Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc10g083800.2.1
CDS Infomation	RING/FYVE/PHD zinc finger protein (AHRD V3.3 *** A0A072VVJ3_MEDTR)
Sequence	ATGACGGCAAAAACAAACCGTGAATTTGACATTTCATCGCCGGCGGAGGAAAAACCGCCG GCTCAATATCGGGTACCAGAAACCGAACCGGAAACCGGTGATCTGAACCGGCGTAAGCCG GACGAACCTCAGGTTAAGGTTAGTGGTAGTAACGGCGTCGTTGTATACAGGAGGAACAAG AGGCGGAAGACGGCAGATTCAAACCGAAATTCAAGTGGTAAAGTTGTAAATATGGATGTG ACGAAGGGTAATTTAGGAATTTCAGCGAATAACGGTGATGTTGTGGAGGTTGAAGTGAAA GAAGAGACGAGGAGTAAGCGGTTAACACGGTCCGCTTTGGGGAGGAAGAGGGAGCTGTTG GAGATTACGAATGGGAACTCTGGAGGTGAAGTTGATGAGGGAAGTGGTGTAGTTATCTCT GGTACACCTACGAAGAAACTAGAAATGAAAATGTCGAAGAAGATTTCAATTACGGTAATA CCTGAAACGGTGAAGGAGCTGTTTGAGACTGGTTTACTGGAAGGCTATCCTGTTTTCTAC AACGGTGGGAAGAAGGGAATTCCACTCCGAGGAACAATTAAAGATACTGGAATTCTTTGT TCTTGTGAACTATGCAAGGGAGCTACAGTTGTGCCTCCTAGCAAATTTGAGATCCATGCT TGTAATTCATATAGACGTGCGTCAGAGTATATCTGCCTAGAAAATGGCAAGAGCCTCCTC GACGTGGTCAAAGAGTGTAGAAAAGGTTCCTTGAAAACATTAGAAGAAACAATTCAGAGT GTCATCGGTCCAGTTCCTGTGAAGAAAAGTCTTTTTTGTCGGGATTGCAAGGGGTCTTTT GTTGCAACACTAGCTGGAAATGATGAACAACTTTGTGATTCATGCATAGTTTCCTTAAGA TCAGAAGCCACTCCAACACAGTCGATAAACACTGAAAATGCGGTGTTCGAGCCAGTTCTG AACTTAAATTCCTCTGGAACTTCAAATATGTCGTCTGTTTCACTAAGAAGCGTTAAGGGA AGGAAAAAGAAAAAGGTCGCGATAAAGCATTCGCGTAGACAGTCTCCTTCAGCGCATACT CTCTCCAGAAAAAAGTGGAAGACACCAAATAAGGTAACGAAGCCAGTTTTTGCTCCAAAG TCGGATGAAACGTCTATAACGTGCAGTTCATTCAGAAACAACATGCAGGGGAACATCTCA GAAAAATTGTCAAAATCAGTTTTAGTTACAAAGTATTCTAAAGTTGCTTCGCCTGGTGTC TCGGTGCACTCTAGGACCCAATGGAAAATGACAAAAAGGGATCAAAAGATGCATAGATTG GTTTTTGAGGAAGGTGGACTGCCTGAAGGAACTGAAGTAGCTTATTATTCTCGTGGAAAG AAATTGCTTGTTGGTTATAAGAAGGGATCTGGTATATTCTGTTCTTGCTGCAATACTGAG GTTAGTCCATCTCAGTTTGAAGCTCATGCAGGTTGGGCATCGCGCAAAAAACCTTATGGG TATATTTACACGTCTAATGGAGTTTCGCTACATGAATTTGCTATATCTCTATTAAAAGGC CGCAAGTCTTCAGTTAAAGACAGTGATGACTTGTGCATCATATGCGCAGATGGTGGTAAA CTAGTGCTTTGTGATGGATGTCCTAGGGCTTTCCATAAAGAGTGTGCATCATTATCAACT ATCCCTCGTGGTAAATGGTACTGCAAGTATTGTGAAAGCATGTTACAGAGGGAGAAGTTT