Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g054040.2.1
CDS Infomation

26S protease regulatory subunit (AHRD V3.3 *** A0A0K9PSD5_ZOSMR)
Sequence

ATGACGAGCGAGTCGGAAAATGTCCTCCGCCGCCGTACTGCATATGATGAATTCCGGAAA
AAGCAACTCGAGCAGAAGGAGCTAGATGCTCAGCTATGGGCAGTGAAAGAAAATTTGCGT
GCAGCCAAAAAGGAATATGGTAAAACAGAAGATGATTTGAAGTTGCTTCAGAGCGTTGGG
CAGATCATAGGCGAAGTGCTCCGGCCTCTAGATGACAAACGCAAGAAGAAGTCTACTTCT
AGAAGTAACATTGTGGTTTTGTGCTGCAAAGATGGAAGTGAGCTAGTGACAAATGGTGCT
GTTTATAGTAAAATGGATAAGGAAAATCTAACTTCTGGCACTAGAGTGGTTCTCGATATG
TCGACTCTTACAATCATGAGGGCTCTCCCACATGAAGTTCATCCTATGGTGCATAATATG
CTTCATGAAGATCCTGGCAATATAAGCTACTCTGCTGTGGGTGGACTGTCAGATCAGATC
AGAGAGCTGAGAGAATCAATAGAACTACCTCTGATGAACCCTGAACTTTTCCTCCGTGTT
GGAATTAAGCCTCCAAAGGGTGTTCTTCTCTATGGGCCTCCTGGGACTGGCAAGACCTTG
TTAGCCAGGGCAATTGCCCGCAACGTTGATGCCAATTTCTTAAAGATAGTATCAAGTGCC
ATTATTGATAAATACATAGGTGAGAGTGCGAGATTGATACGGGAAATGTTTAACTATGCT
CGTGATCACCAACCTTGCATCATTTTCATGGATGAGATTGATGCAATTGGTGGACGTCGA
TTTAGCGAGGGAACAAGTGCAGATCGTGAAATTCAGAGAACGCTCATGGAGTTGCTTAAT
CAGTTGGATGGATTTGACCATATTGGAAAGGTAAAAGTGATTATGGCAACAAACAGGCCA
GATGTTTTGGACCCAGCTCTTCTTCGCCCTGGTCGTTTAGATAGAAAAATAGAAATACCG
TTGCCTAATGAACTATCAAGAATTGAGATCCTCAAGATTCATGCTGCTGGAATTGCCAAA
CATGGTGACATTGATTATGAAGCTGTTGTTAAGCTTGCTGAGGGTTTTAATGGAGCTGAT
CTTCGAAATGTGTGCACTGAAGCTGGTATATCAGCAGTACGTGCAGAGCGTGATTATGTC
ATCCATGTGGATTTCATGAAGGCTGTAAGGAAACTGAATGAAGCGAAGAAACTTGAATCA
AGTGTGCACTATGCTGCCGATATTGGCAAGGAGTGA

Peptide Sequence

PEP ID

Solyc10g054040.2.1
PEP Infomation

26S protease regulatory subunit (AHRD V3.3 *** A0A0K9PSD5_ZOSMR)
Sequence

MTSESENVLRRRTAYDEFRKKQLEQKELDAQLWAVKENLRAAKKEYGKTEDDLKLLQSVG
QIIGEVLRPLDDKRKKKSTSRSNIVVLCCKDGSELVTNGAVYSKMDKENLTSGTRVVLDM
STLTIMRALPHEVHPMVHNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFLRV
GIKPPKGVLLYGPPGTGKTLLARAIARNVDANFLKIVSSAIIDKYIGESARLIREMFNYA
RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDHIGKVKVIMATNRP
DVLDPALLRPGRLDRKIEIPLPNELSRIEILKIHAAGIAKHGDIDYEAVVKLAEGFNGAD
LRNVCTEAGISAVRAERDYVIHVDFMKAVRKLNEAKKLESSVHYAADIGKE*

