Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g078530.2.1
CDS Infomation

Patatin (AHRD V3.3 *** M1C6Q0_SOLTU)
Sequence

ATGGCAGCTAATTCAGTTAATACAATCTCAATGCTTGATTCCAACATGGAAGTTGATAAG
CTCACAAACGAAATTTTCTCAATTCTTGAAAACAAATTCCTCTTTGGTTACGATGACCCA
AAAAAATCTGTCACCGGAAACGAAGAAAATTTGTCAGCTCGGTTCGCCGGGAACAAAAAT
GTCGGCGCCGGAAAAGTCAGAATTTTGTCAATTGATGCTGGTGGGTCTACTGATGGTGTC
CTTGCAGCAAAATCTTTAACCCATTTGGAATCAACCCTTCGCCGGAAATCTGGAAAATCC
GATGCTCATATTGCTGACTTCTTCGATGTCGTCGCCGGCTCCGGCACCGGCGGTGTTCTC
GCCGGTCTTCTTTTCACACGTGGGGCTGATGGGGTTCCTATGTTTACAACTGACGAAGCT
CTGAGATTCATCGTCGAAAACGGTGAGAAAATTTCCCGGAGTTCCAAAACTGGATTTTTC
CGGCAGGTTTCCCGGCCGGCGAAGGTGTTCAAGAAAGTGTTCGGAGATTTAACGTTAAAA
GATACGATGAAAGCGGTTTTGATCCCCTGCTACGACCTCAAAACAGGTGCACCGTTTGTT
TTTTCCCGCGCTGATGCGTGGGAAATGGACGGCTGCGATTTCGCCATGTCGGATGTATGT
GGGGCCACGATGGCTGATCGTGCGGTTGATTTGAAGTCAATTGATGGTCGTTCGAAGATC
ACAGCCGTAGGTGGTGGAATAGCGATGACTAATCCAACGGCTGCCGCGATTACACATGTC
CTTAATAACAAACAAGAGTTTCCATTTGCTAATGGAGTTGAAGATTTATTGGTTGTTTCA
TTGGGTAATGGAGATTCCGATTCCGGCACCGGAAATGTCATGTCATCACCGGCGGCGTTT
GTTAAGATTGCCGGAGATGGAACCGCCGATATGGTAGATCAAGCTGTATCAATGGCATTT
GGACAAACAAGGAACAATAACTATGTAAGAATTCAAGGAAATGGTATTGTTGGGAAAAAA
TACCAATTAATTAAAGATGAAAATATGAACAAATGTGAAAAAATGAAAAAAATGGTGGTA
ATTGCTGAGGAAATGTTAGGGCAAAAAAATGTTGAATGTGTATTATTTCAAGGAAAGAAA
TTGGTTGAAAATTCAAATTTGGACAAATTAAAGACGATAGCAAGTGAACTGATCAAAGAA
CAAGAAAGGAGAAAAACTAGCATTTTGCCCCCTGTGGTTTTGAAACATGCATCACCATCC
CCTAGAACATCGTCCGTGACAACCTTGTCCTCCGATTCATCGTGTTAA

Peptide Sequence

PEP ID

Solyc10g078530.2.1
PEP Infomation

Patatin (AHRD V3.3 *** M1C6Q0_SOLTU)
Sequence

MAANSVNTISMLDSNMEVDKLTNEIFSILENKFLFGYDDPKKSVTGNEENLSARFAGNKN
VGAGKVRILSIDAGGSTDGVLAAKSLTHLESTLRRKSGKSDAHIADFFDVVAGSGTGGVL
AGLLFTRGADGVPMFTTDEALRFIVENGEKISRSSKTGFFRQVSRPAKVFKKVFGDLTLK
DTMKAVLIPCYDLKTGAPFVFSRADAWEMDGCDFAMSDVCGATMADRAVDLKSIDGRSKI
TAVGGGIAMTNPTAAAITHVLNNKQEFPFANGVEDLLVVSLGNGDSDSGTGNVMSSPAAF
VKIAGDGTADMVDQAVSMAFGQTRNNNYVRIQGNGIVGKKYQLIKDENMNKCEKMKKMVV
IAEEMLGQKNVECVLFQGKKLVENSNLDKLKTIASELIKEQERRKTSILPPVVLKHASPS
PRTSSVTTLSSDSSC*

