Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g080440.2.1
CDS Infomation

Tubulin binding cofactor C domain-containing protein (AHRD V3.3 *** AT3G57890.1)
Sequence

ATGCCGGAATCCGACGAACAACCACCGCCATCGACGCCGTCAACGGCGTCCACCTCACCT
GTTTACATACATCCGCGAAGAGAACCTTTCGAACACGGACTTCTCCCTATCCCTAAACTT
ATCTTCACCGACGGAGCCCAAACTCTTACTCAAATTCGTGATAAACTCTTGTCCTTATCA
TCTGGATCGACACATCGAGTTAATTTTGAAGCAATTGCTGAAGCACTTCAGATCTCCCAT
GACCATGCTCGTCTCGTCATTGAGACAATCGCATCGGTTCTTCATTCCGATTCTGATCCC
AGCGTCACTGCTAAGCCGTCAGAGATCGGTTCCGTTGGTGTAAACGTGTTTGATTTGATG
ATGTTTTTGTACATTCAGAGTTATAAAAGGTTGCTACCTAAAGGACATAAGGATTCTGCT
GCAGTTGCTGATGTTTGGCCTTCTACTTCTGCATTCGATGGTTTCTTGTCGGCTCTTTCA
CCGTTGCAGCTTGTGCGCAGCAATAGTCGTCGGTCCATGCCATCACAGGCTGATGAAGAG
GCTCATCAATTATCCTATTTACAGAAACACTTGGGAAACATTCTGTCTCTTTTGGCAGAG
TCAGGGGAAGGAGATGGTGACGAATCACTGGTCTTGTCTATGGAGAAATTGGAGCATCTT
GGCTTCCTAATCTATTTTGGTGAAAAGGGATCTGAGAGAATCCCATTGAGTCAGAATGCC
CCATTTTTTGCCAATTCAGATCCAGAGATGCCTGCTGTTCCTGTTCCTGCAGCTCAAGTA
CATGACTGGCTTATAGAAAATATAGCCTCTGCTTTGACACGAATAACCGAGAGGGCTTCA
GCAAAGGAAAATGGACCAACTAGTGCCTCTGATCAGGATGTGCCAATGGCTGATGTCTCT
GCAAGTTCAGTTAAGAGTTCACCAGGTCCTAGAGGTCCAAGTTCCATTGAAGGAATTTCT
AAATCATCATATGTAAGGCTGCCAAATGATATTAAAGGCTCCTCTGTAAAGGTTATCAAT
TGCCATGAATCGGTCATTTATATTTTAGCTCCTTTGAAATATGCTACAGTATATGGATGC
TCTGATGCAACTATTGTCCTGGGAGCTGTAGGCAAGGCTGTCAGAATTGAGCACTGCGAG
CGTGTACAAGTGATTGCAGCAGCAAAACGTATTTGTATTGCCAATTGTCGTGAATGCGTA
TTCTTCTTGGGAGTTAACCAAACACCACTTCTTGTTGGTGATAACCATAAATTGCAAGTG
GCTCCGTACAATACTTTTTACTCGCTATTGGAGGAACACCTGAAGCAAGTTGGTATTGAC
CCAACCATCAACAGATGGGATGCACCTGTAGCACTTGGCGTCATTGACCCACACGATTCA
CTGTCACATCCTGCTGGTGTGTCTGAAGTTCAAACAGAGTCTGCTAGTCCCGTGGACCCT
GATCAGTTCACTAACTTTTTGATTCCAAACTGGTTTGAAGGGCAGCAATCTGGGTCCACA
AAAGATAATCCATTCCCCTTACCGGAAGCTTATATGGCATCCCAGCAGAGAAATCTCAAG
AACTTGGAGGAGACTAAGAGTAGTTTGAAGGACATCGACCTTGATGAGAGCCGGAAGCGG
GAAGTAGCAGCTGCTCTGCATGTGTGCTTTAAAGACTGGTTATATGCTTCAGGAAATATA
CGTCAACTATACTGTCTTCAAGGCGAATAG

Peptide Sequence

PEP ID

Solyc10g080440.2.1
PEP Infomation

Tubulin binding cofactor C domain-containing protein (AHRD V3.3 *** AT3G57890.1)
Sequence

MPESDEQPPPSTPSTASTSPVYIHPRREPFEHGLLPIPKLIFTDGAQTLTQIRDKLLSLS
SGSTHRVNFEAIAEALQISHDHARLVIETIASVLHSDSDPSVTAKPSEIGSVGVNVFDLM
MFLYIQSYKRLLPKGHKDSAAVADVWPSTSAFDGFLSALSPLQLVRSNSRRSMPSQADEE
AHQLSYLQKHLGNILSLLAESGEGDGDESLVLSMEKLEHLGFLIYFGEKGSERIPLSQNA
PFFANSDPEMPAVPVPAAQVHDWLIENIASALTRITERASAKENGPTSASDQDVPMADVS
ASSVKSSPGPRGPSSIEGISKSSYVRLPNDIKGSSVKVINCHESVIYILAPLKYATVYGC
SDATIVLGAVGKAVRIEHCERVQVIAAAKRICIANCRECVFFLGVNQTPLLVGDNHKLQV
APYNTFYSLLEEHLKQVGIDPTINRWDAPVALGVIDPHDSLSHPAGVSEVQTESASPVDP
DQFTNFLIPNWFEGQQSGSTKDNPFPLPEAYMASQQRNLKNLEETKSSLKDIDLDESRKR
EVAAALHVCFKDWLYASGNIRQLYCLQGE*