GCGGAGCGCAATACGAATGCCTTAGCAGCCGGCAGGATCTCCGGCATTGATCCTATTGAG CAAATAACAAACCGTTGCATTCGTTTTGTCAAGAATGCAGAAGAGGCAGAATTTATTGCA TGTGTTTTATGCAGAGCTTATGACTTTAGCAAGTCTGGTTTTGGTCCACGGACTGTCATT CTTTGTGACCAGTGCGAGAAAGAGTATCATGTTGGCTGCTTGAAGAAAAGCAAGATAGCA GATTTAAAGGAATTGCCTAAAGGAAAATGGTTCTGTAGTGTGGATTGCAAGAGGATCTAT TGTGCCCTGCAAAATTTGCTTAACTCAGGAGAAGAGAGGTTGCCTGATTCTTGTTTGGAT GCAGGAAGAGTTAAGGAAAAACATAACAGTTTGGTTGCTGTTGGTGAACTTGATGTTAGA TGGAGGCTTCTTAGTGGCAGAATTTCCTCCCGTGAAACCAGAAGGCTACTGGCAGAAGCT GTTTCTATCTTCCATGATGGTTTCGATCCTATTGTTGATTCAGTAACTGGACGTGACTTC ATTCCTTCTATGGTTTATGGAAGGAATATTAGGGGCCAAGACTTTGGGGGCATGTATTGC GCTATATTGACTGTAAACTCAACAGTAATATCAGCAGGGATCCTCCGGATTTTTGGCCAG GATATGGCAGAACTCCCTCTTGTGGCAACCCGTGTTGGTAGCCAAGGCAAGGGATACTTT CAGTTGCTGTTCTCCTGCATAGAAAAATTGCTTGCATTTTTGGGCGTGAGACGCTTTGTA CTCCCAGCTGCTGTTGAAGCTATGTCGATTTGGACTAAGAAATTTGGATTTGAGGAGTTA ACACCAGAGCAGCTTGTCAGCTACAGAAAAACTTGTTGGCAAATGATTAGCTTTAAAGGC ACATCTATGCTGGAAAAAATGGTTCCTAAATGTAGAATCATTAAACAAGGGGAAGGTGAA ACTGATGTTCCAGATGAGTAG

Peptide Sequence

PEP ID	Solyc10g083800.2.1
PEP Infomation	RING/FYVE/PHD zinc finger protein (AHRD V3.3 *** A0A072VVJ3_MEDTR)
Sequence	MTAKTNREFDISSPAEEKPPAQYRVPETEPETGDLNRRKPDEPQVKVSGSNGVVVYRRNK RRKTADSNRNSSGKVVNMDVTKGNLGISANNGDVVEVEVKEETRSKRLTRSALGRKRELL EITNGNSGGEVDEGSGVVISGTPTKKLEMKMSKKISITVIPETVKELFETGLLEGYPVFY NGGKKGIPLRGTIKDTGILCSCELCKGATVVPPSKFEIHACNSYRRASEYICLENGKSLL DVVKECRKGSLKTLEETIQSVIGPVPVKKSLFCRDCKGSFVATLAGNDEQLCDSCIVSLR SEATPTQSINTENAVFEPVLNLNSSGTSNMSSVSLRSVKGRKKKKVAIKHSRRQSPSAHT LSRKKWKTPNKVTKPVFAPKSDETSITCSSFRNNMQGNISEKLSKSVLVTKYSKVASPGV SVHSRTQWKMTKRDQKMHRLVFEEGGLPEGTEVAYYSRGKKLLVGYKKGSGIFCSCCNTE VSPSQFEAHAGWASRKKPYGYIYTSNGVSLHEFAISLLKGRKSSVKDSDDLCIICADGGK LVLCDGCPRAFHKECASLSTIPRGKWYCKYCESMLQREKFAERNTNALAAGRISGIDPIE QITNRCIRFVKNAEEAEFIACVLCRAYDFSKSGFGPRTVILCDQCEKEYHVGCLKKSKIA DLKELPKGKWFCSVDCKRIYCALQNLLNSGEERLPDSCLDAGRVKEKHNSLVAVGELDVR WRLLSGRISSRETRRLLAEAVSIFHDGFDPIVDSVTGRDFIPSMVYGRNIRGQDFGGMYC AILTVNSTVISAGILRIFGQDMAELPLVATRVGSQGKGYFQLLFSCIEKLLAFLGVRRFV LPAAVEAMSIWTKKFGFEELTPEQLVSYRKTCWQMISFKGTSMLEKMVPKCRIIKQGEGE TDVPDE*

