Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g050540.2.1
CDS Infomation

Cleavage stimulation factor subunit 3 (AHRD V3.3 *** W9R731_9ROSA)
Sequence

ATGACGGACAAGTACAATGTTGAAGCTGCAGAAATTCTTGCGAATGAGGCACTGCGCTCG
CCAATTTCGGGAGCAGTGCCTATATATGAGCAGCTTCTATCGACGTTTCCCACAGCGGCA
AAATACTGGAAGCAATATGTTGAGGCACACATGGCGGTAAATAATGATGATGCGACAAAA
CAAATATTTAGTCGCTGCCTGTTAAACTGTCTACAGATTCCACTTTGGCGCTGTTACATC
CGCTTTATCAGGAAAGTCAACGACAAGAGGGGGAATGAGGGTCAAGAAGAGACGAGAAAA
GCTTTTGATTTCATGCTTAACTATGTTGGAGCGGACATAGCATCAGGTCCGGTGTGGATG
GAGTACATTGCATTTTTAAGGTCTTTGCCTGCTCCGACCGCACAAGAAGAATCACAACGA
ATGACCTCTGTGAGGAAAATATACCAGAGAGCTATTGTCACCCCAACCCATCATGTGGAA
CAGCTTTGGAGGGACTATGAGAATTTTGAAAATTCAATTAGTCGAGCCTTGGCAAAAGGA
CTGGTTTCTGAGTATCAACCTAAATATAACAGTGCGAGGGCTGTATATAGAGAAAGGAAG
AAGTACACTGATGAAATTGATTGGAATATGCTAGCGATTCCGCCCTCTGGATCTTCCAAG
GAGGAAATGCAATGGATGGCATGGAAAAAACTTCTAGCCTTTGAAAAGGCAAACCCACAG
AGGATAGACAGTGCTTCTGCTAATAAAAGAATTGTGTTCACATATGAGCAGTGCCTCATG
TTCTTGTATCATTATCCTGATATATGGTATGAATATGCCACATGGCATGCAAAAGCTGGT
TCAGTAGACTCCGCTATCAAGGTTTTCCAGCGAGCTTTGAAAGCACTTCCTGACTCGGAG
ATGCTGAGATATGCTTATGCTGAACTTGAGGAATCACGTGGAGCCATTCAGGCTGCTAAA
AAGGTATATGAAAGTCTTTTTGGGGATGGATCCAATGCCTCTGCACTATCACATATCCAG
TTTATAAGGTTTTTAAGAAGAAGTGAAGGAGTTGAAGCAGCTCGCAAATACTTTGTTGAT
GCACGCAAGTCCCCAAATTGCACTTACCATGTTTATGTAGCTTATGCAATGATGGCCTTT
TGTCTAGACAAGGATGCAAAGATGGCGCACAATGTTTTTGAAGCAGGGTTAAAACGTTTT
ATGCATGAGCCTGGATACATCCTTGAGTATGCAGATTTTCTTTATCGTTTGAATGACGAT
AGAAATATCAGGGCATTATTTGAACGTGCATTGAGCTCACTGCCGCCAGAGGAATCTGTT
GAGGTTTGGAAAAAGTTCACTCAATTTGAGCAAACATATGGAGACCTTGCCAGCATGTTG
AAGGTTGAGCAGAGAAGGAAAGAAGCTCTTTCTAGAACAGGTGATGATGGAGCATCAGAG
TTAGAGAGTTCGTTGCATGATGTTGTATCACGCTACAGTTTCATGGATCTTTGGCCTTGC
TCTTCAAACGACTTGGATCATTTAGCACGCCAAGAGTGGCTCGCGAGGAACATCAATAAA
AAACCTGACAAACCTACTCTTGGTATTGAGGCAGGTTCTGCAGACAAGACTACTTCTGGT
GTTTCATCCAATACAAATCCGCCTGCTAAGGTTGTGTATCCAGATACTTCAAAAATGACG
GTTTACGACCCGAGGCAAATTCCAGGTCCTGCTGCGCTTGCAGCTCCATCTGCTTCAGGC
ACCTTGCCCTATTCTGGTCCATTTAGCAGCAATGGACCTCCAATTGCCCTTAATGATATT
TTGAAATCCTTGCCCCCTGCATTTGCAGCGTTCGTAGCAAATTTGCCAGCTGTTGAAGGT
CCTTCTCCTGATGCTGATTTTGTGATATCTGTATGTTTGCAAAGCAACATCCCTGCAGCA
ACTGGAAAATCCGGGACTGCCTCTCTGCCATTGCTGTCAGGCGCTGCTCCATCTACGAGT
GACCTCTCTGATTCAAGCAAATTCAGGCCGAGAGACAGACAGCCTGGAAAGAGGAAAGAC
ATGGACAGACCAGAGGATGATGAATCAACGACTATGCAAAGCCAGCCCCTTCCTAGAGAT
CTTTTCAAGATTCGCCAATTACAAAAAAACCGTGTTGGTAATTCGTCTCGAGTTACTAGT
TCATACACAGGATCAGCATCATACGGAAGTGCGCTTTCAGGAGATCTCTCGGGCAGCACT
AGTTGA

