Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g080550.2.1
CDS Infomation

Protein trichome birefringence (AHRD V3.3 *** TBR_ARATH)
Sequence

ATGGCAGAAACAGCAAAATATGAAGCTATAAATGGTGGAACTCTGTTTACAGACATGAAA
ACTCAGTTTTCTCTTCTCAAAACTAAAAGAACTGTTGGTTTTGCATATGGGTTTTTGTTT
ATTTTCATTGTTGTTACTACTTTCTTAGCTTTTACTCCTTCACAAAACTCTTCATCACCA
TGGTTTTCTAACATTTTTTCTCTAACCAAACAAGAAGATGTTGTTACTACTACTTCTTAT
AGATCTCAGTTTTCTTCTGTTTTCTCTAATCTTTTTCCAAAACCAAGTTTTGAGCAACCC
CATTTGGATAAAAAGGGACTAATTGTTGAAAAAAGTGAAAATTATACTCAAAATGATGAT
AAAGGTGGAGTCTTGGAAAACCCCTTTAATTCTTCTTCTGTTTTGAGTGATAAAGTTGGA
ATCTTGATGGGAAATGAGAGTGTAAATCAGAGTTTTGATGATAAAGATGGGATCTTTAAG
GCAAATCAGAGCTCAACTGAGGGTTCTAAGTCTGTTGCAGCTGTGAATCAGACTAAAAGT
AGAGATTTTGATGATAAAGTTGGAATCTTGAAGGGAAATGAGAGTAAAAAAACAGCACCA
AAGTTGTCTTCCAAGGGAAAAAGTGCAAATGTGGAAAAGAAAAGAGATGTTGATTTGGTT
AAGTCTTTGTTGAATTGTGATTTCTTTGATGGGAATTGGGTGAAAGATGAATCTTACCCT
TTGTATAAACCTGGTTCCTGTTCACTTATTGATGAGCAATTCAATTGTTTTCTTAATGAT
AGGCTTGATAATGGTTACTTGAAGATGAAATGGAAACCCAATGCATGTAGTCTTCCTAGA
TTGAATGCTACTCATATGCTGGAATTGTTAAGAGGAAAGCGTCTTGTTTTCGTTGGCGAT
TCTTTGAATAGGAATATGTGGGAATCCCTTATTTGTATACTTAGAAACTCTGTAAAGAAT
AAGAAAAAGGTTTATGAAGAATCTGGAAGACACCATTTCAGGACAGAAGCTTTCTATTCG
TTTATATTCGAAGAGTATAAATGCAGAGTGGAGTTCTTTGTGTCTCCATTCTTGGTTCAA
CAATGGGAAGTTGCTGATAAAAAAGGAGGTAAGAAAGAAACGCTTCGACTTGATCTGATC
GGAGAGTCTGCTGATAAGTATAAAGATGCGGATGTCTTAGTCTTCAACACCGGCCATTGG
TGGACTCATGAGAAGACTTCGTTAGGGAAGGACTATTATCAAGAAGGAAATCACGTGTAC
AACGAACTAAACGTTCTAGAGGCCTTTCGGAGAGCATTAACAACATGGGGTAGATGGATC
GATGCTCATATCAATCCCAAGAAGACGTTTGTTCTCTTCAGAGGTTATTCTGCTTCTCAT
TTCAGTGGCGGGCAATGGAATTCTGGCGGGGCGTGTGACAGTGAAACAGAACCAATAAAG
AACGACACGTATCTGACTCCGTATCCATCCAAGATGAAGGTACTAGAAGACGTCTTCAAA
GGGATGAAAACTCAAGTCTCGTATCTCAACATCACAAGAATGACGGACTATAGAAAAGAC
GGTCATCCATCAATATATAGGAAACCAAATTTGACGTTAAAAGAGAGGAGATCGCAATGG
AGGTATCAAGATTGTAGCCATTGGTGCCTTCCCGGAGTACCCGATGCTTGGAATGAGCTC
TTATATGCTGAACTTCTGGTAAGACTACACCAAAAACACCAATCGAAAAAGTCATAG

Peptide Sequence

PEP ID

Solyc10g080550.2.1
PEP Infomation

Protein trichome birefringence (AHRD V3.3 *** TBR_ARATH)
Sequence

MAETAKYEAINGGTLFTDMKTQFSLLKTKRTVGFAYGFLFIFIVVTTFLAFTPSQNSSSP
WFSNIFSLTKQEDVVTTTSYRSQFSSVFSNLFPKPSFEQPHLDKKGLIVEKSENYTQNDD
KGGVLENPFNSSSVLSDKVGILMGNESVNQSFDDKDGIFKANQSSTEGSKSVAAVNQTKS
RDFDDKVGILKGNESKKTAPKLSSKGKSANVEKKRDVDLVKSLLNCDFFDGNWVKDESYP
LYKPGSCSLIDEQFNCFLNDRLDNGYLKMKWKPNACSLPRLNATHMLELLRGKRLVFVGD
SLNRNMWESLICILRNSVKNKKKVYEESGRHHFRTEAFYSFIFEEYKCRVEFFVSPFLVQ
QWEVADKKGGKKETLRLDLIGESADKYKDADVLVFNTGHWWTHEKTSLGKDYYQEGNHVY
NELNVLEAFRRALTTWGRWIDAHINPKKTFVLFRGYSASHFSGGQWNSGGACDSETEPIK
NDTYLTPYPSKMKVLEDVFKGMKTQVSYLNITRMTDYRKDGHPSIYRKPNLTLKERRSQW
RYQDCSHWCLPGVPDAWNELLYAELLVRLHQKHQSKKS*