Transcript Sequence

Transcript ID	Solyc10g083800.2.1
Transcript Infomation	RING/FYVE/PHD zinc finger protein (AHRD V3.3 *** A0A072VVJ3_MEDTR)
Sequence	TTTCTCACTTGCTACTTCTTAACTCTCCAATCCCCATTCGTCTTCCTTATTCCATCGGCC GAAGGGTTACATAAATACTGTTCCTTAGCATAAACGCCCATTTCATGCTTTTGAATTCTC TCTTCTTTTACAGATCCATAGTTCAATTCTCTCTCTTTGAGTTGTTGTTGTTGTGTTCAC ACTAATCGGAACACATCAGAACCAATGACGGCAAAAACAAACCGTGAATTTGACATTTCA TCGCCGGCGGAGGAAAAACCGCCGGCTCAATATCGGGTACCAGAAACCGAACCGGAAACC GGTGATCTGAACCGGCGTAAGCCGGACGAACCTCAGGTTAAGGTTAGTGGTAGTAACGGC GTCGTTGTATACAGGAGGAACAAGAGGCGGAAGACGGCAGATTCAAACCGAAATTCAAGT GGTAAAGTTGTAAATATGGATGTGACGAAGGGTAATTTAGGAATTTCAGCGAATAACGGT GATGTTGTGGAGGTTGAAGTGAAAGAAGAGACGAGGAGTAAGCGGTTAACACGGTCCGCT TTGGGGAGGAAGAGGGAGCTGTTGGAGATTACGAATGGGAACTCTGGAGGTGAAGTTGAT GAGGGAAGTGGTGTAGTTATCTCTGGTACACCTACGAAGAAACTAGAAATGAAAATGTCG AAGAAGATTTCAATTACGGTAATACCTGAAACGGTGAAGGAGCTGTTTGAGACTGGTTTA CTGGAAGGCTATCCTGTTTTCTACAACGGTGGGAAGAAGGGAATTCCACTCCGAGGAACA ATTAAAGATACTGGAATTCTTTGTTCTTGTGAACTATGCAAGGGAGCTACAGTTGTGCCT CCTAGCAAATTTGAGATCCATGCTTGTAATTCATATAGACGTGCGTCAGAGTATATCTGC CTAGAAAATGGCAAGAGCCTCCTCGACGTGGTCAAAGAGTGTAGAAAAGGTTCCTTGAAA ACATTAGAAGAAACAATTCAGAGTGTCATCGGTCCAGTTCCTGTGAAGAAAAGTCTTTTT TGTCGGGATTGCAAGGGGTCTTTTGTTGCAACACTAGCTGGAAATGATGAACAACTTTGT GATTCATGCATAGTTTCCTTAAGATCAGAAGCCACTCCAACACAGTCGATAAACACTGAA AATGCGGTGTTCGAGCCAGTTCTGAACTTAAATTCCTCTGGAACTTCAAATATGTCGTCT GTTTCACTAAGAAGCGTTAAGGGAAGGAAAAAGAAAAAGGTCGCGATAAAGCATTCGCGT AGACAGTCTCCTTCAGCGCATACTCTCTCCAGAAAAAAGTGGAAGACACCAAATAAGGTA ACGAAGCCAGTTTTTGCTCCAAAGTCGGATGAAACGTCTATAACGTGCAGTTCATTCAGA AACAACATGCAGGGGAACATCTCAGAAAAATTGTCAAAATCAGTTTTAGTTACAAAGTAT TCTAAAGTTGCTTCGCCTGGTGTCTCGGTGCACTCTAGGACCCAATGGAAAATGACAAAA AGGGATCAAAAGATGCATAGATTGGTTTTTGAGGAAGGTGGACTGCCTGAAGGAACTGAA