Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g007140.3.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G53190.2)
Sequence

ATGTCGTATAGTAATCAAATAACTGATTCAGAAGCGGAACAAAGAAGCCAAGATGTTCAA
CCGGAGCCTTATGCTTTCTACAGGAGCTTAGCAACCTTTCCGCAGCCTAATGTCCATGCG
ATATTACCAGCTCCTGGAAATGCTGGTAATTTCTATTTGCACCATCCACAGTACCATCAA
GAAGGTGCATTAGTTTATGGAAAGTTGCAGTATGACGGGGTTCAATATCAGCATCCTGCC
ACCAATCTTGACCCAGCCATTGCTTCATCGTCAAATCACTATAACCATTACATGGCTGCT
CCATCCACTCCTAGAGATTTCCCCATTCCAGTAAACCACGGGCAACATGAGCAGCTTCCA
TTTGCAAGCACTCAAGGCAACCTTGGAGTTAATGAAGGCAATTATGGAAGGAACAATCCT
TATGTAGATGGTGTTGGAGGCTCGTTTAAGAGAAAGAATGCTGAAGGGATCCCTGTGAAC
TTTCAGTATCAACATGCTTTGGTAGGCTCCAGCTTTCCTCTTGCCTCAATGAATGCTGCG
TCCTTTGTACCACCTGAATACAGAGGGAATGGCTCATTATCATTCACCGAGGATGGAGCA
CCGAGAGGTATGAACAATCATCAGCTTCAAGGGAACTATGTCGGCCAAGCCTGTGAATTT
CCTGGCAATTTTTGGTCAGGCTTGCAGTTCAACAGCAGTGCTAGGGAGAGTGAAACATGG
GCCTGGAATCATAGTGCTCGTCTACCTTATCTACCTGGTGATACTCAAGGCTGTGAAGAT
GGTGGAAATATCAGCGTGCGAGGATATCAAGTAACAAACGGAAATGGAGGTTTGACTAGT
TTTATATATCCATCCATTCCTCAAGGGCACCCAAACCTTCGTCATCTACCACCACATATT
CAAGGAGTGAGACCCCAATTTATCACTCTCCCTCCTCAGATGACTGCTTCTTCACACAGA
CACCTACCAAGTAGCTCGTTTGACAGCACTATCAATCCATTTGCCCTTGTAGAGGCAGGG
TCTAGATATATTAGACCATTCCCACCGACTGCCTTTAGATTGTACAGACCTCAGCGAGGG
GAATTCATGCTTGGAACAAATACTAGACTTCACAACCTACCTAACATGAGAGTTCTTCCG
GAGGATGGTGTGGCAATGCTGGATATTCCTGGCTATCATGAAGTGCGTGATTCTGTTGAT
CAGCACAGGGAGATGCGTATGGACGTAGATCACATGTCTTATGAGGAGCTTCTTGCATTG
GGAGAGCAGATTGGCACTGCAAAAACTGGGTTATCGGAGGAGGTTATTGTTGGCCATTTG
AAAACAAGATCATTTTCATCCACGGAAATTCCTTGCAATTTGGAAAATGCTGCATGTTTA
GATCACAAGACTGATTTTTGTGTCATTTGCCAGTCTGATTACAAGGACCAAGAGAACGTG
GGAACTCTTGATTGTGGGCATGAATATCATGCAGAGTGCGTAACAAATTGGTTGATTCTG
AAGAACAATTGTCCCATTTGCAAGTCCACAGCCTTGTGCGCAGAAGCAAAGGATTCCTGA

Peptide Sequence

PEP ID

Solyc10g007140.3.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G53190.2)
Sequence

MSYSNQITDSEAEQRSQDVQPEPYAFYRSLATFPQPNVHAILPAPGNAGNFYLHHPQYHQ
EGALVYGKLQYDGVQYQHPATNLDPAIASSSNHYNHYMAAPSTPRDFPIPVNHGQHEQLP
FASTQGNLGVNEGNYGRNNPYVDGVGGSFKRKNAEGIPVNFQYQHALVGSSFPLASMNAA
SFVPPEYRGNGSLSFTEDGAPRGMNNHQLQGNYVGQACEFPGNFWSGLQFNSSARESETW
AWNHSARLPYLPGDTQGCEDGGNISVRGYQVTNGNGGLTSFIYPSIPQGHPNLRHLPPHI
QGVRPQFITLPPQMTASSHRHLPSSSFDSTINPFALVEAGSRYIRPFPPTAFRLYRPQRG
EFMLGTNTRLHNLPNMRVLPEDGVAMLDIPGYHEVRDSVDQHREMRMDVDHMSYEELLAL
GEQIGTAKTGLSEEVIVGHLKTRSFSSTEIPCNLENAACLDHKTDFCVICQSDYKDQENV
GTLDCGHEYHAECVTNWLILKNNCPICKSTALCAEAKDS*

Transcript Sequence

Transcript ID

Solyc10g007140.3.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G53190.2)
Sequence

