Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc10g011690.3.1
CDS Infomation	Ubiquitin ligase protein cop1, putative (AHRD V3.3 *** B9T343_RICCO)
Sequence	ATGGACAAGTCAAAGGAGGAAGCAGATGCAAATGATGTAGGTGCGAATGTGCTATCTAGA ACGAGGGAGTGTGATTCTGGTGAACCATCAATGGGGAAGTGTACATCTACCAGTCATGAG TTGCCAGAGGGATCAACTTCTGCCAGTTCAGGGATGTTGGAGAGTGATGGAATGAACAGA AATGTAACGTCCATGAAGGGGCCTCAGCTCCACGGTACAAGCTCTTACTCATTGAATAGT TCAAGGCTCACTCTTGAAAAGTTGTGTAGTTACAAAATTTCTGAGCCAGCTTCTCTTAGA TGCTCCAATAGTCAAAAAACCATTCAGAAACCACAAATTCAGTGGCAACGTTTCTATCAA TTGGGGTCTGGCTCTAGAAGTTTGAAGGGAGATGGAGATCCTTCATCCACGGACAAGGCT GTTCAGCAATTAAGTTCCAAGGAGTTGCCAAGAATAAATTTACTTGCGCTGAAAATGCTG AAGCAAGCATCCGACAAAGATATCAAAGGAGGCTCTAATGCAGAGTCTTCCCAATCAACA GAAGACCATAACCTAATTATTCCAAGAAATAGATTACTTCCGGGAAGTAGTCAATCAAAA CTTTTATCCACTTCTAGCTTTTCTCATTTTTTTGCTAACCGATCTCTTAAAACCAAAGAT GTTTTACCAAAAGGACCTGCACTTCATAAAGAAGTTCATATTGCCTCTACTCTGCAGAAT AAGAATGACTTCGAGCAAGCCTCCACAGGAATGGTATCATCTGATGTTTTTTTAAAGCAA GGTGCTAATTCTAATCAAGCATCTTTCAGTCGTAGCGATCACCAAAGACCCACTTCAACT TACAATGGATTTACCTTGAGAGAGTGGTTAAACTCGACGGGATCACAGATAAACAAAGCT GAGAGGATTCACATATTCCGGCAGATTGTGAAGTTAATTGATATTGCTCACTCTGAAGGA AATGCATTCCAGGATATACGGCCTTCCTGTTTCATTTTACTGTCACCTAATGGTGTTAAA TATATTGGTTCATCTGTCCAGATAGACTCCATGTATGCTGTGAGCCGGAATACTAATGGG AAAAGGCCATCCGACATGGAAATGCATGCTAATAGTAACTTGGGTATAAAGCTACAGAAG GTCAATGTGGACGTGGGCTTGATTAGACAGCAGCCTGAAAGCAATGCTCGTTCTTGTTCT CGTGATGAAGGCACATCATTTCAGGCAGGGTGTCTACTGGAGTCTGATATTAATCAATTA GAAAAGAAGTGGTACACTTGTCCTGAAGAACTCCATCACGAAAGCCTAGCATCGTCTAAT ATCTACAGTCTCGGGGTTCTTTTCTTTGAGTTGCTCTGCTGTTTCGAATCACCTGCAGCA CATTCCACAGCCATGTTGAATTTGCAAAGTCGCATTCTCCCTCCAAATTTCCTTTGTCAA AATCCCAAGGAAGTTGGCTTTTGCTTTTTGCTGCTTCATCCTGTGCCTTCTTCTCGTCCA ACAACAAGGGAAATCCTACAGTCTGAATTAATTATTGGAGCTGAAGAAGTATGTAAAATA GATGGTGTCCCATCATTCATTGAGAAGGATGATGACCCTGATTCAGACGTCTTGCTCTAT TTCCTAGTTTCACTGCAGGAGGAAAAACAGAATGATACCTCCAAGTTATTACAAAGAATA GAGTGCCTAGAGGCTGATATCAAGGATGTTGAGAAAAGGGAGGTCCTTAGACATTCAGAT TGGGTGGAAACTGACTTCAATAATATGCGGCAAGGATCCTACTTAAAACATCTCAATTCC GCTGACTCTATTTCTAGATCGTTTTCAATTCCAAATATGCGCAATGAAAAGCTGATGAAG