Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g008490.3.1
CDS Infomation

Phosphatase 2C family protein (AHRD V3.3 *** U5FGH9_POPTR)
Sequence

ATGGGAGGTTGTGTATCGACGAGCAGTAGTACTTGTAGTAGCAGGAGCAATGGAGAAAAA
GTCTCACCTGAATGTTTAGGAATAAACATGTTTAGTCGAAAAAAGAGTAGAAGAACTTTT
TCTGATCATGTCATTGCATTGAAGCATCTAAGTTCAATTCCTAATCGGATCTTTACTAAT
GGCAAGAGTCGTACTTCTTGCATATACACACAACAAGGACGTAAAGGCATTAATCAGGAC
GCGATGATTGTCTGGGAAGATTTCATGGCGGAAGATGTGACCTTTTGTGGTGTATTTGAT
GGTCATGGTCCACATGGTCATCTTGTTGCTCGTAAAGTAAGGGATGTACTGCCCCTGAAG
TTAATGTCCTTTTTGCAATCAGTTGAATCAAAGGGTAATGGTTCTGCTGCAGATTGCAGC
AACGAGAATCCTGAATCGGAAGTTTTGGATCCTGATAAGGATCAAGTGAACCTGGATACT
CAGCGGAGAGAAGCGTTTCTTCAATCTTATAAGGCAATGGACAAAGAATTGAGGTCCCAA
CCTAACTTAGATTGCTTTTGCAGTGGTAGTACTGCTATTACTCTAGTAAAACAGGGTTCA
AATCTTTACATGGGCTATATTGGTGATTCACGCGCAATCTTGGCATCAAAGGATGACAAT
GATTCAATGGTCGCAGTCCAGTTAACTGTTGATCTGAAGCCTGATTTACCTAAGGAAGCT
GAGAGGATAAAACAGTGTAAAGGTCGGGTTTTTGCATTGCAAGATGAGCCGGAAGTGCAG
AGAGTTTGGTTGCCATTTGATAATGCCCCTGGATTAGCAATGGCTCGAGCATTTGGTGAT
TTTTGTGTGAAGGACTATGGGGTAATATCTGTACCAGAATTTTCTCACCGAGTTCTTACA
GAGAGGGACAAGTTCATTGTTCTTGCTTCTGACGGGGTTTGGGATGTCTTGAGCAATGAG
GAAGTGGTTGACATAGTGTCATCAGCGTCTACACGATCATCAGCTGCTAGAATCCTAGTT
GACTCTGCTGCACGCGAATGGAAAATTAAGTACCCGACTTCAAAAATGGATGATTGTGCT
GTTGTTTGCTTATTCTTGGATGGAAAGATGGACTTGGAATCTGACAATGAGGAGGAGCAA
TGTCTCACTTCTGCTGCACTTCAGAGTAACCATTCTGGTATTGCTGCTGAATCCGATGAC
GGGCACAACTCTGAGCCATCTCTACAGAGAAACACTACTGTCAGATCAGCTGAAGAGAGC
GATATCTATAAACGAGTAATAGCTGAAGCAGAAGCAGATCAAGAAACCACAATGACAGAA
GATCAGAAATGGTCAGGATTGGAAGGCGTTACGCGAGTTAACTCTCTGGTTCAGCTTCCA
AGATTTTCTGATGAGAGGCAAGGACCTTAA

Peptide Sequence

PEP ID

Solyc10g008490.3.1
PEP Infomation

Phosphatase 2C family protein (AHRD V3.3 *** U5FGH9_POPTR)
Sequence

MGGCVSTSSSTCSSRSNGEKVSPECLGINMFSRKKSRRTFSDHVIALKHLSSIPNRIFTN
GKSRTSCIYTQQGRKGINQDAMIVWEDFMAEDVTFCGVFDGHGPHGHLVARKVRDVLPLK
LMSFLQSVESKGNGSAADCSNENPESEVLDPDKDQVNLDTQRREAFLQSYKAMDKELRSQ
PNLDCFCSGSTAITLVKQGSNLYMGYIGDSRAILASKDDNDSMVAVQLTVDLKPDLPKEA
ERIKQCKGRVFALQDEPEVQRVWLPFDNAPGLAMARAFGDFCVKDYGVISVPEFSHRVLT
ERDKFIVLASDGVWDVLSNEEVVDIVSSASTRSSAARILVDSAAREWKIKYPTSKMDDCA
VVCLFLDGKMDLESDNEEEQCLTSAALQSNHSGIAAESDDGHNSEPSLQRNTTVRSAEES
DIYKRVIAEAEADQETTMTEDQKWSGLEGVTRVNSLVQLPRFSDERQGP*

