Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g045540.2.1
CDS Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT1G56440.1)
Sequence

ATGGCGAGGGTTCCAAGCAATCACTCTCGCGATCAATTTCAGGATATGCAGGGGCTCTTT
AATAACTTGCAAGATTGGGAATTAGCATTGAAAGGTAAAGACAAAAAGATGAAATCTCAG
GCTGGTGGCAAAGAGACGTTGAAAGAAGACTGGAGCCGTACTAGTGAACCTCTTACTAGT
CCTCAAGCTAATGGGACACAACAAGTTGGCAAATCTACCTCGATCAGAAATGCAGCTGGT
CCATATAGTTATTCTAAAAATTACAATCCAATTAGCCATCTATCAAGTGAACTGATATCG
GAAGAGAGCAACATCAACGCCAATTCGGAGAAAGAGCTGGGTAATGAGTGCTTTAAGCAG
AAAAAGTTCAATGAAGCCATTGATTGCTATTCTCGAAGCATTGCACTTTCACCAACTGCA
GTCTCTTATGCCAATAGAGCGATGGCTTATCTTAAAATCAAAAGGTTTCAAGAGGCAGAG
AACGACTGCACAGAGGCCTTGAATCTGGATGATCGTTACATTAAAGCTTATTCTCGCCGT
TCAACTTCTAGGAAAGAACTTGGGAAATTGAAAGAATCAATTGAAGATGCTGAATTTGCG
TTGTGGTTGGAACCACGGAACCCAGAGATCAAGAAGCAGTATGGAGAAGTTAAGGCTCTG
TATGAGAAGGAGATTCTTAAAAGAGTATCAGGAGCAACAGATGTTTCTGCACAAGGGCCT
CAAAAATCTGGAAAGACAATTAAAATTGGCCCTGTAATCCAATCTGTATCAAGTAGTTCT
CAAAAGGTGGCTGAAGTTCGGACGATTCCTGCCAAGGAAAACAATAGAGATGTTCTTGGG
ACTGCTAAAGTTGAAGATACTCATATGCAGATTAGCAACAAAGATTCAGATGCTTCTCCA
ACCGTTCCTACCCTAAATCTTGCCTTTGGGACTGCAAAGAAAACTCACAAAATAAGCAAG
CAAGAACTCGAGGAATCTGTCCAAGAGCTTGCTGCTCGAGCAGCTGGTCTTGCAAAGACT
GAAGCTGCAAAAAATATTGCAGCACCAAATTCAGCCTATCAGTTTGAGGTTTCTTGGCGG
GGACTTTCTGGTGATCGTAATCTGCAAACTCAATTATTGAAGGTCACTTCACCTGCAATG
TTACCCCGAATATTTAAAAATGCATTATCTGCTCCGATGCTCATGGACATTGTAAGATGT
ATTGCCACATTTTTCATTGAAGATATGAATTTGGCAATTAGATACCTGGAAGATCTGACG
AAGGTACCAAGGTTCGACATGATCATCATGTGCCTTTCATCCGCTGATAAATCTGAACTT
CTCAAGATATGGGAAGAGATCTTCTGTAAGGTAGCTGAGGAGCACTCTGCTACACTTGGT
GCACTTCGCGTCTCATATGGCCTAAAACAATGA

Peptide Sequence

PEP ID

Solyc10g045540.2.1
PEP Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT1G56440.1)
Sequence

MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETLKEDWSRTSEPLTS
PQANGTQQVGKSTSIRNAAGPYSYSKNYNPISHLSSELISEESNINANSEKELGNECFKQ
KKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRR
STSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEKEILKRVSGATDVSAQGP
QKSGKTIKIGPVIQSVSSSSQKVAEVRTIPAKENNRDVLGTAKVEDTHMQISNKDSDASP
TVPTLNLAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAPNSAYQFEVSWR
GLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIATFFIEDMNLAIRYLEDLT
KVPRFDMIIMCLSSADKSELLKIWEEIFCKVAEEHSATLGALRVSYGLKQ*

Transcript Sequence

Transcript ID

Solyc10g045540.2.1
Transcript Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT1G56440.1)
Sequence