Transcript Sequence

Transcript ID

Solyc10g080550.2.1
Transcript Infomation

Protein trichome birefringence (AHRD V3.3 *** TBR_ARATH)
Sequence

ATTTAATCATTTTTTTTCCGTTACTCACTTATATTATAACTCTCCTCTATTTGTTTCACA
TTATAACACACATTAAAAAGAGCCCAAAAAAAATAAATCTCTCACACTTTTCCTTTATTG
AATTTATTTTGAAAAAAAAGAAAAGAAAAAAGATTGTTTCTTGAATAGAGTTTCAAAGCA
GAACAACAATGGCAGAAACAGCAAAATATGAAGCTATAAATGGTGGAACTCTGTTTACAG
ACATGAAAACTCAGTTTTCTCTTCTCAAAACTAAAAGAACTGTTGGTTTTGCATATGGGT
TTTTGTTTATTTTCATTGTTGTTACTACTTTCTTAGCTTTTACTCCTTCACAAAACTCTT
CATCACCATGGTTTTCTAACATTTTTTCTCTAACCAAACAAGAAGATGTTGTTACTACTA
CTTCTTATAGATCTCAGTTTTCTTCTGTTTTCTCTAATCTTTTTCCAAAACCAAGTTTTG
AGCAACCCCATTTGGATAAAAAGGGACTAATTGTTGAAAAAAGTGAAAATTATACTCAAA
ATGATGATAAAGGTGGAGTCTTGGAAAACCCCTTTAATTCTTCTTCTGTTTTGAGTGATA
AAGTTGGAATCTTGATGGGAAATGAGAGTGTAAATCAGAGTTTTGATGATAAAGATGGGA
TCTTTAAGGCAAATCAGAGCTCAACTGAGGGTTCTAAGTCTGTTGCAGCTGTGAATCAGA
CTAAAAGTAGAGATTTTGATGATAAAGTTGGAATCTTGAAGGGAAATGAGAGTAAAAAAA
CAGCACCAAAGTTGTCTTCCAAGGGAAAAAGTGCAAATGTGGAAAAGAAAAGAGATGTTG
ATTTGGTTAAGTCTTTGTTGAATTGTGATTTCTTTGATGGGAATTGGGTGAAAGATGAAT
CTTACCCTTTGTATAAACCTGGTTCCTGTTCACTTATTGATGAGCAATTCAATTGTTTTC
TTAATGATAGGCTTGATAATGGTTACTTGAAGATGAAATGGAAACCCAATGCATGTAGTC
TTCCTAGATTGAATGCTACTCATATGCTGGAATTGTTAAGAGGAAAGCGTCTTGTTTTCG
TTGGCGATTCTTTGAATAGGAATATGTGGGAATCCCTTATTTGTATACTTAGAAACTCTG
TAAAGAATAAGAAAAAGGTTTATGAAGAATCTGGAAGACACCATTTCAGGACAGAAGCTT
TCTATTCGTTTATATTCGAAGAGTATAAATGCAGAGTGGAGTTCTTTGTGTCTCCATTCT
TGGTTCAACAATGGGAAGTTGCTGATAAAAAAGGAGGTAAGAAAGAAACGCTTCGACTTG
ATCTGATCGGAGAGTCTGCTGATAAGTATAAAGATGCGGATGTCTTAGTCTTCAACACCG
GCCATTGGTGGACTCATGAGAAGACTTCGTTAGGGAAGGACTATTATCAAGAAGGAAATC
ACGTGTACAACGAACTAAACGTTCTAGAGGCCTTTCGGAGAGCATTAACAACATGGGGTA
GATGGATCGATGCTCATATCAATCCCAAGAAGACGTTTGTTCTCTTCAGAGGTTATTCTG
CTTCTCATTTCAGTGGCGGGCAATGGAATTCTGGCGGGGCGTGTGACAGTGAAACAGAAC
CAATAAAGAACGACACGTATCTGACTCCGTATCCATCCAAGATGAAGGTACTAGAAGACG
TCTTCAAAGGGATGAAAACTCAAGTCTCGTATCTCAACATCACAAGAATGACGGACTATA
GAAAAGACGGTCATCCATCAATATATAGGAAACCAAATTTGACGTTAAAAGAGAGGAGAT
CGCAATGGAGGTATCAAGATTGTAGCCATTGGTGCCTTCCCGGAGTACCCGATGCTTGGA
ATGAGCTCTTATATGCTGAACTTCTGGTAAGACTACACCAAAAACACCAATCGAAAAAGT
CATAGGTAAAAACAAACA