Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g049660.2.1
CDS Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** B9HMY5_POPTR)
Sequence

ATGAAGTTCATGAAACTTGGATCCAAACCTGATACATTTCAGTCAGATGGGAAAAATATC
AGATATGCTGCTTCAGAGTTGGATTCTGATATCGTTGTTAGTGTAGGAGACGTGAAGTTT
CATCTGCATAAGTTCCCTCTTCTGTCGAAGAGTGCTCGTTTGCAAAAGATGGTTACAAAC
TCAAGTGAAGGAGGTAGTGATGAAGTTCACATTCATGACGTTCCGGGAGGACCTACTGCC
TTTGAAATGTGTGTCAAGTTTTGTTACGGTATGACAGTTACACTGAATGCTTATAATGTC
ATAGCAGCAAGGTGCGCTGCAGAGTATCTTGGAATGGATGAGACTGTTGAGAAAGGAAAT
CTTATTTACAAGATTGATGTTTTCTTACACTCGACCATTTTCCGAAGCTGGAAAGATTCG
ATAATATTTCTTCAGACCACTAAATCTAGGTTACCTCTGTCTGAGGAAGTGAAGTTGATC
AGCCACTGTACTGATGCTATAGCATCCAAGACGTCTATTGATGTTCACAAGGTTGATTGG
TCTTATACCTATAACCGGACCAAGATACCAGAGGAAAATGGAAATGGTCCTAACTCGAAT
GGACTTAGAAGCCGTGTCGTGCCAAATGATTGGTGGGTTGATGACTTATGTGAGCTTGAA
ATAGATCTTTATAAACGGGTTATGGTCAACATAAAGAACAAAGGGATTGTTTCCTCCGAA
GTGATTGGAGAATCTATTAAAGCTTATACTTTGAGAAGGTTCCCGGGCTTTAGGAAGGGT
GTTTGCCAGTTCAGTGATGTGTCCAGATCGCGCTCAATATTGGATACGGTTGTATGTCTA
TTACCTGCTGAAAAAGGTAGTGTCTCTTGTAGTTTCTTGTTGAAATTGCTAAAAGCATCC
ATTTCTGTAGATTCTGGAGAAAAGGTAAAGGCAGAGCTTGTAAAAAGAATAGGACAGCAA
CTGGAGGAGGCTTCTGTTAATGCTCTTTTGATTCGAGCTACAGATGGGGAAGCGACAATG
TATGATGTCCATGTCTTCCACAAGATACTAGAGAACTTTGTGATGCATAATGAGGATTTG
AAAACTCAGTCGGAAGATGGTAATGAAATTCCAGGGGTTTTATCAGAAGCTTCAAAGCTT
ATGGTGGCGAAGCTAGTAGATGGATACCTTACAGAAATTGCCAAGGATCGTAATCTCCCT
TTGGCAATATTTGTTGGTCTAGCAGAGATGGTAACAGACTTCCCTCGCCCTAGTCATGAC
AGCCTTTATCGAGCAATTGATATATACCTCAAGGAGCACCCTGGGATCAGCAAGAATGAC
AGAAAGAGAATTTGCTGTTTGATGGATTGCAAGAAGCTCTCAGTTGATGCATGTACACAT
GCTGTGCAAAATGACAGACTTCCATCACGCGTTGTCGTACAAGTTCTCTTCTTTGAGCAA
GTCAGGGCCAATGCATCATCAGGGAGTAGCACTCCGGATCTTCCCAAAGCTATTAGAGAC
CTCACTAGTGCTTCATATGGGAGCTCAAGGTCAGCGATAACAAATACAGAGAATTCGGAG
GTTACAGCCTCTGCAGAAGAACTGAGGGCTTTGAAAGAGGAGTTAGCAGCCTTAAGATTG
GCAAATGGAGGACTAAATGGTGATACCAAACGTCACGTTGACAAGGCTACCAATGGTAGA
ATGAAAAGTATACTTTCATCAAAGAAGATATTTACAAAAATTTGGTCAAGCAAAGGCAGG
AGGAAACAAGGGGAAAATAGTGGCTCAGATTCACCTGACAGCTTAGAAGAAGCTAAGTAC
ACACCTTCAAGAAAAGGAAGATATTCAGTTTCTTAA

Peptide Sequence

PEP ID

Solyc10g049660.2.1
PEP Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** B9HMY5_POPTR)
Sequence

MKFMKLGSKPDTFQSDGKNIRYAASELDSDIVVSVGDVKFHLHKFPLLSKSARLQKMVTN
SSEGGSDEVHIHDVPGGPTAFEMCVKFCYGMTVTLNAYNVIAARCAAEYLGMDETVEKGN
LIYKIDVFLHSTIFRSWKDSIIFLQTTKSRLPLSEEVKLISHCTDAIASKTSIDVHKVDW
SYTYNRTKIPEENGNGPNSNGLRSRVVPNDWWVDDLCELEIDLYKRVMVNIKNKGIVSSE
VIGESIKAYTLRRFPGFRKGVCQFSDVSRSRSILDTVVCLLPAEKGSVSCSFLLKLLKAS
ISVDSGEKVKAELVKRIGQQLEEASVNALLIRATDGEATMYDVHVFHKILENFVMHNEDL
KTQSEDGNEIPGVLSEASKLMVAKLVDGYLTEIAKDRNLPLAIFVGLAEMVTDFPRPSHD
SLYRAIDIYLKEHPGISKNDRKRICCLMDCKKLSVDACTHAVQNDRLPSRVVVQVLFFEQ
VRANASSGSSTPDLPKAIRDLTSASYGSSRSAITNTENSEVTASAEELRALKEELAALRL
ANGGLNGDTKRHVDKATNGRMKSILSSKKIFTKIWSSKGRRKQGENSGSDSPDSLEEAKY
TPSRKGRYSVS*