Peptide Sequence

PEP ID

Solyc10g050540.2.1
PEP Infomation

Cleavage stimulation factor subunit 3 (AHRD V3.3 *** W9R731_9ROSA)
Sequence

MTDKYNVEAAEILANEALRSPISGAVPIYEQLLSTFPTAAKYWKQYVEAHMAVNNDDATK
QIFSRCLLNCLQIPLWRCYIRFIRKVNDKRGNEGQEETRKAFDFMLNYVGADIASGPVWM
EYIAFLRSLPAPTAQEESQRMTSVRKIYQRAIVTPTHHVEQLWRDYENFENSISRALAKG
LVSEYQPKYNSARAVYRERKKYTDEIDWNMLAIPPSGSSKEEMQWMAWKKLLAFEKANPQ
RIDSASANKRIVFTYEQCLMFLYHYPDIWYEYATWHAKAGSVDSAIKVFQRALKALPDSE
MLRYAYAELEESRGAIQAAKKVYESLFGDGSNASALSHIQFIRFLRRSEGVEAARKYFVD
ARKSPNCTYHVYVAYAMMAFCLDKDAKMAHNVFEAGLKRFMHEPGYILEYADFLYRLNDD
RNIRALFERALSSLPPEESVEVWKKFTQFEQTYGDLASMLKVEQRRKEALSRTGDDGASE
LESSLHDVVSRYSFMDLWPCSSNDLDHLARQEWLARNINKKPDKPTLGIEAGSADKTTSG
VSSNTNPPAKVVYPDTSKMTVYDPRQIPGPAALAAPSASGTLPYSGPFSSNGPPIALNDI
LKSLPPAFAAFVANLPAVEGPSPDADFVISVCLQSNIPAATGKSGTASLPLLSGAAPSTS
DLSDSSKFRPRDRQPGKRKDMDRPEDDESTTMQSQPLPRDLFKIRQLQKNRVGNSSRVTS
SYTGSASYGSALSGDLSGSTS*

