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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g007800.3.1
CDS Infomation

protodermal factor 1 (AHRD V3.3 *-* AT2G42840.1)
Sequence

ATGGAGAAGCAAAGAAGCAAACAGACTTCTCTAATCCTGTGGGCTACAATTGCTTCATTA
CTCATCATGCAGAATTTGGTCACTCCTGTCATTTCTTGCAGAACTCCTCCAAAAAATTCG
CGAACACCTCCATCACATGGCGGCTCAGGAAGTGGTGGCTCTCGAAATACACCTTCACAT
GGAAGCAAAAGCCATGGCGGAAAATCACATTCTGGCTGTGATAATCCGCCAAGTGGAGGG
GGTAGCGGACATACTCCAACCCTAGCTCCTCCTTCGGGAGGAACCGGAGGTGGTTACTCT
CCGCCATCCCCTCCAAGTACCCCCTCCACACCGGATATCTCCGTACCATCACCTCCATTT
GACCCTAATTCACCACCTTCTGGAGGGGGCGGATACTATCCCTCCCCTCCAACTGATAGT
GGGACCCCACCAACTACGCCTATCATAAGCCCTGACACTCCTTCAACTCCATTTGACCCT
AATTCACCACCTTCTGGAGGGGGCGGATACTATCCATCCCCTCCAACTGATAGTGGGACC
CCACCAACTACGCCTATCATAAGCCCTGACACTCCTTCAACTCCATTTGACCCCAATTCA
CCACCTTCTGGAGGGGGTGGGTACTATCCATCCCCTCCAACTTATGATACCCCTACCACA
CCAACGACTCCTATCATCGGCCCTGACACTCCAAGCATTCCCGATATATTCACTCCTTCA
ACTCCATTTGACCCCAATTCACCACCTTCGGGCGGGTACTATCTCTCCCCTCCAACTTTC
CCTACACCTAGTACCCCCGGTATACCCACATTTTTCCCACCAACTACTCCTATCATCAAC
CCGGGCATCCCAGGCACCCCCGGTATCTACATACCTCCACCTCTATTCGATCCTAACTCA
CCACCTTTCTCAATCGATTACTGGAGGACTAACCCGGCTTTAATATGGGCCTTGTGTGGC
TGGTGGGCAACTATTGGTAGTGCATTTGGTGTAGCTCCTGCTCCGGGGCTCGGATCAAAC
TTCAACCTCCTACAAGCACTTACAAACACTCGTTCCGATGGTGTTGGTGAACTCTACAGG
GAAGGCACAGCTTCTTTACTGAACTCAATGGTGAACAAGAAGTTTCCTTATACTACAAAA
CAAGTTAGGGAAAATTTTGTTGCAGCACTTAGTTCAAACAAGGCTGCTGCAGCTCAGGCA
GCGCGATTTAAGTTAGCAAACGAGGGTAGATTCAAGCGTAGAGCTTGA

Peptide Sequence

PEP ID

Solyc10g007800.3.1
PEP Infomation

protodermal factor 1 (AHRD V3.3 *-* AT2G42840.1)
Sequence

MEKQRSKQTSLILWATIASLLIMQNLVTPVISCRTPPKNSRTPPSHGGSGSGGSRNTPSH
GSKSHGGKSHSGCDNPPSGGGSGHTPTLAPPSGGTGGGYSPPSPPSTPSTPDISVPSPPF
DPNSPPSGGGGYYPSPPTDSGTPPTTPIISPDTPSTPFDPNSPPSGGGGYYPSPPTDSGT
PPTTPIISPDTPSTPFDPNSPPSGGGGYYPSPPTYDTPTTPTTPIIGPDTPSIPDIFTPS
TPFDPNSPPSGGYYLSPPTFPTPSTPGIPTFFPPTTPIINPGIPGTPGIYIPPPLFDPNS
PPFSIDYWRTNPALIWALCGWWATIGSAFGVAPAPGLGSNFNLLQALTNTRSDGVGELYR
EGTASLLNSMVNKKFPYTTKQVRENFVAALSSNKAAAAQAARFKLANEGRFKRRA*

Transcript Sequence

Transcript ID

Solyc10g007800.3.1
Transcript Infomation

protodermal factor 1 (AHRD V3.3 *-* AT2G42840.1)
Sequence

TGTCCTCTTTACTCTTTATATACAACTCTTCTCTTGTATCAGTATACATCTCTCTTTTCT
CTCATTTAGTTCCCTTGAGAGCAAATAAAGATGGAGAAGCAAAGAAGCAAACAGACTTCT
CTAATCCTGTGGGCTACAATTGCTTCATTACTCATCATGCAGAATTTGGTCACTCCTGTC
ATTTCTTGCAGAACTCCTCCAAAAAATTCGCGAACACCTCCATCACATGGCGGCTCAGGA
AGTGGTGGCTCTCGAAATACACCTTCACATGGAAGCAAAAGCCATGGCGGAAAATCACAT
TCTGGCTGTGATAATCCGCCAAGTGGAGGGGGTAGCGGACATACTCCAACCCTAGCTCCT
CCTTCGGGAGGAACCGGAGGTGGTTACTCTCCGCCATCCCCTCCAAGTACCCCCTCCACA
CCGGATATCTCCGTACCATCACCTCCATTTGACCCTAATTCACCACCTTCTGGAGGGGGC
GGATACTATCCCTCCCCTCCAACTGATAGTGGGACCCCACCAACTACGCCTATCATAAGC
CCTGACACTCCTTCAACTCCATTTGACCCTAATTCACCACCTTCTGGAGGGGGCGGATAC
TATCCATCCCCTCCAACTGATAGTGGGACCCCACCAACTACGCCTATCATAAGCCCTGAC
ACTCCTTCAACTCCATTTGACCCCAATTCACCACCTTCTGGAGGGGGTGGGTACTATCCA
TCCCCTCCAACTTATGATACCCCTACCACACCAACGACTCCTATCATCGGCCCTGACACT
CCAAGCATTCCCGATATATTCACTCCTTCAACTCCATTTGACCCCAATTCACCACCTTCG
GGCGGGTACTATCTCTCCCCTCCAACTTTCCCTACACCTAGTACCCCCGGTATACCCACA
TTTTTCCCACCAACTACTCCTATCATCAACCCGGGCATCCCAGGCACCCCCGGTATCTAC
ATACCTCCACCTCTATTCGATCCTAACTCACCACCTTTCTCAATCGATTACTGGAGGACT
AACCCGGCTTTAATATGGGCCTTGTGTGGCTGGTGGGCAACTATTGGTAGTGCATTTGGT
GTAGCTCCTGCTCCGGGGCTCGGATCAAACTTCAACCTCCTACAAGCACTTACAAACACT
CGTTCCGATGGTGTTGGTGAACTCTACAGGGAAGGCACAGCTTCTTTACTGAACTCAATG
GTGAACAAGAAGTTTCCTTATACTACAAAACAAGTTAGGGAAAATTTTGTTGCAGCACTT
AGTTCAAACAAGGCTGCTGCAGCTCAGGCAGCGCGATTTAAGTTAGCAAACGAGGGTAGA
TTCAAGCGTAGAGCTTGAAATGAAGGCTCGTATCAATAATTCTGATTCTACGTATGGACA
TTTTCTCATCACTACTTCGTTCATTCGCAATAGTAAATGTATGCAACTAAGGTATCCTAA
CAGATCAGTAGAGCTTGAACTTTGGTTCATGTT