Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g008560.3.1
CDS Infomation

UPF0420 C16orf58-like protein (AHRD V3.3 *** A0A072UUJ6_MEDTR)
Sequence

ATGAAGCTTAAACCACCTCCGAATTCTTCTTCTTCATCATCTCAGACGCTAACAGCAACG
GATGCTAAATTACTTGTTCGTGAAACCCTCCGTATTAGTGCTGATCTTGCTTCTTCTCCA
TATGTGACGTCGGTTGGTTCAGTACCGGAAAATGCTAGTTTTGGAGTGGTAGATCGGGAA
TTTGTTGATTCGAGTTTGAGATTGCTTTGTTGTGAAGAGATCGATGGTCGTAGATGGAAG
TATTTTGCTGATGAGAGTGTAGGTTCTGAACAATTGAACTTGAAGAAGAAGAAGAAGAAT
GCGATTCGTGCTGTTAGTTTGCACTCTCCACAAGCTCCTGCTGAGGAGTTCATGTCATTC
ATACGATCCTATGTGGTTCCAGAAGGTTTTCCTGACAGTGTTACACCTTCTTATGTACCA
TACATGACATGGAGGGCACTAAAGCACTTCTTTGGTGGTGCAATGGGAGTTTTTACGACG
CAAACACTCTTAAATTCAGTAGGAGTCTCCAAACATAGAACTACCCCTGGTGCTGTAGCC
ATTAACTGGATTCTCAAGGATGGTGCTGGTCGGGTGGGGAAGATGCTTTATGCACGGCAG
GGAAAGAAATTCGATTATGATCTAAAACAGCTAAGGTTCGCGGGTGATCTTCTGATGGAG
TTAGGAGCTGGTGTTGAACTGGTAACTGCTGTCGTGCCACAGTTTTTTCTTCCTTTAGCC
TGTGCTGCGAATGTCGCAAAGAATGTAGGTGCTGTCACTTCTACTTCAACTCGTACTCCT
ATATATAAGGCCTTCGCTAAAGGGGAAAATATTGGGGATGTAACAGCTAAGGGGGAATGT
GTTGGAAATCTTGCTGATTTACTTGGGACAGGATTAAGTATCTTGATTTCCAAAAGGAAT
CCATCCTTGGTCAAGACATTTGCATTCCTCTCATTTGGATATGTCTTCAGCTCTTACCGA
GAGGTGAAATCTGTTGTGCTGCATACCCTGAACCGTGCAAGATTTACAGTAGCAGTAGAA
TCTTTCCTAAGGACAGGGAGAGTTCCAACACTGCAGGACGGAAATTCAAGGGAAGACATA
TTTAATTTTCCATGGAGACAGCACAGGCCTATTGTTCTTGGACCCAGATTTAAAGAAGCT
TTCCAAGATCCAAACTCATATCTTTCTGTCAAGCCCATATTTGAGAAGGAGCATTATATA
GTGACATACAATCCTTCCAAAGAAAACATATATGTGCTGCTCAAAGACCAAGCCAAGTCT
GATGATGTACTGAAAGCAGCATTTCATGGCCATGTGCTTCTGCACATCATTCGTTCATGC
ACCAACAAACAGTCTTCCTCCAGGAAGCAACATGAAGATGAACATTCAGCATCCTTGCTA
TCAACTGCTGATCTTCAAGCTTATGTTGCAGAATCTTATAAAATGGTCTCTGCTTTATAT
ATACCTTTCAAGAGCAAAGCTAAAGAACAGGGTTGGGTGATGTCGGAATCACTACTTAAT
CCTGGCCGAGCTCGGCTTTGTGAAATGACCACACATGATACATAG

Peptide Sequence

PEP ID

Solyc10g008560.3.1
PEP Infomation

UPF0420 C16orf58-like protein (AHRD V3.3 *** A0A072UUJ6_MEDTR)
Sequence

MKLKPPPNSSSSSSQTLTATDAKLLVRETLRISADLASSPYVTSVGSVPENASFGVVDRE
FVDSSLRLLCCEEIDGRRWKYFADESVGSEQLNLKKKKKNAIRAVSLHSPQAPAEEFMSF
IRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSKHRTTPGAVA
INWILKDGAGRVGKMLYARQGKKFDYDLKQLRFAGDLLMELGAGVELVTAVVPQFFLPLA
CAANVAKNVGAVTSTSTRTPIYKAFAKGENIGDVTAKGECVGNLADLLGTGLSILISKRN
PSLVKTFAFLSFGYVFSSYREVKSVVLHTLNRARFTVAVESFLRTGRVPTLQDGNSREDI
FNFPWRQHRPIVLGPRFKEAFQDPNSYLSVKPIFEKEHYIVTYNPSKENIYVLLKDQAKS
DDVLKAAFHGHVLLHIIRSCTNKQSSSRKQHEDEHSASLLSTADLQAYVAESYKMVSALY
IPFKSKAKEQGWVMSESLLNPGRARLCEMTTHDT*