Transcript Sequence

Transcript ID

Solyc10g049660.2.1
Transcript Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** B9HMY5_POPTR)
Sequence

GCTCAGAAGTTTAAAAGGCATTATGTATTATGCCTATATACATATATCCTACTCATATTT
GAGATCCTGTTAATTTTCCTTCATTCTCCATATCTGAGTAATTTTGGTCATTGGGGATAT
AAGGTTATGAACATAAGCTAGTGTTTAGGAAAAGATTAACTTGCCAAAAATGAAGTTCAT
GAAACTTGGATCCAAACCTGATACATTTCAGTCAGATGGGAAAAATATCAGATATGCTGC
TTCAGAGTTGGATTCTGATATCGTTGTTAGTGTAGGAGACGTGAAGTTTCATCTGCATAA
GTTCCCTCTTCTGTCGAAGAGTGCTCGTTTGCAAAAGATGGTTACAAACTCAAGTGAAGG
AGGTAGTGATGAAGTTCACATTCATGACGTTCCGGGAGGACCTACTGCCTTTGAAATGTG
TGTCAAGTTTTGTTACGGTATGACAGTTACACTGAATGCTTATAATGTCATAGCAGCAAG
GTGCGCTGCAGAGTATCTTGGAATGGATGAGACTGTTGAGAAAGGAAATCTTATTTACAA
GATTGATGTTTTCTTACACTCGACCATTTTCCGAAGCTGGAAAGATTCGATAATATTTCT
TCAGACCACTAAATCTAGGTTACCTCTGTCTGAGGAAGTGAAGTTGATCAGCCACTGTAC
TGATGCTATAGCATCCAAGACGTCTATTGATGTTCACAAGGTTGATTGGTCTTATACCTA
TAACCGGACCAAGATACCAGAGGAAAATGGAAATGGTCCTAACTCGAATGGACTTAGAAG
CCGTGTCGTGCCAAATGATTGGTGGGTTGATGACTTATGTGAGCTTGAAATAGATCTTTA
TAAACGGGTTATGGTCAACATAAAGAACAAAGGGATTGTTTCCTCCGAAGTGATTGGAGA
ATCTATTAAAGCTTATACTTTGAGAAGGTTCCCGGGCTTTAGGAAGGGTGTTTGCCAGTT
CAGTGATGTGTCCAGATCGCGCTCAATATTGGATACGGTTGTATGTCTATTACCTGCTGA
AAAAGGTAGTGTCTCTTGTAGTTTCTTGTTGAAATTGCTAAAAGCATCCATTTCTGTAGA
TTCTGGAGAAAAGGTAAAGGCAGAGCTTGTAAAAAGAATAGGACAGCAACTGGAGGAGGC
TTCTGTTAATGCTCTTTTGATTCGAGCTACAGATGGGGAAGCGACAATGTATGATGTCCA
TGTCTTCCACAAGATACTAGAGAACTTTGTGATGCATAATGAGGATTTGAAAACTCAGTC
GGAAGATGGTAATGAAATTCCAGGGGTTTTATCAGAAGCTTCAAAGCTTATGGTGGCGAA
GCTAGTAGATGGATACCTTACAGAAATTGCCAAGGATCGTAATCTCCCTTTGGCAATATT
TGTTGGTCTAGCAGAGATGGTAACAGACTTCCCTCGCCCTAGTCATGACAGCCTTTATCG
AGCAATTGATATATACCTCAAGGAGCACCCTGGGATCAGCAAGAATGACAGAAAGAGAAT
TTGCTGTTTGATGGATTGCAAGAAGCTCTCAGTTGATGCATGTACACATGCTGTGCAAAA
TGACAGACTTCCATCACGCGTTGTCGTACAAGTTCTCTTCTTTGAGCAAGTCAGGGCCAA
TGCATCATCAGGGAGTAGCACTCCGGATCTTCCCAAAGCTATTAGAGACCTCACTAGTGC
TTCATATGGGAGCTCAAGGTCAGCGATAACAAATACAGAGAATTCGGAGGTTACAGCCTC
TGCAGAAGAACTGAGGGCTTTGAAAGAGGAGTTAGCAGCCTTAAGATTGGCAAATGGAGG
ACTAAATGGTGATACCAAACGTCACGTTGACAAGGCTACCAATGGTAGAATGAAAAGTAT
ACTTTCATCAAAGAAGATATTTACAAAAATTTGGTCAAGCAAAGGCAGGAGGAAACAAGG
GGAAAATAGTGGCTCAGATTCACCTGACAGCTTAGAAGAAGCTAAGTACACACCTTCAAG
AAAAGGAAGATATTCAGTTTCTTAATCCTAAATTAGTATTTTCTTTTCTGGGGATTATTT
CTTTCCTTTTTCCTCCTAAACTTAGTTTTCCTTAAATGAATTTACCATGTCAAAAAGACA
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