AATATTTCTCAGCTTGAAAGTGCATACTTCTGCATGAGGTCCCAAATCCAACTTGCAGAA AATGATACAATAGGTCGAACAGACACGGATTTGTTGACGAGTCGTGACAGATTGTTCCAG GTTTCAGCAAAAGAGGCAGAGCCAATTTTAAAATCTGTTGATCGTGTTGGAGCCTTCTTT GAAGGTATTTGTAAATATGCTCGCTACTGCAAGTTTGAGGAATATGGGACATTAAGAAAT GGTGATCTTCTCAACTCTATAAACGTGATCTGCTCCCTCTGTTTTGATTATGAAGAGGAC TATATAGCTGCAGCTGGTGTCTCAAAGAAAATTAAAATCTTTGAATTTGCTTCACTTTTG AATGAATCTGCGGATCTTCAATATCCTGTGGCTGAGATGTCAAACATATCTAAGCTTAGC TGTGTTTCGTGGAATAAATATATGAGAAACTATCTGGCTTCAACTGACTATGATGGCGTA GTCAAGATGTGGGATGCAAGCACAGGTCAAGAATTTTCACAACATACAGAGCACCAGAAG AGGGCTTGGTCTGTTGATTTTTCTCAAGTGAATCCAACAAAGTTTGCCACTGGAAGTGAT GATTGTTCTGTAAAAGTGTGGAATATTAATGAGAGGAGTTCTGTGGATACGATCTGGAAT CCTGCCAACATATGCTGTGTGCAGTTTTCTGCTTACTCCTCTCATCTGTTGGCTTTCGGA TCTGCTGATTACAAAATTTACTGCTATGATCTTCGCCATACTAGGATTCCGTGGTGCACA TTAACTGGACATGAGAAGGCTGTTAGCTTTGTAAAATTCTTAGATTATGGTACCCTGGTT TCTGCATCCACAGATAACACGCTAAAGCTATGGGACCTAAAGAGAACAAGTTTGGAAGGA TTGTCCTCAAATGCTTGCAGCTTGACATTCAAGGGACACACCAATGAAAAGAACTTTGTG GGATTATCAGTTTTGGATGGGTACATTGCATGTGGTTCTGAATCTAATGAGGTATATGCT TATCATAGATCTCTACCAATGCCAATTACCTCTTATAAATTTGGATCTGTTGATCCTAGC TCTGGCAATGATGGTGAGAGTAATGGGAAATTTGTTTCAAGTGTTTGCTGGAGAAGAAAA TCTAATATGGTTGTTGCGGCAAACTCAACTGGATGTATAAAGCTGTTACGTTTGGTATGA

Peptide Sequence

PEP ID	Solyc10g011690.3.1
PEP Infomation	Ubiquitin ligase protein cop1, putative (AHRD V3.3 *** B9T343_RICCO)
Sequence	MDKSKEEADANDVGANVLSRTRECDSGEPSMGKCTSTSHELPEGSTSASSGMLESDGMNR NVTSMKGPQLHGTSSYSLNSSRLTLEKLCSYKISEPASLRCSNSQKTIQKPQIQWQRFYQ LGSGSRSLKGDGDPSSTDKAVQQLSSKELPRINLLALKMLKQASDKDIKGGSNAESSQST EDHNLIIPRNRLLPGSSQSKLLSTSSFSHFFANRSLKTKDVLPKGPALHKEVHIASTLQN KNDFEQASTGMVSSDVFLKQGANSNQASFSRSDHQRPTSTYNGFTLREWLNSTGSQINKA ERIHIFRQIVKLIDIAHSEGNAFQDIRPSCFILLSPNGVKYIGSSVQIDSMYAVSRNTNG KRPSDMEMHANSNLGIKLQKVNVDVGLIRQQPESNARSCSRDEGTSFQAGCLLESDINQL EKKWYTCPEELHHESLASSNIYSLGVLFFELLCCFESPAAHSTAMLNLQSRILPPNFLCQ NPKEVGFCFLLLHPVPSSRPTTREILQSELIIGAEEVCKIDGVPSFIEKDDDPDSDVLLY FLVSLQEEKQNDTSKLLQRIECLEADIKDVEKREVLRHSDWVETDFNNMRQGSYLKHLNS ADSISRSFSIPNMRNEKLMKNISQLESAYFCMRSQIQLAENDTIGRTDTDLLTSRDRLFQ VSAKEAEPILKSVDRVGAFFEGICKYARYCKFEEYGTLRNGDLLNSINVICSLCFDYEED