Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g017530.3.1
CDS Infomation

RNA helicase DEAD33
Sequence

ATGAATCCCAGAGGAAGATATCCACCGCCGGGAATGGGAAGCGGCGGCGGAGGCGGCGGA
CGCGGGGGCGGAAACATGTACCCTAACGCTAACCCTAATTTTCAACCGAGAAATCCACAG
CAGTATGTGCAGAGAGGTCCGGTGAACCAGCAGCAGCAGTTTCAGAACCAACAGGCACAG
CAATGGCTCAGAAGGAACCAGTTGGCATCTGATTCTACGGTTGATGAGGTTGAAAAGACG
GTACAATCTGAAGCAGTTGATCAAAGTTCACAAGACTGGAAGGCGAGGTTGAAGATACCA
CCAGCGGATACTAGATACAGGACAGAGGATGTGACAGCGACCAAGGGAAATGAATTTGAA
GACTATTTTCTTAAGCGTGAATTGCTTATGGGAATTTATGAAAAGGGTTTTGAAAGACCA
TCTCCAATCCAGGAAGAGAGTATCCCAATTGCTCTTACTGGGAGTGATATTTTGGCGAGG
GCCAAAAATGGAACAGGGAAAACTGCTGCCTTCTGCATTCCGGCATTGGAAAAAATTGAC
CAGGACGTCAATGCCATTCAAGTTGTTATCCTTGTTCCTACGCGAGAATTGGCTCTTCAA
ACATCTCAAGTTTGCAAAGAACTTGGGAAGCACTTAAAAATTGAAGTCATGGTTACCACT
GGGGGGACCAGCTTGAAGGATGATATAATGCGACTCTATCAACCGGTACATTTACTAGTT
GGAACCCCTGGAAGAATACTCGACCTTGCGAGAAAGGGAATATGTGTTTTGAAAGATTGT
TCCATGCTTGTCATGGATGAGGCTGATAAGCTTCTTTCTCCGGAGTTTCAACCTTCCATC
GTGCAGCTGATTCGTTTCTTGCCAGCAAATCGTCAAGTTTTAATGTTCTCAGCTACATTC
CCTGTCACAGTCAAGGACTTTAAAGAAAGATACTTGCAGAAGCCATATGTTATCAACCTT
ATGGATGAACTTACTCTCAAGGGTATAACTCAATTTTATGCCTTCGTAGAGGAAAGGCAG
AAGCTTCATTGCCTTAACACTTTATTCTCAAAGCTTCAAATCAACCAATCAATTATCTTT
TGCAACTCTGTAAACCGTGTGGAACTGCTTGCCAAGAAGATCACAGAATTAGGCTATTCA
TGCTTCTACATCCATGCAAAGATGCTTCAAGATCATAGGAACAGAGTATTTCATGACTTC
CGTAATGGTGCCTGCAGGAACCTTGTTTGTACTGATCTGTTTACTAGAGGGATAGATATT
CAAGCAGTCAATGTTGTTATAAATTTTGATTTCCCGAAGAACTCAGAGACATATTTACAC
AGGGTTGGGCGATCAGGGAGATTTGGGCATCTTGGTTTAGCTGTGAACCTGATTACTTAT
GAGGATCGCTTCAACCTGTACAGAATTGAACAAGAACTAGGAACAGAGATCAAGCAAATT
CCTCCGCACATAGATCAGGCTATATATTGCCTTTGA

Peptide Sequence

PEP ID

Solyc10g017530.3.1
PEP Infomation

RNA helicase DEAD33
Sequence

MNPRGRYPPPGMGSGGGGGGRGGGNMYPNANPNFQPRNPQQYVQRGPVNQQQQFQNQQAQ
QWLRRNQLASDSTVDEVEKTVQSEAVDQSSQDWKARLKIPPADTRYRTEDVTATKGNEFE
DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID
QDVNAIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLV
GTPGRILDLARKGICVLKDCSMLVMDEADKLLSPEFQPSIVQLIRFLPANRQVLMFSATF
PVTVKDFKERYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIF
CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI
QAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI
PPHIDQAIYCL*