Transcript Sequence

Transcript ID

Solyc10g050540.2.1
Transcript Infomation

Cleavage stimulation factor subunit 3 (AHRD V3.3 *** W9R731_9ROSA)
Sequence

TTAAACAAGTAACTTTGAACATTTTTGTTCACAACTTTTTAACCTTTTCCTCAAAACAAT
GAAGGTCAGCTCGACTTGAGATTTTCCGGCGGCATCTGTCAACTGAAGCGCTTTTCTCCC
TTTCGTTTTGCTTCAGAATATTGTGAGCAGTTGCAAAGGAGCAAACCCTATAATCTGCTC
CAGTTCGATTCCGCAAGCAGGGTTTTCTGCAGATTGAACTGTGTTTTTTGAATTTACAGA
AGAAGGGTTACCTCAATACTGAGGTGGGGTACTTTTAAATTTATTAAAGGTTGGACTTTT
AGAGGATGATACAGTAGGCAAAGATCTATGACGGACAAGTACAATGTTGAAGCTGCAGAA
ATTCTTGCGAATGAGGCACTGCGCTCGCCAATTTCGGGAGCAGTGCCTATATATGAGCAG
CTTCTATCGACGTTTCCCACAGCGGCAAAATACTGGAAGCAATATGTTGAGGCACACATG
GCGGTAAATAATGATGATGCGACAAAACAAATATTTAGTCGCTGCCTGTTAAACTGTCTA
CAGATTCCACTTTGGCGCTGTTACATCCGCTTTATCAGGAAAGTCAACGACAAGAGGGGG
AATGAGGGTCAAGAAGAGACGAGAAAAGCTTTTGATTTCATGCTTAACTATGTTGGAGCG
GACATAGCATCAGGTCCGGTGTGGATGGAGTACATTGCATTTTTAAGGTCTTTGCCTGCT
CCGACCGCACAAGAAGAATCACAACGAATGACCTCTGTGAGGAAAATATACCAGAGAGCT
ATTGTCACCCCAACCCATCATGTGGAACAGCTTTGGAGGGACTATGAGAATTTTGAAAAT
TCAATTAGTCGAGCCTTGGCAAAAGGACTGGTTTCTGAGTATCAACCTAAATATAACAGT
GCGAGGGCTGTATATAGAGAAAGGAAGAAGTACACTGATGAAATTGATTGGAATATGCTA
GCGATTCCGCCCTCTGGATCTTCCAAGGAGGAAATGCAATGGATGGCATGGAAAAAACTT
CTAGCCTTTGAAAAGGCAAACCCACAGAGGATAGACAGTGCTTCTGCTAATAAAAGAATT
GTGTTCACATATGAGCAGTGCCTCATGTTCTTGTATCATTATCCTGATATATGGTATGAA
TATGCCACATGGCATGCAAAAGCTGGTTCAGTAGACTCCGCTATCAAGGTTTTCCAGCGA
GCTTTGAAAGCACTTCCTGACTCGGAGATGCTGAGATATGCTTATGCTGAACTTGAGGAA
TCACGTGGAGCCATTCAGGCTGCTAAAAAGGTATATGAAAGTCTTTTTGGGGATGGATCC
AATGCCTCTGCACTATCACATATCCAGTTTATAAGGTTTTTAAGAAGAAGTGAAGGAGTT
GAAGCAGCTCGCAAATACTTTGTTGATGCACGCAAGTCCCCAAATTGCACTTACCATGTT
TATGTAGCTTATGCAATGATGGCCTTTTGTCTAGACAAGGATGCAAAGATGGCGCACAAT
GTTTTTGAAGCAGGGTTAAAACGTTTTATGCATGAGCCTGGATACATCCTTGAGTATGCA
GATTTTCTTTATCGTTTGAATGACGATAGAAATATCAGGGCATTATTTGAACGTGCATTG
AGCTCACTGCCGCCAGAGGAATCTGTTGAGGTTTGGAAAAAGTTCACTCAATTTGAGCAA
ACATATGGAGACCTTGCCAGCATGTTGAAGGTTGAGCAGAGAAGGAAAGAAGCTCTTTCT