YIAAAGVSKKIKIFEFASLLNESADLQYPVAEMSNISKLSCVSWNKYMRNYLASTDYDGV VKMWDASTGQEFSQHTEHQKRAWSVDFSQVNPTKFATGSDDCSVKVWNINERSSVDTIWN PANICCVQFSAYSSHLLAFGSADYKIYCYDLRHTRIPWCTLTGHEKAVSFVKFLDYGTLV SASTDNTLKLWDLKRTSLEGLSSNACSLTFKGHTNEKNFVGLSVLDGYIACGSESNEVYA YHRSLPMPITSYKFGSVDPSSGNDGESNGKFVSSVCWRRKSNMVVAANSTGCIKLLRLV*

Transcript Sequence

Transcript ID	Solyc10g011690.3.1
Transcript Infomation	Ubiquitin ligase protein cop1, putative (AHRD V3.3 *** B9T343_RICCO)
Sequence	AAAAGTAAAATATACCACTAGATGAACAATTTTTTTTAAAATAAAAAAATAACATATTTT TTTTTATTTCGTTAGAGGATAAAGGTATATAAGCACAGAGAAGTAAATGAATCACTTTCA TAAGAGGTTTTGTTTTTTCTTTTTTTTCAAATTTTATAAATTAATGGCCAAACAGCCCTT TAACAAAGCACAATTCCGGCGAAAACAATATCTGAATTGCTCCACTTTTCACAGACATCA TTTGGCGAAAACAATTTTTTTTTTCCAAGTGGGGTGACTGACTGATTCATAAATCATCAT ATCTATAGAGTAAATTAATGCACAAATAATTGCACAGTTGGGGTGTTGAACAAATGAAAA GTATTGTTTTTTTTTCAGAATCTTGAATAGTGATGAGTGAGCTAGACAGATTCTTGGAGA GACTACCCTTTTTTCCCCATTTCAGTTTCAGCTAGTCCTTCAAGGGGTAAACATAGGTGA ATGCAGCTGGTTATTTAATTGAAAGAGTCCTTTGGAATGATATGGACAAGTCAAAGGAGG AAGCAGATGCAAATGATGTAGGTGCGAATGTGCTATCTAGAACGAGGGAGTGTGATTCTG GTGAACCATCAATGGGGAAGTGTACATCTACCAGTCATGAGTTGCCAGAGGGATCAACTT CTGCCAGTTCAGGGATGTTGGAGAGTGATGGAATGAACAGAAATGTAACGTCCATGAAGG GGCCTCAGCTCCACGGTACAAGCTCTTACTCATTGAATAGTTCAAGGCTCACTCTTGAAA AGTTGTGTAGTTACAAAATTTCTGAGCCAGCTTCTCTTAGATGCTCCAATAGTCAAAAAA CCATTCAGAAACCACAAATTCAGTGGCAACGTTTCTATCAATTGGGGTCTGGCTCTAGAA GTTTGAAGGGAGATGGAGATCCTTCATCCACGGACAAGGCTGTTCAGCAATTAAGTTCCA AGGAGTTGCCAAGAATAAATTTACTTGCGCTGAAAATGCTGAAGCAAGCATCCGACAAAG ATATCAAAGGAGGCTCTAATGCAGAGTCTTCCCAATCAACAGAAGACCATAACCTAATTA TTCCAAGAAATAGATTACTTCCGGGAAGTAGTCAATCAAAACTTTTATCCACTTCTAGCT TTTCTCATTTTTTTGCTAACCGATCTCTTAAAACCAAAGATGTTTTACCAAAAGGACCTG CACTTCATAAAGAAGTTCATATTGCCTCTACTCTGCAGAATAAGAATGACTTCGAGCAAG CCTCCACAGGAATGGTATCATCTGATGTTTTTTTAAAGCAAGGTGCTAATTCTAATCAAG CATCTTTCAGTCGTAGCGATCACCAAAGACCCACTTCAACTTACAATGGATTTACCTTGA GAGAGTGGTTAAACTCGACGGGATCACAGATAAACAAAGCTGAGAGGATTCACATATTCC GGCAGATTGTGAAGTTAATTGATATTGCTCACTCTGAAGGAAATGCATTCCAGGATATAC GGCCTTCCTGTTTCATTTTACTGTCACCTAATGGTGTTAAATATATTGGTTCATCTGTCC