Transcript Sequence

Transcript ID

Solyc10g008490.3.1
Transcript Infomation

Phosphatase 2C family protein (AHRD V3.3 *** U5FGH9_POPTR)
Sequence

TTTGAGAGTAGTTCTGGGGTTTGTGGTTGGACAACAATATACTTGTGAATTGGACCCCAA
AAATAATAGAACACTTGTCAATTGGACCCAAAAAATTAAATATATACTTTTGAAGGTCAT
TATTATTGCATGACTAAATTAACTCACATATCCATTTGATAATTTGACTTCCATAAGAAA
TACAATACATGAGTAATAGTCGTGTATTTTATAGCCTCGTGATCAATGTAATAGTTGAAA
ATTATAAAGTTTGCAGACAGAATAAATCTTACAATGCGTGAAGTAATAATAAATTTTATA
GCCTCGAGATCAATGTAACAGTTGAAAATTATGAAGTTTGCAGATAGAATAAATCTTACA
ATGTGTGAAGTAATAGTCATGTATTTTATAGCCTCGTGATCAATATAATAATTGAAAATT
ATGAGATTTGCAGACAGAATAAATCTTACAAGGCGTGAAGTAATAGTAATGTATTTTATA
GGCCTCGTGATCAATGGAACAGTTGAAAATTATGAAGTTTGCTGACAGAATAAATCTTAC
AATGCGTGAAGTAATAGTCATGTATTTTATAGCCTCGTGATCAATATAATAGTTGGAAAT
TATGAGATTTGCAGACAGAATAAATCTTACAATGCATGAAGTAATAGTAATGTATTTTAT
AGGCCTCGTGATCAATGTAATAGTTGAAAATTATGAGGTTTGGAAACAGAATAAATCTTA
CAACGCGTGAATTTAAATTTTTTTAATTATGGTTTTAAAAAATATAAGATTGATGCTGGA
AAGTGAAAAAGAAAAATTGAGAGCTAAAAATGTCTCCTACTTTGTGCTTGTACAATTAAT
GTGCCAGCTCTCTTGCTTCTTACTATTATATTATTTTTGTTCCCTATTTTTTCTTAAAAT
TTTTTTAAAAAGAAAAAAGAGAGAGAGAGAGAGAATTCATATACTAATTGGAAGTGAATT
GTTGAATCCTAACAAGTTGAAAAGCTTGTTTTTCAGTTGACTGAATTGATATTTGACTAA
AGGATAAAGAGAGCTTAGTCATTTCAACATTGGTTTGCTTTGCTTGATCATAAATCTGAT
CTGTGCATCCTGTGAGATCCATTTTATTAGCTTTGCTGTCAATCAGATGGTTGTTTTGTC
AGTCTGAGCATAATGGGAGGTTGTGTATCGACGAGCAGTAGTACTTGTAGTAGCAGGAGC
AATGGAGAAAAAGTCTCACCTGAATGTTTAGGAATAAACATGTTTAGTCGAAAAAAGAGT
AGAAGAACTTTTTCTGATCATGTCATTGCATTGAAGCATCTAAGTTCAATTCCTAATCGG
ATCTTTACTAATGGCAAGAGTCGTACTTCTTGCATATACACACAACAAGGACGTAAAGGC
ATTAATCAGGACGCGATGATTGTCTGGGAAGATTTCATGGCGGAAGATGTGACCTTTTGT
GGTGTATTTGATGGTCATGGTCCACATGGTCATCTTGTTGCTCGTAAAGTAAGGGATGTA
CTGCCCCTGAAGTTAATGTCCTTTTTGCAATCAGTTGAATCAAAGGGTAATGGTTCTGCT
GCAGATTGCAGCAACGAGAATCCTGAATCGGAAGTTTTGGATCCTGATAAGGATCAAGTG
AACCTGGATACTCAGCGGAGAGAAGCGTTTCTTCAATCTTATAAGGCAATGGACAAAGAA
TTGAGGTCCCAACCTAACTTAGATTGCTTTTGCAGTGGTAGTACTGCTATTACTCTAGTA
AAACAGGGTTCAAATCTTTACATGGGCTATATTGGTGATTCACGCGCAATCTTGGCATCA
AAGGATGACAATGATTCAATGGTCGCAGTCCAGTTAACTGTTGATCTGAAGCCTGATTTA
CCTAAGGAAGCTGAGAGGATAAAACAGTGTAAAGGTCGGGTTTTTGCATTGCAAGATGAG
CCGGAAGTGCAGAGAGTTTGGTTGCCATTTGATAATGCCCCTGGATTAGCAATGGCTCGA
GCATTTGGTGATTTTTGTGTGAAGGACTATGGGGTAATATCTGTACCAGAATTTTCTCAC
CGAGTTCTTACAGAGAGGGACAAGTTCATTGTTCTTGCTTCTGACGGGGTTTGGGATGTC
TTGAGCAATGAGGAAGTGGTTGACATAGTGTCATCAGCGTCTACACGATCATCAGCTGCT
AGAATCCTAGTTGACTCTGCTGCACGCGAATGGAAAATTAAGTACCCGACTTCAAAAATG
GATGATTGTGCTGTTGTTTGCTTATTCTTGGATGGAAAGATGGACTTGGAATCTGACAAT
GAGGAGGAGCAATGTCTCACTTCTGCTGCACTTCAGAGTAACCATTCTGGTATTGCTGCT
GAATCCGATGACGGGCACAACTCTGAGCCATCTCTACAGAGAAACACTACTGTCAGATCA
GCTGAAGAGAGCGATATCTATAAACGAGTAATAGCTGAAGCAGAAGCAGATCAAGAAACC
ACAATGACAGAAGATCAGAAATGGTCAGGATTGGAAGGCGTTACGCGAGTTAACTCTCTG
GTTCAGCTTCCAAGATTTTCTGATGAGAGGCAAGGACCTTAACTTTGTGTTGTTCAATTA
TGATTGTTGTTATATACAAATTCTTTCATCAATAGAGAGAGTAGCATTGGTTCCATCATC
TACATTCCAAGCAAATGTATTCTTGCTGC