GTAGCTTATTATTCTCGTGGAAAGAAATTGCTTGTTGGTTATAAGAAGGGATCTGGTATA TTCTGTTCTTGCTGCAATACTGAGGTTAGTCCATCTCAGTTTGAAGCTCATGCAGGTTGG GCATCGCGCAAAAAACCTTATGGGTATATTTACACGTCTAATGGAGTTTCGCTACATGAA TTTGCTATATCTCTATTAAAAGGCCGCAAGTCTTCAGTTAAAGACAGTGATGACTTGTGC ATCATATGCGCAGATGGTGGTAAACTAGTGCTTTGTGATGGATGTCCTAGGGCTTTCCAT AAAGAGTGTGCATCATTATCAACTATCCCTCGTGGTAAATGGTACTGCAAGTATTGTGAA AGCATGTTACAGAGGGAGAAGTTTGCGGAGCGCAATACGAATGCCTTAGCAGCCGGCAGG ATCTCCGGCATTGATCCTATTGAGCAAATAACAAACCGTTGCATTCGTTTTGTCAAGAAT GCAGAAGAGGCAGAATTTATTGCATGTGTTTTATGCAGAGCTTATGACTTTAGCAAGTCT GGTTTTGGTCCACGGACTGTCATTCTTTGTGACCAGTGCGAGAAAGAGTATCATGTTGGC TGCTTGAAGAAAAGCAAGATAGCAGATTTAAAGGAATTGCCTAAAGGAAAATGGTTCTGT AGTGTGGATTGCAAGAGGATCTATTGTGCCCTGCAAAATTTGCTTAACTCAGGAGAAGAG AGGTTGCCTGATTCTTGTTTGGATGCAGGAAGAGTTAAGGAAAAACATAACAGTTTGGTT GCTGTTGGTGAACTTGATGTTAGATGGAGGCTTCTTAGTGGCAGAATTTCCTCCCGTGAA ACCAGAAGGCTACTGGCAGAAGCTGTTTCTATCTTCCATGATGGTTTCGATCCTATTGTT GATTCAGTAACTGGACGTGACTTCATTCCTTCTATGGTTTATGGAAGGAATATTAGGGGC CAAGACTTTGGGGGCATGTATTGCGCTATATTGACTGTAAACTCAACAGTAATATCAGCA GGGATCCTCCGGATTTTTGGCCAGGATATGGCAGAACTCCCTCTTGTGGCAACCCGTGTT GGTAGCCAAGGCAAGGGATACTTTCAGTTGCTGTTCTCCTGCATAGAAAAATTGCTTGCA TTTTTGGGCGTGAGACGCTTTGTACTCCCAGCTGCTGTTGAAGCTATGTCGATTTGGACT AAGAAATTTGGATTTGAGGAGTTAACACCAGAGCAGCTTGTCAGCTACAGAAAAACTTGT TGGCAAATGATTAGCTTTAAAGGCACATCTATGCTGGAAAAAATGGTTCCTAAATGTAGA ATCATTAAACAAGGGGAAGGTGAAACTGATGTTCCAGATGAGTAGTTAAATCCCATTTGT AAATCCATTTTTTTCAAATTACATGTATATTTCTCATCTTATTTATCACAAAGGGCAAGT AGTTGTTAGTAGTAACTATTACAAATGAGATGTAGAGGATTATATTTGTGTAAAAAATGT TCTACAACTCGAGCATATCTTGAGTTTGATTTTTTGCTCCTCTCCCCGTGTTTACTCGGA ACTTCGTTTTCTATTTTTCTCCAAAACATCGTATTGAACTTTGAAGCGTGACAACAAGGA TCAGCTTCTTACTTCTCGAGCGACAGTTCCACGATCCCGACCAGCAACTTCTTGGGAGTT AGGGGCATCAAAGCTTGCGGAGAGTGTACGATAACTAAGGTTTTTTTTTCTTTCTTTTTT TGGATTTTATGGGGTTACGACCTGATTGATACTTTCAATATTTCATTATCACAAGCCTTT GAATCAACGTTTATGCTAATCAAACTCCATATTTCTTCCTCAAGA