ACAAGAGGGCATTTCAAGAAACACCATTGAAAAATCCCTCTTCATCGCATTATCAATCTT
CACTCTGGTTAGCCCCTTTTTCTATTTTGTTTTTTTTCTCAAAGGATGAAGCATTTCAGT
GAAAAAGTTACAATTTTTATGTGTTTTTTGGCAAAAAATTGCATGTTTTTTTGTTTGTCA
CTTGCATGTTACTTCGATTGAATAATGCTGATAGGCAGTCTCCACTGAATTTAATTCGAT
AACATTGCACAAAGGAGTATGTCGTATAGTAATCAAATAACTGATTCAGAAGCGGAACAA
AGAAGCCAAGATGTTCAACCGGAGCCTTATGCTTTCTACAGGAGCTTAGCAACCTTTCCG
CAGCCTAATGTCCATGCGATATTACCAGCTCCTGGAAATGCTGGTAATTTCTATTTGCAC
CATCCACAGTACCATCAAGAAGGTGCATTAGTTTATGGAAAGTTGCAGTATGACGGGGTT
CAATATCAGCATCCTGCCACCAATCTTGACCCAGCCATTGCTTCATCGTCAAATCACTAT
AACCATTACATGGCTGCTCCATCCACTCCTAGAGATTTCCCCATTCCAGTAAACCACGGG
CAACATGAGCAGCTTCCATTTGCAAGCACTCAAGGCAACCTTGGAGTTAATGAAGGCAAT
TATGGAAGGAACAATCCTTATGTAGATGGTGTTGGAGGCTCGTTTAAGAGAAAGAATGCT
GAAGGGATCCCTGTGAACTTTCAGTATCAACATGCTTTGGTAGGCTCCAGCTTTCCTCTT
GCCTCAATGAATGCTGCGTCCTTTGTACCACCTGAATACAGAGGGAATGGCTCATTATCA
TTCACCGAGGATGGAGCACCGAGAGGTATGAACAATCATCAGCTTCAAGGGAACTATGTC
GGCCAAGCCTGTGAATTTCCTGGCAATTTTTGGTCAGGCTTGCAGTTCAACAGCAGTGCT
AGGGAGAGTGAAACATGGGCCTGGAATCATAGTGCTCGTCTACCTTATCTACCTGGTGAT
ACTCAAGGCTGTGAAGATGGTGGAAATATCAGCGTGCGAGGATATCAAGTAACAAACGGA
AATGGAGGTTTGACTAGTTTTATATATCCATCCATTCCTCAAGGGCACCCAAACCTTCGT
CATCTACCACCACATATTCAAGGAGTGAGACCCCAATTTATCACTCTCCCTCCTCAGATG
ACTGCTTCTTCACACAGACACCTACCAAGTAGCTCGTTTGACAGCACTATCAATCCATTT
GCCCTTGTAGAGGCAGGGTCTAGATATATTAGACCATTCCCACCGACTGCCTTTAGATTG
TACAGACCTCAGCGAGGGGAATTCATGCTTGGAACAAATACTAGACTTCACAACCTACCT
AACATGAGAGTTCTTCCGGAGGATGGTGTGGCAATGCTGGATATTCCTGGCTATCATGAA
GTGCGTGATTCTGTTGATCAGCACAGGGAGATGCGTATGGACGTAGATCACATGTCTTAT
GAGGAGCTTCTTGCATTGGGAGAGCAGATTGGCACTGCAAAAACTGGGTTATCGGAGGAG
GTTATTGTTGGCCATTTGAAAACAAGATCATTTTCATCCACGGAAATTCCTTGCAATTTG
GAAAATGCTGCATGTTTAGATCACAAGACTGATTTTTGTGTCATTTGCCAGTCTGATTAC
AAGGACCAAGAGAACGTGGGAACTCTTGATTGTGGGCATGAATATCATGCAGAGTGCGTA
ACAAATTGGTTGATTCTGAAGAACAATTGTCCCATTTGCAAGTCCACAGCCTTGTGCGCA
GAAGCAAAGGATTCCTGAAAATAGGCGATATATGATCACCTGAATGAACTAAAGAGCAAA
CATTCTGAATCTGTTGCTAAATATTTATTCTCCGATGAGTAGGAAACGTTACTGAAACTG
TACAAATGTACTGTATTTTTGTATATATATTCGGCATGATATGACTGACTGTCAACATGT
CCAAAAAACAACCTGTTGACCTTATCTATGTCATGTGAAGTTGTACAGAAACTTGTAGTT
TTTTTTTGGTCTGTCTCCTGTAGTTGTACTTACTACAGACCTCTTAATGGGCATTTTATC
CCCTTTCAGACAATTACTCTTTGGTTATTGTTGTTGATGTGTTCTTGTGTAATGGTTTTT
CTTGTTAATGCTGATGCAAAAAGGTTGCCTTTGAAGTTTCTTTTGGTATATTT