Transcript Sequence

Transcript ID

Solyc10g017530.3.1
Transcript Infomation

RNA helicase DEAD33
Sequence

GGGTCGATTTGTTTTTACTTTTAATAGGAAGGATTATTTTGCAATATAAAAAGTATAGAT
CCTACACGAAACACCCAAATATTCAGCCCGTTCCATAAAATGGTATAAGTTAAAGTGACC
TCTCTGCAATTTAAACAAATTTGTTTTGCGCCCTAAGGCCCACCGTTTCTGCAATCATTT
CTCACATTTTCTTCACAACATCTTCAAAATTCTCTAAAATTTCTACCAAAAATTCTATAC
AATTTCTTCAAATTTGGTAGAACTTTTTTGTTTGTACATTTTTTTGTTAGATCGAATTTT
AAGCTTCAGATAATACTTTTGTGGACGGTTTTTGTTGCTCCAATTAGTATTATTCTTTAG
GGTTTTTGTTTTGAGATCCGGTTTATTTATTGGTTATGAATCCCAGAGGAAGATATCCAC
CGCCGGGAATGGGAAGCGGCGGCGGAGGCGGCGGACGCGGGGGCGGAAACATGTACCCTA
ACGCTAACCCTAATTTTCAACCGAGAAATCCACAGCAGTATGTGCAGAGAGGTCCGGTGA
ACCAGCAGCAGCAGTTTCAGAACCAACAGGCACAGCAATGGCTCAGAAGGAACCAGTTGG
CATCTGATTCTACGGTTGATGAGGTTGAAAAGACGGTACAATCTGAAGCAGTTGATCAAA
GTTCACAAGACTGGAAGGCGAGGTTGAAGATACCACCAGCGGATACTAGATACAGGACAG
AGGATGTGACAGCGACCAAGGGAAATGAATTTGAAGACTATTTTCTTAAGCGTGAATTGC
TTATGGGAATTTATGAAAAGGGTTTTGAAAGACCATCTCCAATCCAGGAAGAGAGTATCC
CAATTGCTCTTACTGGGAGTGATATTTTGGCGAGGGCCAAAAATGGAACAGGGAAAACTG
CTGCCTTCTGCATTCCGGCATTGGAAAAAATTGACCAGGACGTCAATGCCATTCAAGTTG
TTATCCTTGTTCCTACGCGAGAATTGGCTCTTCAAACATCTCAAGTTTGCAAAGAACTTG
GGAAGCACTTAAAAATTGAAGTCATGGTTACCACTGGGGGGACCAGCTTGAAGGATGATA
TAATGCGACTCTATCAACCGGTACATTTACTAGTTGGAACCCCTGGAAGAATACTCGACC
TTGCGAGAAAGGGAATATGTGTTTTGAAAGATTGTTCCATGCTTGTCATGGATGAGGCTG
ATAAGCTTCTTTCTCCGGAGTTTCAACCTTCCATCGTGCAGCTGATTCGTTTCTTGCCAG
CAAATCGTCAAGTTTTAATGTTCTCAGCTACATTCCCTGTCACAGTCAAGGACTTTAAAG
AAAGATACTTGCAGAAGCCATATGTTATCAACCTTATGGATGAACTTACTCTCAAGGGTA
TAACTCAATTTTATGCCTTCGTAGAGGAAAGGCAGAAGCTTCATTGCCTTAACACTTTAT
TCTCAAAGCTTCAAATCAACCAATCAATTATCTTTTGCAACTCTGTAAACCGTGTGGAAC
TGCTTGCCAAGAAGATCACAGAATTAGGCTATTCATGCTTCTACATCCATGCAAAGATGC
TTCAAGATCATAGGAACAGAGTATTTCATGACTTCCGTAATGGTGCCTGCAGGAACCTTG
TTTGTACTGATCTGTTTACTAGAGGGATAGATATTCAAGCAGTCAATGTTGTTATAAATT
TTGATTTCCCGAAGAACTCAGAGACATATTTACACAGGGTTGGGCGATCAGGGAGATTTG
GGCATCTTGGTTTAGCTGTGAACCTGATTACTTATGAGGATCGCTTCAACCTGTACAGAA
TTGAACAAGAACTAGGAACAGAGATCAAGCAAATTCCTCCGCACATAGATCAGGCTATAT
ATTGCCTTTGATCAGTTAGCTGCTCGGTTATGGTGCACCAATGGTGAGTCTTTTGTACAG
AAATCTCATGTTGAAGTTGTGCGATGCCTGTGATGCTGAGATAATGGATGACTTGGCTGT
TTCATGGTTGCCGAGATAACTGAGTTCATCTTTAGTTCTAGTGACGAGTTTTAAGTTAAT
CCTAAAAGACTTTAGCAGTACATACTGACAATGGATAGGTCCAGTCAGAGACTGACCGTT
GGTGAGTCCCCTGGTTAATGTAGTATTTGGCATTTGTCGCTGTTTCCTTTTCGGTTTATG
TCTGTTGGATAAGATGTACAAGGTTTTGCTCTATGGTATTCATCTGCGGCATATGGTGAT
GTGGGAGAATTGGTCATGGAGAAGTGATACCTAAAGATGTTAAGTGACGGAGTAGTCATT
TTTGTGCACTCATAGAGATTAATATCAGACGTTTCAACCAGTGTCTCAGTATGTGTACCA
GAAGCATTGTACTCCTTTCAGCTCTTATAGCTTTTTTCCTGTTATGTTGGTGTTTGGAAT
GATGAAGCAGGTTGTGTCTGCATGAATGTGAAGAGTATGGTTTTAATTTTATCTATTCTG
GATTTGAATAATTGAATCTTTCTCTGCCTTGTCTCTATTTAAGTTGTAGGGTTCTGTTTG
GCCGGAA