Transcript Sequence

Transcript ID

Solyc10g078530.2.1
Transcript Infomation

Patatin (AHRD V3.3 *** M1C6Q0_SOLTU)
Sequence

ATTCTTCTCTTCCCAATTAACTCTCTGTTCATAACAATCTCTCCAAATTTACGAAAAGAT
TCATTTTTTAGCTTAAAGAAACAATTTTTATAACACCCAAAATCAAGAAATGGCAGCTAA
TTCAGTTAATACAATCTCAATGCTTGATTCCAACATGGAAGTTGATAAGCTCACAAACGA
AATTTTCTCAATTCTTGAAAACAAATTCCTCTTTGGTTACGATGACCCAAAAAAATCTGT
CACCGGAAACGAAGAAAATTTGTCAGCTCGGTTCGCCGGGAACAAAAATGTCGGCGCCGG
AAAAGTCAGAATTTTGTCAATTGATGCTGGTGGGTCTACTGATGGTGTCCTTGCAGCAAA
ATCTTTAACCCATTTGGAATCAACCCTTCGCCGGAAATCTGGAAAATCCGATGCTCATAT
TGCTGACTTCTTCGATGTCGTCGCCGGCTCCGGCACCGGCGGTGTTCTCGCCGGTCTTCT
TTTCACACGTGGGGCTGATGGGGTTCCTATGTTTACAACTGACGAAGCTCTGAGATTCAT
CGTCGAAAACGGTGAGAAAATTTCCCGGAGTTCCAAAACTGGATTTTTCCGGCAGGTTTC
CCGGCCGGCGAAGGTGTTCAAGAAAGTGTTCGGAGATTTAACGTTAAAAGATACGATGAA
AGCGGTTTTGATCCCCTGCTACGACCTCAAAACAGGTGCACCGTTTGTTTTTTCCCGCGC
TGATGCGTGGGAAATGGACGGCTGCGATTTCGCCATGTCGGATGTATGTGGGGCCACGAT
GGCTGATCGTGCGGTTGATTTGAAGTCAATTGATGGTCGTTCGAAGATCACAGCCGTAGG
TGGTGGAATAGCGATGACTAATCCAACGGCTGCCGCGATTACACATGTCCTTAATAACAA
ACAAGAGTTTCCATTTGCTAATGGAGTTGAAGATTTATTGGTTGTTTCATTGGGTAATGG
AGATTCCGATTCCGGCACCGGAAATGTCATGTCATCACCGGCGGCGTTTGTTAAGATTGC
CGGAGATGGAACCGCCGATATGGTAGATCAAGCTGTATCAATGGCATTTGGACAAACAAG
GAACAATAACTATGTAAGAATTCAAGGAAATGGTATTGTTGGGAAAAAATACCAATTAAT
TAAAGATGAAAATATGAACAAATGTGAAAAAATGAAAAAAATGGTGGTAATTGCTGAGGA
AATGTTAGGGCAAAAAAATGTTGAATGTGTATTATTTCAAGGAAAGAAATTGGTTGAAAA
TTCAAATTTGGACAAATTAAAGACGATAGCAAGTGAACTGATCAAAGAACAAGAAAGGAG
AAAAACTAGCATTTTGCCCCCTGTGGTTTTGAAACATGCATCACCATCCCCTAGAACATC
GTCCGTGACAACCTTGTCCTCCGATTCATCGTGTTAAATCCTAAAGTATTTGATGAAATA
GTTAAGGTGTGAGCATACTAGTCTGAAAAAAAAAAAGAAGGACTAGTGATTAATAGAGTA
GGGAAATGTGAGTCTGAGTTTAGTTGAATCGAGTTTGGGTTGAGATAAATTAGACTTGAA
ATATGGGCGTGAAGCCACTCGTGATGAACTCAAACGTAACGTTTACTAGTTCGATCGAGC
TGAGCTGCTAAAATAGCCCAACATTTTTTTTTCCCATCCTTTTTTATTTTTGATTCATGG
GTTGGTTTGTAGTTGAAATGTATATTTAGGAACGAATCTTGATGATGAATGTTTATATGT
ATATGATTCTAGTAATATGAATGGATTGCTCATTTCGAGAAATGAGAAAGATTTGTGAAA
CTAAAAGACTTTTTGTTTTTTTCGATTTAACGATTTAAGATTCAAAACTTTTTACTTGAT
TGATTCAGATTTATTTATGTAAAGTTCGATCTAATTAAATAAATAAATAA