Transcript Sequence

Transcript ID

Solyc10g080440.2.1
Transcript Infomation

Tubulin binding cofactor C domain-containing protein (AHRD V3.3 *** AT3G57890.1)
Sequence

CCGGGTCAGGCTGGATCTGGCCCGTAAGTGAACTCGAACCGGGTAAATTATTCCTCTTTC
ACTGACATTTGATCTCTCCCATTTTTTCAACCTCATTTCCCGTCAATTCACTCACAAAGC
CATGCCGGAATCCGACGAACAACCACCGCCATCGACGCCGTCAACGGCGTCCACCTCACC
TGTTTACATACATCCGCGAAGAGAACCTTTCGAACACGGACTTCTCCCTATCCCTAAACT
TATCTTCACCGACGGAGCCCAAACTCTTACTCAAATTCGTGATAAACTCTTGTCCTTATC
ATCTGGATCGACACATCGAGTTAATTTTGAAGCAATTGCTGAAGCACTTCAGATCTCCCA
TGACCATGCTCGTCTCGTCATTGAGACAATCGCATCGGTTCTTCATTCCGATTCTGATCC
CAGCGTCACTGCTAAGCCGTCAGAGATCGGTTCCGTTGGTGTAAACGTGTTTGATTTGAT
GATGTTTTTGTACATTCAGAGTTATAAAAGGTTGCTACCTAAAGGACATAAGGATTCTGC
TGCAGTTGCTGATGTTTGGCCTTCTACTTCTGCATTCGATGGTTTCTTGTCGGCTCTTTC
ACCGTTGCAGCTTGTGCGCAGCAATAGTCGTCGGTCCATGCCATCACAGGCTGATGAAGA
GGCTCATCAATTATCCTATTTACAGAAACACTTGGGAAACATTCTGTCTCTTTTGGCAGA
GTCAGGGGAAGGAGATGGTGACGAATCACTGGTCTTGTCTATGGAGAAATTGGAGCATCT
TGGCTTCCTAATCTATTTTGGTGAAAAGGGATCTGAGAGAATCCCATTGAGTCAGAATGC
CCCATTTTTTGCCAATTCAGATCCAGAGATGCCTGCTGTTCCTGTTCCTGCAGCTCAAGT
ACATGACTGGCTTATAGAAAATATAGCCTCTGCTTTGACACGAATAACCGAGAGGGCTTC
AGCAAAGGAAAATGGACCAACTAGTGCCTCTGATCAGGATGTGCCAATGGCTGATGTCTC
TGCAAGTTCAGTTAAGAGTTCACCAGGTCCTAGAGGTCCAAGTTCCATTGAAGGAATTTC
TAAATCATCATATGTAAGGCTGCCAAATGATATTAAAGGCTCCTCTGTAAAGGTTATCAA
TTGCCATGAATCGGTCATTTATATTTTAGCTCCTTTGAAATATGCTACAGTATATGGATG
CTCTGATGCAACTATTGTCCTGGGAGCTGTAGGCAAGGCTGTCAGAATTGAGCACTGCGA
GCGTGTACAAGTGATTGCAGCAGCAAAACGTATTTGTATTGCCAATTGTCGTGAATGCGT
ATTCTTCTTGGGAGTTAACCAAACACCACTTCTTGTTGGTGATAACCATAAATTGCAAGT
GGCTCCGTACAATACTTTTTACTCGCTATTGGAGGAACACCTGAAGCAAGTTGGTATTGA
CCCAACCATCAACAGATGGGATGCACCTGTAGCACTTGGCGTCATTGACCCACACGATTC
ACTGTCACATCCTGCTGGTGTGTCTGAAGTTCAAACAGAGTCTGCTAGTCCCGTGGACCC
TGATCAGTTCACTAACTTTTTGATTCCAAACTGGTTTGAAGGGCAGCAATCTGGGTCCAC
AAAAGATAATCCATTCCCCTTACCGGAAGCTTATATGGCATCCCAGCAGAGAAATCTCAA
GAACTTGGAGGAGACTAAGAGTAGTTTGAAGGACATCGACCTTGATGAGAGCCGGAAGCG
GGAAGTAGCAGCTGCTCTGCATGTGTGCTTTAAAGACTGGTTATATGCTTCAGGAAATAT
ACGTCAACTATACTGTCTTCAAGGCGAATAGTGTTCTGCACGATGTTTCAGCAAATGTAG
TAAGGATGGTGTTGGTAATTCTCCCCTTCCGTTGTGGATTTCAGTTTCATCCCCCCACAG
GTTCCTCCCTGCCATTTTTGTTGGTCTTGATAGCAGCCGAGAGTTTGATGGTATCGTAAT
ATTTTGCCATGCAGCTTACAGACACGTTACCGTCTAGAACTCTTGTGCAATTTATAACCA
GAATGTCTCATGACTTGAAACCGTGTTACTTTTTTTTCGAAATTGAACTGTCTTGTACTA
ATATGGAAGTCGAAATATTTACAGTTTCCAGTTTCCCCTTTTTTTTCGTTTGTCTTGCTA
GGTTTCGAACTTTAGTTGACGATTAATCTGTTGTTATTTGCTTCGTCTGGGTTCCTGTAT
ACAAATAAGAGATGCAGAATACCATGCTGGGTAAATTAGTGAACAGTGTTTCATAGAATT
GTTGATTGGTTTTTGCCTAGCAGCTAAACACTCTTCGACACTGGCGCTGCTGCAATTCGG
TTCGAACCCGGTGGTAGCTTTGACTTAAATTTTGTATTCGTGATCTCATGTTAGAATTCG
AAACTCATAAATCAAAATTCTAGCTCTGTTTTTGTTAAA