Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g008340.3.1
CDS Infomation

Structural constituent of cell wall, putative (AHRD V3.3 *** B9RVZ9_RICCO)
Sequence

ATGGCGTCTGGATCATCTGGTAGGCCGAGTAATTCTTCGGGTTCGAAGGGTTTTGATTTT
GGGTCTGATGATATTCTCTGTTCTTATGAAGATTATCCACATCAAGATGCCTCCAATGGA
ACCCTCTCTGATCCTGCGATTGCTACCAGTTCTGCTAAGCTTCTTTTGTACTCTTTGCGT
CTTCTTGATGAGTTTCACAAAAACAGAATGACAAGATCATCAATGTTTCCCACTTCGACG
TATAGCCCTCCAGAGGAATCTTCCTTCAATCAAGACATGATATGTACTGTTGAGAAGACC
ATGAAAAAATATACGGATAATCTCATGAGATTTCTAGAGGGTATCAGTTCACGCTTGTCG
CAGTTGGAACTGTACTGTTACAACCTTGATAAGTCCATTGGGGAAATGCGGTCTGATTTA
GTTCGAGATCATGGTGAGGCAGATTTGAAACTGAAGGCTCTTGAGAAGCATGTTCAAGAG
GTCCACAGATCTGTACAGATTCTGAGAGATAAGCAAGAACTTGCTGAAACTCAGAAGGAG
CTGGCTAAGCTTCAGTTTGCGCCGAAAGAACCAGCTTCAGCTAACAATTCTCAGCAGAAT
GAGGACAGAAATGCTCAACCTGTATCTGATTCCAATAAAGGTGACAACTCAACTGATGTG
AATGGACAACAACTGGCACTTGCTCTACCGCATCAAGTAGCACCCCGGGCTCCTCTTACT
AACCAACCCGTCGAACAGCCACAACAGGCACCTCCACCACCAATTCCATCTCAAAGTATG
ACGCAGTCGCAAGGTTACTATTTACCCCCAGTGCAGATGTCAAATCCACCAGCTCCAACT
CACTTGTCCCAAGGTCAATATCTTTCATCTGACCCCCAGTATCGTACTTCTCAAATGCAA
GATCTTTCTAGGTTACCACCCCAGCCAGCAGCACCTCCGGGGAATCAGACCCCACAAATC
CAGTCAATGCCCCAATATCAGCAGCAGCAATGGGCGCAACAGGTACCTCAGCAGGTTCAA
GCATCCCAGCAGCATCAGCTTCCAAGTGTGCAACAGCAAGCTAGACCCTCATCACCTGCT
GTTTATCCTTCTTATCCACCCAGTCAACCGAATTCTTCTCCTGAACCTGTCCCCAATAGC
ATGCCAATGCAAGTGTCATTTTCCACGATCCCTCAATCAGTTTCAAGCCGTCCAGAAGCA
ATACCCTATGGGTATGATAGGTCTGGCAGGCCACTTCAGTCACAGCCTCCAACCCAGCAT
CTCAAGCCTTCTTTTGGTGCTCCAGGGGATGGGTATGCCGCTAGTGGGCCTCATCCATCT
CTTTCTGCAGGAAATGCATATTTGATGTACGACAGTGAAGGCCCAAGGGGACATCCACCA
CAACCACCAAATTTCCCACAAAGTGGTTATCCTCCCTCCAGCTTCCCTCCCCAGAACGCA
CAGTCCTCCCCGAGCCCCAATCATATGTTTCGTCCACCTCAATTGATGCGCACTCATCCT
TACAATGAATTAATTGAGAAGCTGGCAAGCATGGGCTACAGGGGTGATCATGTGGTTAAT
GTTATCCAAAGGCTCGAAGAAAGTGGTCAGACAGTTGATTTCAATACTGTGCTCGACAGG
CTGAATGGACATTCTTCAGGTGGTCCTCAGAGAGGATGGTCGGGTTAG

Peptide Sequence

PEP ID

Solyc10g008340.3.1
PEP Infomation

Structural constituent of cell wall, putative (AHRD V3.3 *** B9RVZ9_RICCO)
Sequence

MASGSSGRPSNSSGSKGFDFGSDDILCSYEDYPHQDASNGTLSDPAIATSSAKLLLYSLR
LLDEFHKNRMTRSSMFPTSTYSPPEESSFNQDMICTVEKTMKKYTDNLMRFLEGISSRLS
QLELYCYNLDKSIGEMRSDLVRDHGEADLKLKALEKHVQEVHRSVQILRDKQELAETQKE
LAKLQFAPKEPASANNSQQNEDRNAQPVSDSNKGDNSTDVNGQQLALALPHQVAPRAPLT
NQPVEQPQQAPPPPIPSQSMTQSQGYYLPPVQMSNPPAPTHLSQGQYLSSDPQYRTSQMQ
DLSRLPPQPAAPPGNQTPQIQSMPQYQQQQWAQQVPQQVQASQQHQLPSVQQQARPSSPA
VYPSYPPSQPNSSPEPVPNSMPMQVSFSTIPQSVSSRPEAIPYGYDRSGRPLQSQPPTQH
LKPSFGAPGDGYAASGPHPSLSAGNAYLMYDSEGPRGHPPQPPNFPQSGYPPSSFPPQNA
QSSPSPNHMFRPPQLMRTHPYNELIEKLASMGYRGDHVVNVIQRLEESGQTVDFNTVLDR
LNGHSSGGPQRGWSG*

