Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g049890.2.1
CDS Infomation

D-3-phosphoglycerate dehydrogenase (AHRD V3.3 *** K4D0E5_SOLLC)
Sequence

ATGGCGGCATCTGCTTCTTCTGCTATCAATCTCTCCATCAAACCCTCACATACCTCTCTC
TCATGGAAAACTCATCTCTCTTCTACCTCCGCCTTAGCCGTTTCTCCTCTCTCCGGCCAC
CGTCATTATCCGCGTTTCGTTATCTACGCTGTGGGAGATAAACCGACGGTTCTCGTAGCT
GAAAAACTCGGTGAGGCAGGGGTCAATCTCCTTAAGGAATTTGCTGATGTTGATTGTTCT
TATAACCTGACTCCTGAGGAGCTCTGTAATAAGATCTCATTGTGTGATGCGTTGATTGTG
AGGAGTGGTACGAAGGTGAGCAGAGAGGTATTTGAGTCATCTGGTGGACGGCTTAAAGTT
GTTGGACGTGCTGGTGTTGGTATTGATAATGTCGATCTTGCAGCCGCGACTGAGCATGGA
TGTCTTGTTGTAAATGCCCCGACTGCTAATACTGTTGCTGCTGCTGAGCATGGAATCTCG
TTACTCACAGCTATGGCTCGAAATGTTGCTCAGGCGGATGCTTCCGTGAAAGCTGGGAAA
TGGCTGAGAAACAAATATGTTGGTGTCTCATTAGTTGGCAAAACACTTGCTGTGATGGGT
TTTGGAAAGGTTGGATCAGAAGTCGCCAGGCGAGCTAAGGGGCTTGGCATGCATGTTATT
GCTCATGATCCATATGCCCCTGCTGATCGTGCACGTGCCATTGGGGTGGAGCTCGTTAGC
TTTGATAAAGCCATTGCTTCTGCAGATTTTATCTCACTTCACATGCCCCTTACTCCTGCA
ACTAACAAGGTCCTAAATGATGAAACTTTTGCAAAGATGAAAAAGGGAGTACGAATTGTA
AACGTTGCTCGTGGGGGAGTGATTGATGAAGATGCTTTGGTCAGGGCACTTGATGCAGGA
ATTGTGGCACAGTTGCAGGCGGCACTTGATGTTTTCACCGTGGAGCCACCAAAGGACAGT
AAGTTGGTTCAACATGAGAATGTGACTGCAACTCCTCATCTTGGTGCTAGTACTATGGAA
GCTCAGGAAGGAGTGGCCATTGAGATAGCAGAAGCTGTTGTTGGAGCTTTGAATGGAGAG
CTTGCAGCTACTGCTGTCAATGCTCCAATGGTGCCTGCTGAGGTTCTCTCTGAGCTGAAG
CCTTTTGTTGCACTGGCTGAAAAACTTGGTAGACTTGCTGTCCAACTAGTGGCAGGTGGA
AGTGGTGTGAAATCAGTGAAAGTAACTTATGGTTCAGCTAGAGGACCTGATGATCTTGAC
ACGAGATTGCTTCGGGCGATGATAACCAAGGGATTGATTGAGCCTATTTCCAGTTCTTTT
GTGAACTTGGTAAATGCAGATTTCACAGCTAAACAGAGGGGACTGAGAATAGCTGAACAA
AGATCTCTTCTAAATGGTTCTCCAGAAAGTCCACTCGAATTCATTCAGGTTCAGATTTCC
AGTGTGGAGTCCAAGTTTGCCAGTGCTCTTTCCGACTCTGGAGAGATTAGAGTGGAGGGG
AGAGTTAAAGATGGAATCCCTCATTTGACAAAAGTTGGATCTTTTGAAGTGGATGTGAGC
TTAGAGGGCAGCATCATTCTGTGCAGACAGGTTGATCAGCCCGGAATGATTGGAAAGGTG
GGTAGCATCTTGTCTGAGGGGAATGTGAACGTAAGCTTCATGAGCGTTGGAAGGGTTGCT
CCAAGGAAGCATGCTGTTATGGCTATTGGGGTGGATGACCAACCAAGCAATGAGATATTG
AAGAGGATTGGTGAAATTCCTGCTGTTGAGGAGTTTGTTTACCTAAAGATATAG

Peptide Sequence

PEP ID

Solyc10g049890.2.1
PEP Infomation

D-3-phosphoglycerate dehydrogenase (AHRD V3.3 *** K4D0E5_SOLLC)
Sequence

MAASASSAINLSIKPSHTSLSWKTHLSSTSALAVSPLSGHRHYPRFVIYAVGDKPTVLVA
EKLGEAGVNLLKEFADVDCSYNLTPEELCNKISLCDALIVRSGTKVSREVFESSGGRLKV
VGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGISLLTAMARNVAQADASVKAGK
WLRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVELVS
FDKAIASADFISLHMPLTPATNKVLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDAG
IVAQLQAALDVFTVEPPKDSKLVQHENVTATPHLGASTMEAQEGVAIEIAEAVVGALNGE
LAATAVNAPMVPAEVLSELKPFVALAEKLGRLAVQLVAGGSGVKSVKVTYGSARGPDDLD
TRLLRAMITKGLIEPISSSFVNLVNADFTAKQRGLRIAEQRSLLNGSPESPLEFIQVQIS
SVESKFASALSDSGEIRVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKV
GSILSEGNVNVSFMSVGRVAPRKHAVMAIGVDDQPSNEILKRIGEIPAVEEFVYLKI*

