTCAGCA AGTCTGTATAGCTCTACAAGTAATGTCATTGACACTAGTGGTTACCTAATTGATCCAAGC ATTTCAAATGATCATAATTACTCTTACGAACAAGGCCTTTTTATTTGTAATGGTCCTTAC TCTTCGATTAGCTCATCGAATAGCATAAATAATCTTGGAGATGGGTTCTTGGACTCTCCT GTAAGTCCTCTTCATATACCTGATATATACAATGATAGTCACCCAATTTGGAAATTTAGG AAAGGAGTGGAAGAAGCGAGCAAATTCCTACCTACTTATAGTAAGTTGTTGGACAATGTG GTTATCAACGACTTGCTACCTCAGGCGAAAAGAGGAGAAAGTGGTTGTGCGGCAGCTCAA GTGGAGAAACGGGATGTGGGAGCGACTTCACCTACCGGACCGAGAGGGACGAAAAATCCT CATAGAGATGATAGGGATTCAGAAGAAGAAGAAGAAAGAAGAAGCAAGCAAGCTGCAGTT TATGCAGAATCTACAGTTCGCTCAGATGAGTTTGATGTAATTTTGTTGCATAGCATGGGG GATGGAAGGGAAGCATTGACAGCTTATCGTGAGAGCTTGAAGAACGCTAGAACAAAACCT ACAGTGCAATCAAAAGGATTTGCTGTAGGGAGAGGAGGCCGCGGGAAGAAACAGTCTGGT AAAAAGGAAGTCATAGATTTAAGGTCTCTTTTAATAAATTGTGCACAGGCTGTTGCTGCT GATGACTGCAGGAGTGCAACTGAACTGCTGAAACAGGTTAGACTCCATTCATCTCCTTTT GGAGATGGCAACCAGAGATTAGCTCATTGTTTTGCAGATGGTCTGGAAGCACGTTTGGCA GGCACTGGTAGCCAGATTTATAAGGCCCTCGTCAATAAACGAACATCAGCAGCTGATTTT TTAAAGGCCTATCATTTGTATCTTGCATCATGCCCATTCAGAAAGATTTCAGGTTTTACC TCAAACAAGACGATCATTAGAAAATCAAAGCATGCTACAAGGGTCCACATCATTGACTTT GGCATCCTCTATGGCTTTCAATGGCCTACGCTTATTCAACGTATTGCAGCAAGAGAAGGT GGACCACCAAATCTTCGTATAACTGGTATAGAATTTCCTCAACCTGGCTTCAGGCCAGCA GAAAGGATTGAGGAAACAGGACGCCGTTTGAGCGATTATGCCAAGTCCTTTAATGTTCCA TTTGAGTACCAAGCAATAGCAAAGAAATGGGAAACCATCAGAGTTGAGGATCTAAAGCTT GAAAAGGATGAGTATCTTGTTGTCAATTGTTTGTATAGATTTAAGAACTTGCACGATGAG ACCGTGTTATCTGACAGTTCGAGAACTCTCGTTCTCAATCTAATAAGGGAGATCAATCCA GACATTTTCATCCATGGGATTGTAAATGGGGCCTATAGTGCCCCATTCTTTGTCACACGG TTCCGTGAGGTCCTGTTTCATTTTTCAGCACTTTTTGATATGCTGGAAGCTAATGTGCCC CGGGAGTTTCCGGAAAGACTGTTAATTGAGAGAGAGATCTTTGGGAGGGAAGCCCTCAAT GTCATAGCTTGTGAGGGATGGGAAAGAGTTGAAAGGCCAGAGACATACAAGCAGTGGCAA GTTCGTCATCTAAGGGCAAGGTTTACACAAACACCTTTTGAGCAAGAGGAGATCATGAAT ATGGCAGTTAAAAAGGTGAGAACAAGCTATCACAAAGACTTTATAATCGATCAAGATAAC AAGTGGATGTTGCTGGGGTGGAAAGGGAGAACGATCTACGCCTTATCTTGTTGGACACCT ATTTAA

Peptide Sequence

PEP ID	Solyc10g086530.1.1
PEP Infomation	GRAS family transcription factor (AHRD V3.3 *** A0A072U0I2_MEDTR)
Sequence	MDPRFNRFPTTVNGFNLENQSLLSFSDNWKNNEPIIGAIYPDQKIVNAPTFENSFIQQTV PSLSNDPSTTSNIALTSEMGTEDEYNEDFDFSDTVLSYINQMLMEEDMEDKTHMLHESLE LQAKERSFYEALGKKYPPSPHQNLAITEQNGEIPEDYYSASLYSSTSNVIDTSGYLIDPS ISNDHNYSYEQGLFICNGPYSSISSSNSINNLGDGFLDSPVSPLHIPDIYNDSHPIWKFR KGVEEASKFLPTYSKLLDNVVINDLLPQAKRGESGCAAAQVEKRDVGATSPTGPRGTKNP HRDDRDSEEEEERRSKQAAVYAESTVRSDEFDVILLHSMGDGREALTAYRESLKNARTKP TVQSKGFAVGRGGRGKKQSGKKEVIDLRSLLINCAQAVAADDCRSATELLKQVRLHSSPF GDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTSAADFLKAYHLYLASCPFRKISGFT SNKTIIRKSKHATRVHIIDFGILYGFQWPTLIQRIAAREGGPPNLRITGIEFPQPGFRPA ERIEETGRRLSDYAKSFNVPFEYQAIAKKWETIRVEDLKLEKDEYLVVNCLYRFKNLHDE TVLSDSSRTLVLNLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVP REFPERLLIEREIFGREALNVIACEGWERVERPETYKQWQVRHLRARFTQTPFEQEEIMN MAVKKVRTSYHKDFIIDQDNKWMLLGWKGRTIYALSCWTPI*