Transcript Sequence

Transcript ID

Solyc10g008340.3.1
Transcript Infomation

Structural constituent of cell wall, putative (AHRD V3.3 *** B9RVZ9_RICCO)
Sequence

AAATAAACACAAATCATTTTGCATGTCAAAAAAATTAATAATATAATTTTCAAAATTTTT
TTTCCTTTCTCTCTCTATATAAACAACATAATCCTTTTCTCCAGTTTCTCTCTCTATATA
TATTATACACACAAAACCTAGAAGATAATTTTTTCTCTTCGTTTGTTTGATCAGTAAAAG
TGAAAACCCTAGTTTTGTGATCCGTGAAGTATGGCGTCTGGATCATCTGGTAGGCCGAGT
AATTCTTCGGGTTCGAAGGGTTTTGATTTTGGGTCTGATGATATTCTCTGTTCTTATGAA
GATTATCCACATCAAGATGCCTCCAATGGAACCCTCTCTGATCCTGCGATTGCTACCAGT
TCTGCTAAGCTTCTTTTGTACTCTTTGCGTCTTCTTGATGAGTTTCACAAAAACAGAATG
ACAAGATCATCAATGTTTCCCACTTCGACGTATAGCCCTCCAGAGGAATCTTCCTTCAAT
CAAGACATGATATGTACTGTTGAGAAGACCATGAAAAAATATACGGATAATCTCATGAGA
TTTCTAGAGGGTATCAGTTCACGCTTGTCGCAGTTGGAACTGTACTGTTACAACCTTGAT
AAGTCCATTGGGGAAATGCGGTCTGATTTAGTTCGAGATCATGGTGAGGCAGATTTGAAA
CTGAAGGCTCTTGAGAAGCATGTTCAAGAGGTCCACAGATCTGTACAGATTCTGAGAGAT
AAGCAAGAACTTGCTGAAACTCAGAAGGAGCTGGCTAAGCTTCAGTTTGCGCCGAAAGAA
CCAGCTTCAGCTAACAATTCTCAGCAGAATGAGGACAGAAATGCTCAACCTGTATCTGAT
TCCAATAAAGGTGACAACTCAACTGATGTGAATGGACAACAACTGGCACTTGCTCTACCG
CATCAAGTAGCACCCCGGGCTCCTCTTACTAACCAACCCGTCGAACAGCCACAACAGGCA
CCTCCACCACCAATTCCATCTCAAAGTATGACGCAGTCGCAAGGTTACTATTTACCCCCA
GTGCAGATGTCAAATCCACCAGCTCCAACTCACTTGTCCCAAGGTCAATATCTTTCATCT
GACCCCCAGTATCGTACTTCTCAAATGCAAGATCTTTCTAGGTTACCACCCCAGCCAGCA
GCACCTCCGGGGAATCAGACCCCACAAATCCAGTCAATGCCCCAATATCAGCAGCAGCAA
TGGGCGCAACAGGTACCTCAGCAGGTTCAAGCATCCCAGCAGCATCAGCTTCCAAGTGTG
CAACAGCAAGCTAGACCCTCATCACCTGCTGTTTATCCTTCTTATCCACCCAGTCAACCG
AATTCTTCTCCTGAACCTGTCCCCAATAGCATGCCAATGCAAGTGTCATTTTCCACGATC
CCTCAATCAGTTTCAAGCCGTCCAGAAGCAATACCCTATGGGTATGATAGGTCTGGCAGG
CCACTTCAGTCACAGCCTCCAACCCAGCATCTCAAGCCTTCTTTTGGTGCTCCAGGGGAT
GGGTATGCCGCTAGTGGGCCTCATCCATCTCTTTCTGCAGGAAATGCATATTTGATGTAC
GACAGTGAAGGCCCAAGGGGACATCCACCACAACCACCAAATTTCCCACAAAGTGGTTAT
CCTCCCTCCAGCTTCCCTCCCCAGAACGCACAGTCCTCCCCGAGCCCCAATCATATGTTT
CGTCCACCTCAATTGATGCGCACTCATCCTTACAATGAATTAATTGAGAAGCTGGCAAGC
ATGGGCTACAGGGGTGATCATGTGGTTAATGTTATCCAAAGGCTCGAAGAAAGTGGTCAG
ACAGTTGATTTCAATACTGTGCTCGACAGGCTGAATGGACATTCTTCAGGTGGTCCTCAG
AGAGGATGGTCGGGTTAGGTCATTATCCATAACCTTTCTAATCATGTTTTCATGTAGGGT
CTTCTGAAAATAGTGAAAGTACAATTTGACTCGAATACTATCTATTTGCTGAATAAGGGT
CATATAAGTAGGCAGTTGACGATGATGTATGCAGCGCTATCATGCTGTGTATTGTAGATT
TGCCATGTCTTACTTCTGAAGTTTTATTTGTTGTAAGGCAAAAATGTTTTCAACATTGTA
ATGTAGGAGAATTGATGAATACCTCTTTTTTAAGATTGAACCATCTTCTCTC