Transcript Sequence

Transcript ID

Solyc10g049890.2.1
Transcript Infomation

D-3-phosphoglycerate dehydrogenase (AHRD V3.3 *** K4D0E5_SOLLC)
Sequence

CCTACCACCACCTTTAACTTCTCTATAATCGCTCCTCGATCGACGAGCGTATATATAAAT
AAATACATATAAAAAAAATTCATTTTTTCTTCCTCATTTCTTCACCTCTTCGATTCATCA
CTCTTCTATTGATTTGTTTACAATGGCGGCATCTGCTTCTTCTGCTATCAATCTCTCCAT
CAAACCCTCACATACCTCTCTCTCATGGAAAACTCATCTCTCTTCTACCTCCGCCTTAGC
CGTTTCTCCTCTCTCCGGCCACCGTCATTATCCGCGTTTCGTTATCTACGCTGTGGGAGA
TAAACCGACGGTTCTCGTAGCTGAAAAACTCGGTGAGGCAGGGGTCAATCTCCTTAAGGA
ATTTGCTGATGTTGATTGTTCTTATAACCTGACTCCTGAGGAGCTCTGTAATAAGATCTC
ATTGTGTGATGCGTTGATTGTGAGGAGTGGTACGAAGGTGAGCAGAGAGGTATTTGAGTC
ATCTGGTGGACGGCTTAAAGTTGTTGGACGTGCTGGTGTTGGTATTGATAATGTCGATCT
TGCAGCCGCGACTGAGCATGGATGTCTTGTTGTAAATGCCCCGACTGCTAATACTGTTGC
TGCTGCTGAGCATGGAATCTCGTTACTCACAGCTATGGCTCGAAATGTTGCTCAGGCGGA
TGCTTCCGTGAAAGCTGGGAAATGGCTGAGAAACAAATATGTTGGTGTCTCATTAGTTGG
CAAAACACTTGCTGTGATGGGTTTTGGAAAGGTTGGATCAGAAGTCGCCAGGCGAGCTAA
GGGGCTTGGCATGCATGTTATTGCTCATGATCCATATGCCCCTGCTGATCGTGCACGTGC
CATTGGGGTGGAGCTCGTTAGCTTTGATAAAGCCATTGCTTCTGCAGATTTTATCTCACT
TCACATGCCCCTTACTCCTGCAACTAACAAGGTCCTAAATGATGAAACTTTTGCAAAGAT
GAAAAAGGGAGTACGAATTGTAAACGTTGCTCGTGGGGGAGTGATTGATGAAGATGCTTT
GGTCAGGGCACTTGATGCAGGAATTGTGGCACAGTTGCAGGCGGCACTTGATGTTTTCAC
CGTGGAGCCACCAAAGGACAGTAAGTTGGTTCAACATGAGAATGTGACTGCAACTCCTCA
TCTTGGTGCTAGTACTATGGAAGCTCAGGAAGGAGTGGCCATTGAGATAGCAGAAGCTGT
TGTTGGAGCTTTGAATGGAGAGCTTGCAGCTACTGCTGTCAATGCTCCAATGGTGCCTGC
TGAGGTTCTCTCTGAGCTGAAGCCTTTTGTTGCACTGGCTGAAAAACTTGGTAGACTTGC
TGTCCAACTAGTGGCAGGTGGAAGTGGTGTGAAATCAGTGAAAGTAACTTATGGTTCAGC
TAGAGGACCTGATGATCTTGACACGAGATTGCTTCGGGCGATGATAACCAAGGGATTGAT
TGAGCCTATTTCCAGTTCTTTTGTGAACTTGGTAAATGCAGATTTCACAGCTAAACAGAG
GGGACTGAGAATAGCTGAACAAAGATCTCTTCTAAATGGTTCTCCAGAAAGTCCACTCGA
ATTCATTCAGGTTCAGATTTCCAGTGTGGAGTCCAAGTTTGCCAGTGCTCTTTCCGACTC
TGGAGAGATTAGAGTGGAGGGGAGAGTTAAAGATGGAATCCCTCATTTGACAAAAGTTGG
ATCTTTTGAAGTGGATGTGAGCTTAGAGGGCAGCATCATTCTGTGCAGACAGGTTGATCA
GCCCGGAATGATTGGAAAGGTGGGTAGCATCTTGTCTGAGGGGAATGTGAACGTAAGCTT
CATGAGCGTTGGAAGGGTTGCTCCAAGGAAGCATGCTGTTATGGCTATTGGGGTGGATGA
CCAACCAAGCAATGAGATATTGAAGAGGATTGGTGAAATTCCTGCTGTTGAGGAGTTTGT
TTACCTAAAGATATAGGCACTATCAGATTTTCTGTCTGAATGCTCTCTATGAAGTCAATT
TTGGTATTGTTGTGTTTTGTCTACAAGTAGGATAATGTAGGAGAGAAAAATAACTTGGAT
GTGAAATTACAAACTGTACTACATTGAGTTGTCAATTTGACAGTTTTTTTTCTTTTTTTT
GCTTCACGGGGTTTGAGCATTGGATTTTTCCTCGGTCAAATTTGTATTTGGTGATTTGTT
TTATCAGTTACTAGATGCCACATTTGTTGTAGGGAAATTTGATGTGACCATAGAGTTTGA
AATCCAACAGAAAATACTTC