AGAACAGGTGATGATGGAGCATCAGAGTTAGAGAGTTCGTTGCATGATGTTGTATCACGC
TACAGTTTCATGGATCTTTGGCCTTGCTCTTCAAACGACTTGGATCATTTAGCACGCCAA
GAGTGGCTCGCGAGGAACATCAATAAAAAACCTGACAAACCTACTCTTGGTATTGAGGCA
GGTTCTGCAGACAAGACTACTTCTGGTGTTTCATCCAATACAAATCCGCCTGCTAAGGTT
GTGTATCCAGATACTTCAAAAATGACGGTTTACGACCCGAGGCAAATTCCAGGTCCTGCT
GCGCTTGCAGCTCCATCTGCTTCAGGCACCTTGCCCTATTCTGGTCCATTTAGCAGCAAT
GGACCTCCAATTGCCCTTAATGATATTTTGAAATCCTTGCCCCCTGCATTTGCAGCGTTC
GTAGCAAATTTGCCAGCTGTTGAAGGTCCTTCTCCTGATGCTGATTTTGTGATATCTGTA
TGTTTGCAAAGCAACATCCCTGCAGCAACTGGAAAATCCGGGACTGCCTCTCTGCCATTG
CTGTCAGGCGCTGCTCCATCTACGAGTGACCTCTCTGATTCAAGCAAATTCAGGCCGAGA
GACAGACAGCCTGGAAAGAGGAAAGACATGGACAGACCAGAGGATGATGAATCAACGACT
ATGCAAAGCCAGCCCCTTCCTAGAGATCTTTTCAAGATTCGCCAATTACAAAAAAACCGT
GTTGGTAATTCGTCTCGAGTTACTAGTTCATACACAGGATCAGCATCATACGGAAGTGCG
CTTTCAGGAGATCTCTCGGGCAGCACTAGTTGACCTCGGACTTGTTTCTTAGTTTTCAAC
TGAGCAGCAGACCGATGTGACTGATAGATGAGGCGACATACATTCCAATCTCTGCCATTT
GCGTCTGGCCATTCTGTAGTGTACTCTATTTTGCTGAGATGTAATATTAACATTTACATG
TCATTATAATTAATCTTATTTTTCAGATGTTCCATTTATAAAGAACAGATCCCTGTTCAA
GAAAGCTACATGCAACGATCAACGTTGTTTGGCATGATTAGTGAAAGTGGTGGACTATTT
CCCAAGTCAGAAGGTCGCCCTCTAGCCCAACAATGGAGCTAAGCATATACAACTCGACAT
TTCTTTCGATAGTGAGATGTCACTTTTCATATAAGTTATATCATGTAGAGTAACTATCTG
AGAGTGATTACAAGAAAATGTTCTGGTGGCTAACAATGAGAATTTTGTTTGATAAATGTG
CTGGGAAGTATTGGTTTTTAGAATTATATTGTATTGTATTTGAGTTGTTAATTCTTATTG
AAGTTGGATATTGTGACTACTAGTGAGAAGCATTTGATATTGTTCTACTTAGTGGTTACG
ATCTTGGTGCAATTATTTTTTCAGAAATGTATCAATGCCTTAAAAGAAGAGAAAGTTAGA
AAGAAGTAGAATGTAAAACAAAAATTCTACTCATTTTAAAAGAGAAGTAATAGTGTATTC
ATGCAAAATAAAAAAAAATCACTGAATCATAATGGGACTGTTTGGTACGAGTGATGAAAT
AAAGGATATCTTTCGGAATAAGACCTAGCTTAACTTTCTTTTTGAGTCATCAACAAGGGA
ATAAGACTTCGCTTTACTTTCTTTTTTACTCATCAATATCTGCCAGCGGGTCTCTGCTAT
TTTCTTTAATGGTCAATTAGTTATGAAATTATTAAAAATATTTCAACTTACTTTTTTTTT
TGGGGTTGGGATACATTGTTAGATTATTTTATCCCACTTATATTGGATAGTAATTTCATA
AATCTAGTACAAATATGGGATAATACAATTTCATGATTAGTTAATACCTCAAACTAACTA
TAACATAAAGTTAATTTGAATTTGATCGGAAGATTATTATTCTTTTATCTCACGTGTTAA
ATGGCTCTTATTACTTACTTCAAACG