Transcript Sequence

Transcript ID	Solyc10g086530.1.1
Transcript Infomation	GRAS family transcription factor (AHRD V3.3 *** A0A072U0I2_MEDTR)
Sequence	ATGGATCCAAGGTTCAATAGATTTCCAACAACTGTAAATGGATTCAATCTGGAGAACCAA TCCTTACTAAGCTTTTCGGATAATTGGAAGAATAATGAACCTATAATTGGGGCTATTTAT CCAGATCAGAAAATAGTCAATGCTCCAACATTTGAAAATAGTTTTATCCAACAGACTGTT CCATCTCTTTCAAATGACCCTTCCACAACAAGCAATATAGCATTGACTTCTGAGATGGGT ACTGAGGATGAATACAATGAAGATTTTGATTTCTCCGATACGGTTTTGAGCTATATAAAT CAGATGCTCATGGAAGAAGATATGGAGGACAAGACACATATGCTTCACGAGTCGTTGGAA CTTCAAGCAAAAGAGAGATCATTTTATGAGGCCCTTGGCAAGAAGTATCCGCCTTCACCT CACCAGAACCTGGCCATTACTGAACAGAACGGTGAGATACCGGAGGACTATTACTCAGCA AGTCTGTATAGCTCTACAAGTAATGTCATTGACACTAGTGGTTACCTAATTGATCCAAGC ATTTCAAATGATCATAATTACTCTTACGAACAAGGCCTTTTTATTTGTAATGGTCCTTAC TCTTCGATTAGCTCATCGAATAGCATAAATAATCTTGGAGATGGGTTCTTGGACTCTCCT GTAAGTCCTCTTCATATACCTGATATATACAATGATAGTCACCCAATTTGGAAATTTAGG AAAGGAGTGGAAGAAGCGAGCAAATTCCTACCTACTTATAGTAAGTTGTTGGACAATGTG GTTATCAACGACTTGCTACCTCAGGCGAAAAGAGGAGAAAGTGGTTGTGCGGCAGCTCAA GTGGAGAAACGGGATGTGGGAGCGACTTCACCTACCGGACCGAGAGGGACGAAAAATCCT CATAGAGATGATAGGGATTCAGAAGAAGAAGAAGAAAGAAGAAGCAAGCAAGCTGCAGTT TATGCAGAATCTACAGTTCGCTCAGATGAGTTTGATGTAATTTTGTTGCATAGCATGGGG GATGGAAGGGAAGCATTGACAGCTTATCGTGAGAGCTTGAAGAACGCTAGAACAAAACCT ACAGTGCAATCAAAAGGATTTGCTGTAGGGAGAGGAGGCCGCGGGAAGAAACAGTCTGGT AAAAAGGAAGTCATAGATTTAAGGTCTCTTTTAATAAATTGTGCACAGGCTGTTGCTGCT GATGACTGCAGGAGTGCAACTGAACTGCTGAAACAGGTTAGACTCCATTCATCTCCTTTT GGAGATGGCAACCAGAGATTAGCTCATTGTTTTGCAGATGGTCTGGAAGCACGTTTGGCA GGCACTGGTAGCCAGATTTATAAGGCCCTCGTCAATAAACGAACATCAGCAGCTGATTTT TTAAAGGCCTATCATTTGTATCTTGCATCATGCCCATTCAGAAAGATTTCAGGTTTTACC TCAAACAAGACGATCATTAGAAAATCAAAGCATGCTACAAGGGTCCACATCATTGACTTT GGCATCCTCTATGGCTTTCAATGGCCTACGCTTATTCAACGTATTGCAGCAAGAGAAGGT GGACCACCAAATCTTCGTATAACTGGTATAGAATTTCCTCAACCTGGCTTCAGGCCAGCA GAAAGGATTGAGGAAACAGGACGCCGTTTGAGCGATTATGCCAAGTCCTTTAATGTTCCA TTTGAGTACCAAGCAATAGCAAAGAAATGGGAAACCATCAGAGTTGAGGATCTAAAGCTT GAAAAGGATGAGTATCTTGTTGTCAATTGTTTGTATAGATTTAAGAACTTGCACGATGAG ACCGTGTTATCTGACAGTTCGAGAACTCTCGTTCTCAATCTAATAAGGGAGATCAATCCA GACATTTTCATCCATGGGATTGTAAATGGGGCCTATAGTGCCCCATTCTTTGTCACACGG TTCCGTGAGGTCCTGTTTCATTTTTCAGCACTTTTTGATATGCTGGAAGCTAATGTGCCC CGGGAGTTTCCGGAAAGACTGTTAATTGAGAGAGAGATCTTTGGGAGGGAAGCCCTCAAT GTCATAGCTTGTGAGGGATGGGAAAGAGTTGAAAGGCCAGAGACATACAAGCAGTGGCAA GTTCGTCATCTAAGGGCAAGGTTTACACAAACACCTTTTGAGCAAGAGGAGATCATGAAT ATGGCAGTTAAAAAGGTGAGAACAAGCTATCACAAAGACTTTATAATCGATCAAGATAAC AAGTGGATGTTGCTGGGGTGGAAAGGGAGAACGATCTACGCCTTATCTTGTTGGACACCT ATTTAA