AGATAGACTCCATGTATGCTGTGAGCCGGAATACTAATGGGAAAAGGCCATCCGACATGG AAATGCATGCTAATAGTAACTTGGGTATAAAGCTACAGAAGGTCAATGTGGACGTGGGCT TGATTAGACAGCAGCCTGAAAGCAATGCTCGTTCTTGTTCTCGTGATGAAGGCACATCAT TTCAGGCAGGGTGTCTACTGGAGTCTGATATTAATCAATTAGAAAAGAAGTGGTACACTT GTCCTGAAGAACTCCATCACGAAAGCCTAGCATCGTCTAATATCTACAGTCTCGGGGTTC TTTTCTTTGAGTTGCTCTGCTGTTTCGAATCACCTGCAGCACATTCCACAGCCATGTTGA ATTTGCAAAGTCGCATTCTCCCTCCAAATTTCCTTTGTCAAAATCCCAAGGAAGTTGGCT TTTGCTTTTTGCTGCTTCATCCTGTGCCTTCTTCTCGTCCAACAACAAGGGAAATCCTAC AGTCTGAATTAATTATTGGAGCTGAAGAAGTATGTAAAATAGATGGTGTCCCATCATTCA TTGAGAAGGATGATGACCCTGATTCAGACGTCTTGCTCTATTTCCTAGTTTCACTGCAGG AGGAAAAACAGAATGATACCTCCAAGTTATTACAAAGAATAGAGTGCCTAGAGGCTGATA TCAAGGATGTTGAGAAAAGGGAGGTCCTTAGACATTCAGATTGGGTGGAAACTGACTTCA ATAATATGCGGCAAGGATCCTACTTAAAACATCTCAATTCCGCTGACTCTATTTCTAGAT CGTTTTCAATTCCAAATATGCGCAATGAAAAGCTGATGAAGAATATTTCTCAGCTTGAAA GTGCATACTTCTGCATGAGGTCCCAAATCCAACTTGCAGAAAATGATACAATAGGTCGAA CAGACACGGATTTGTTGACGAGTCGTGACAGATTGTTCCAGGTTTCAGCAAAAGAGGCAG AGCCAATTTTAAAATCTGTTGATCGTGTTGGAGCCTTCTTTGAAGGTATTTGTAAATATG CTCGCTACTGCAAGTTTGAGGAATATGGGACATTAAGAAATGGTGATCTTCTCAACTCTA TAAACGTGATCTGCTCCCTCTGTTTTGATTATGAAGAGGACTATATAGCTGCAGCTGGTG TCTCAAAGAAAATTAAAATCTTTGAATTTGCTTCACTTTTGAATGAATCTGCGGATCTTC AATATCCTGTGGCTGAGATGTCAAACATATCTAAGCTTAGCTGTGTTTCGTGGAATAAAT ATATGAGAAACTATCTGGCTTCAACTGACTATGATGGCGTAGTCAAGATGTGGGATGCAA GCACAGGTCAAGAATTTTCACAACATACAGAGCACCAGAAGAGGGCTTGGTCTGTTGATT TTTCTCAAGTGAATCCAACAAAGTTTGCCACTGGAAGTGATGATTGTTCTGTAAAAGTGT GGAATATTAATGAGAGGAGTTCTGTGGATACGATCTGGAATCCTGCCAACATATGCTGTG TGCAGTTTTCTGCTTACTCCTCTCATCTGTTGGCTTTCGGATCTGCTGATTACAAAATTT ACTGCTATGATCTTCGCCATACTAGGATTCCGTGGTGCACATTAACTGGACATGAGAAGG CTGTTAGCTTTGTAAAATTCTTAGATTATGGTACCCTGGTTTCTGCATCCACAGATAACA CGCTAAAGCTATGGGACCTAAAGAGAACAAGTTTGGAAGGATTGTCCTCAAATGCTTGCA GCTTGACATTCAAGGGACACACCAATGAAAAGAACTTTGTGGGATTATCAGTTTTGGATG GGTACATTGCATGTGGTTCTGAATCTAATGAGGTATATGCTTATCATAGATCTCTACCAA TGCCAATTACCTCTTATAAATTTGGATCTGTTGATCCTAGCTCTGGCAATGATGGTGAGA GTAATGGGAAATTTGTTTCAAGTGTTTGCTGGAGAAGAAAATCTAATATGGTTGTTGCGG CAAACTCAACTGGATGTATAAAGCTGTTACGTTTGGTATGA