Transcript Sequence

Transcript ID

Solyc10g008560.3.1
Transcript Infomation

UPF0420 C16orf58-like protein (AHRD V3.3 *** A0A072UUJ6_MEDTR)
Sequence

TACACAGAACTTAAATTTTTTATAAATAGTAAAAATAAAAATAGTTCAATAATACAACGA
AATGAGAAAAAACTCACCCAGTATCCAAAATCCATACTTATTCAAGGATAGCACTTCTAA
CATGATTTTTTGTTTCATACGAAATTAAAAAAACAGTCTCATCACTCCACCACAATCGAT
ATTGATAGAATAAAATTATATTGGACGGAGCAAAATAGGTTCAAATTGACTAAACCCATT
TTATGCCGGTCCTACCCCGTCCTATTGTCATCCCGACTCCATAGGGGTCCCACCTTCTTT
ATCCCAAAATATTAGTGAGTAATGCAAACGACGTACGCCTCTTAAAAAAAATTAACTTTT
CTGTGTTCCACATGTCCCACCACTTTTTCCTCTTAATCTCCGTTTTCGACATTACCAAAG
CTCCGAATTTTCCTTCATGAAAACTTGGTTAATCTGAGATTCTCCTCTTCCATAACCAAA
AAGTATAACAATGAAGCTTAAACCACCTCCGAATTCTTCTTCTTCATCATCTCAGACGCT
AACAGCAACGGATGCTAAATTACTTGTTCGTGAAACCCTCCGTATTAGTGCTGATCTTGC
TTCTTCTCCATATGTGACGTCGGTTGGTTCAGTACCGGAAAATGCTAGTTTTGGAGTGGT
AGATCGGGAATTTGTTGATTCGAGTTTGAGATTGCTTTGTTGTGAAGAGATCGATGGTCG
TAGATGGAAGTATTTTGCTGATGAGAGTGTAGGTTCTGAACAATTGAACTTGAAGAAGAA
GAAGAAGAATGCGATTCGTGCTGTTAGTTTGCACTCTCCACAAGCTCCTGCTGAGGAGTT
CATGTCATTCATACGATCCTATGTGGTTCCAGAAGGTTTTCCTGACAGTGTTACACCTTC
TTATGTACCATACATGACATGGAGGGCACTAAAGCACTTCTTTGGTGGTGCAATGGGAGT
TTTTACGACGCAAACACTCTTAAATTCAGTAGGAGTCTCCAAACATAGAACTACCCCTGG
TGCTGTAGCCATTAACTGGATTCTCAAGGATGGTGCTGGTCGGGTGGGGAAGATGCTTTA
TGCACGGCAGGGAAAGAAATTCGATTATGATCTAAAACAGCTAAGGTTCGCGGGTGATCT
TCTGATGGAGTTAGGAGCTGGTGTTGAACTGGTAACTGCTGTCGTGCCACAGTTTTTTCT
TCCTTTAGCCTGTGCTGCGAATGTCGCAAAGAATGTAGGTGCTGTCACTTCTACTTCAAC
TCGTACTCCTATATATAAGGCCTTCGCTAAAGGGGAAAATATTGGGGATGTAACAGCTAA
GGGGGAATGTGTTGGAAATCTTGCTGATTTACTTGGGACAGGATTAAGTATCTTGATTTC
CAAAAGGAATCCATCCTTGGTCAAGACATTTGCATTCCTCTCATTTGGATATGTCTTCAG
CTCTTACCGAGAGGTGAAATCTGTTGTGCTGCATACCCTGAACCGTGCAAGATTTACAGT
AGCAGTAGAATCTTTCCTAAGGACAGGGAGAGTTCCAACACTGCAGGACGGAAATTCAAG
GGAAGACATATTTAATTTTCCATGGAGACAGCACAGGCCTATTGTTCTTGGACCCAGATT
TAAAGAAGCTTTCCAAGATCCAAACTCATATCTTTCTGTCAAGCCCATATTTGAGAAGGA
GCATTATATAGTGACATACAATCCTTCCAAAGAAAACATATATGTGCTGCTCAAAGACCA
AGCCAAGTCTGATGATGTACTGAAAGCAGCATTTCATGGCCATGTGCTTCTGCACATCAT
TCGTTCATGCACCAACAAACAGTCTTCCTCCAGGAAGCAACATGAAGATGAACATTCAGC
ATCCTTGCTATCAACTGCTGATCTTCAAGCTTATGTTGCAGAATCTTATAAAATGGTCTC
TGCTTTATATATACCTTTCAAGAGCAAAGCTAAAGAACAGGGTTGGGTGATGTCGGAATC
ACTACTTAATCCTGGCCGAGCTCGGCTTTGTGAAATGACCACACATGATACATAGCTGTT
GGAGTTGGTTGCAGAGGAACTACAAATAAATTTGTTTACTGAAACAATTATTTTGCATGG
CGCCCGCCAGTGATGGGCATTGCAAGAGGTTTGTGCATCTATAGTGAAATGAGGTCAGAG
ATCTGAAGTAACTACCGGATATTTATCCTCATTGCAACTCACTACATGTTCTTTCGACTT
TTTAGTACGATGGTTTACCTGTGCATCAGCATGTAGCTATTAGCGTAAGCAAGAAAGGTG
CATTCCGCGAAAGAGATTTCAGTATACTTGTTTATTCTGCCATAGTCTTTTCTTCTTTCT
TGCATATATATTTTCAGGGGGAGGCGGGTTCCCCTGCCGTTGAGATACGCTTCTACCCCC
AGTTTCCTGTTTTTCATACTTTTTTTAGCTAAATGTAATGCAATATCTTCATCTGGTGTT
CCTTTTTGCTTTTCAATTATGGAAGAAGAAGCAAACATGAGGAAAATGCTACACACAAGT
ACCCTCTAAACCCAAATAAAGGATGATG