ATAATTAGAGACGGGAGTAGAAACTTTGATTTTGACTAGTTAAAGTTATCACATTTTTAA
TTCATGTCTTTAAAAAATCATTTCTTTAATTTCAAAACACTTGTTAGACACCCTCTACTC
ATTTTTCACTACTTACTATATTTACTTTTTTTTTTTAAATTAAAAAAAGAAAGATTTCAG
ATTGCATCAGACTAACCCAGAACCCTCTAGTGAAAACAACAAAAACCCTCAAGCTCGACG
CCAATGGCGAGGGTTCCAAGCAATCACTCTCGCGATCAATTTCAGGATATGCAGGGGCTC
TTTAATAACTTGCAAGATTGGGAATTAGCATTGAAAGGTAAAGACAAAAAGATGAAATCT
CAGGCTGGTGGCAAAGAGACGTTGAAAGAAGACTGGAGCCGTACTAGTGAACCTCTTACT
AGTCCTCAAGCTAATGGGACACAACAAGTTGGCAAATCTACCTCGATCAGAAATGCAGCT
GGTCCATATAGTTATTCTAAAAATTACAATCCAATTAGCCATCTATCAAGTGAACTGATA
TCGGAAGAGAGCAACATCAACGCCAATTCGGAGAAAGAGCTGGGTAATGAGTGCTTTAAG
CAGAAAAAGTTCAATGAAGCCATTGATTGCTATTCTCGAAGCATTGCACTTTCACCAACT
GCAGTCTCTTATGCCAATAGAGCGATGGCTTATCTTAAAATCAAAAGGTTTCAAGAGGCA
GAGAACGACTGCACAGAGGCCTTGAATCTGGATGATCGTTACATTAAAGCTTATTCTCGC
CGTTCAACTTCTAGGAAAGAACTTGGGAAATTGAAAGAATCAATTGAAGATGCTGAATTT
GCGTTGTGGTTGGAACCACGGAACCCAGAGATCAAGAAGCAGTATGGAGAAGTTAAGGCT
CTGTATGAGAAGGAGATTCTTAAAAGAGTATCAGGAGCAACAGATGTTTCTGCACAAGGG
CCTCAAAAATCTGGAAAGACAATTAAAATTGGCCCTGTAATCCAATCTGTATCAAGTAGT
TCTCAAAAGGTGGCTGAAGTTCGGACGATTCCTGCCAAGGAAAACAATAGAGATGTTCTT
GGGACTGCTAAAGTTGAAGATACTCATATGCAGATTAGCAACAAAGATTCAGATGCTTCT
CCAACCGTTCCTACCCTAAATCTTGCCTTTGGGACTGCAAAGAAAACTCACAAAATAAGC
AAGCAAGAACTCGAGGAATCTGTCCAAGAGCTTGCTGCTCGAGCAGCTGGTCTTGCAAAG
ACTGAAGCTGCAAAAAATATTGCAGCACCAAATTCAGCCTATCAGTTTGAGGTTTCTTGG
CGGGGACTTTCTGGTGATCGTAATCTGCAAACTCAATTATTGAAGGTCACTTCACCTGCA
ATGTTACCCCGAATATTTAAAAATGCATTATCTGCTCCGATGCTCATGGACATTGTAAGA
TGTATTGCCACATTTTTCATTGAAGATATGAATTTGGCAATTAGATACCTGGAAGATCTG
ACGAAGGTACCAAGGTTCGACATGATCATCATGTGCCTTTCATCCGCTGATAAATCTGAA
CTTCTCAAGATATGGGAAGAGATCTTCTGTAAGGTAGCTGAGGAGCACTCTGCTACACTT
GGTGCACTTCGCGTCTCATATGGCCTAAAACAATGATGTAGCTTTTCTGGTCCAGTTAAC
GCGGGAAGCTGACATTCTTGTATTATTATCAGATTTTTGTTATTCTACAAAGCAAACATG
CATGTGGATATAGTTTGATATTGAAATGGGAATTTTCTTGTTGAAATTCTGTACCGATAT
CTTCAAGATGTTTGACGACTCCTGATAGGAAAATTTTGATATTTCCATGAGTGTTACGTT
GCCATTTTTCTTTGGTACTGACATCATTTTTCTGGAGCTAAGATGGTTACTCTTTGTCTT
CCATTAAGATGGAAAGGTTGCACAAACTTGTCACGGTGTTTACTGAGATGTTGCTTTTAA
TTCTCTAGCAAGTTTGTTGATTCATGGTGTAAGTTGTGATTTCTGGTTGGTCATAGCTAC
AAGCATGATTTTACGGAATTTCACCAAGTGTTTGGAGCTTCCAAAACCCTTTTGAACCAG
ACTTTCAACAGCATTATTGAAGATACTATTTTGTGTTAAGTAGTTCTTTAATACATGTAT
TAAAATCAAATGGCAATGAAAATCCTAACCATCTCTTCAAAGAATAGTATAGGCGGAATG
TAATGACCTACCTTCTTGTTATGCCTGTTTAGGGCTATAGAACACTAGTATAGGTCCTCG
TGGGCTGAGGATTGACAAAAATCTGAAAAATAGAACTAAGTGAAAATTTCTA