Transcript Sequence

Transcript ID

Solyc10g054040.2.1
Transcript Infomation

26S protease regulatory subunit (AHRD V3.3 *** A0A0K9PSD5_ZOSMR)
Sequence

ATCCTTGGGCTTTGAGCAAAGTCACAATTTAGCTTAAGCCCACTCAATTGCTACCTCCAC
TTTTTTCATTTTGTAGAAAGAAAAGAGTAGAAGATCACACTATTTCTGTTTCGTTTTCTG
CAAGTCATTTGAATTTAGATAGGTGATTGAGAATATTCCGATGACGAGCGAGTCGGAAAA
TGTCCTCCGCCGCCGTACTGCATATGATGAATTCCGGAAAAAGCAACTCGAGCAGAAGGA
GCTAGATGCTCAGCTATGGGCAGTGAAAGAAAATTTGCGTGCAGCCAAAAAGGAATATGG
TAAAACAGAAGATGATTTGAAGTTGCTTCAGAGCGTTGGGCAGATCATAGGCGAAGTGCT
CCGGCCTCTAGATGACAAACGCAAGAAGAAGTCTACTTCTAGAAGTAACATTGTGGTTTT
GTGCTGCAAAGATGGAAGTGAGCTAGTGACAAATGGTGCTGTTTATAGTAAAATGGATAA
GGAAAATCTAACTTCTGGCACTAGAGTGGTTCTCGATATGTCGACTCTTACAATCATGAG
GGCTCTCCCACATGAAGTTCATCCTATGGTGCATAATATGCTTCATGAAGATCCTGGCAA
TATAAGCTACTCTGCTGTGGGTGGACTGTCAGATCAGATCAGAGAGCTGAGAGAATCAAT
AGAACTACCTCTGATGAACCCTGAACTTTTCCTCCGTGTTGGAATTAAGCCTCCAAAGGG
TGTTCTTCTCTATGGGCCTCCTGGGACTGGCAAGACCTTGTTAGCCAGGGCAATTGCCCG
CAACGTTGATGCCAATTTCTTAAAGATAGTATCAAGTGCCATTATTGATAAATACATAGG
TGAGAGTGCGAGATTGATACGGGAAATGTTTAACTATGCTCGTGATCACCAACCTTGCAT
CATTTTCATGGATGAGATTGATGCAATTGGTGGACGTCGATTTAGCGAGGGAACAAGTGC
AGATCGTGAAATTCAGAGAACGCTCATGGAGTTGCTTAATCAGTTGGATGGATTTGACCA
TATTGGAAAGGTAAAAGTGATTATGGCAACAAACAGGCCAGATGTTTTGGACCCAGCTCT
TCTTCGCCCTGGTCGTTTAGATAGAAAAATAGAAATACCGTTGCCTAATGAACTATCAAG
AATTGAGATCCTCAAGATTCATGCTGCTGGAATTGCCAAACATGGTGACATTGATTATGA
AGCTGTTGTTAAGCTTGCTGAGGGTTTTAATGGAGCTGATCTTCGAAATGTGTGCACTGA
AGCTGGTATATCAGCAGTACGTGCAGAGCGTGATTATGTCATCCATGTGGATTTCATGAA
GGCTGTAAGGAAACTGAATGAAGCGAAGAAACTTGAATCAAGTGTGCACTATGCTGCCGA
TATTGGCAAGGAGTGAGGGATTTTTGTCATTTGTGTGATACGACCAACCCCATAGGACTA
TTGGAGTGTTCCAATATCTTAGTCTTTGCAATTGTAGTTACATATACTTGTATTGCCCAT
ATTCAGGAATTATGTAAAAAGCATTAGCATTAGGCACATTTGTTTTCCACTTATAGTTTG
CGATGGATATGGTATTGGACGGAATATATGATATGATGCAGTTTGTGCGATTGAATTCTG
AAATCATGTTAGATATTTGATATAGTTCAGCTTCATTTTCACATAGCAAATGTGCGAGGA
GAAAATTTACTACATGTAATTTTATAAGTTGAGTTTGAAACTTTTGATTTAAATAAAGCA
TATCAATTCAATAGCAAAGAAGTCATGTATTAACATTAAAAAAATAAAATCATTTGTTAC
GACTCTAACTAGAGTGATTTCCATTTTAGCTCAAATTGAAGTGACCACTTACATATTACA
AGTA