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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g006900.3.1
CDS Infomation

light dependent NADH:protochlorophyllide oxidoreductase 3 s2
Sequence

ATGGCTCTTCAGGCTTCTTCTCTACTTCCTTCTACTTTCTCCAAGGGCAAAGCTAGTGCA
ACTTTGAAGAATTCTAGTATTTTTGGAGCTTCTCTTTCTGATTATACTAAATCTGATTTT
GGTTCATCTTCATTTAGAGTTAAGAACCAAAGAAGATCGTCAAATGGCGGTGTTGTAAGA
GCTACAATGGTTGCTTCTCCTGGTGTAACTACTAACTCTCCATCAGGAAAAAAAACACTA
AGAAAAGGTTGTGTAATAGTCACTGGTGCCTCATCAGGATTAGGCTTAGCCACAGCAAAA
GCTCTGTCTGAAACAGGGAAATGGCATGTTATTATGGCATGTAGGGACTTTTTAAAAGCT
GAGAAAGCTGCAAAATCAGTTGGGATGTCTAAGGAGAATTACACCATCATGCATTTGGAC
CTCGCCTCTCTTGACAGTGTACGTCAATTCGTTGATAACTTCAGGAGGTCGGGACGACCT
CTTGACGTGTTGGTTGCTAATGCTGCTGTTTACCAACCAACTGCTAAAGAGCCTTCATTT
ACTGCAGAAGGATTTGAGCTTAGTGTTGGAACTAACCATCTTGGACATTTTCTTCTTTCG
AGATTGTTGCTTGATGACTTGAAGCAATCTGATTATCCTTCAAAGAGACTCATCATTGTT
GGTTCAATTACAGGGAACACGAATACTCTGGCTGGAAATGTACCTCCAAAGGCCAATCTC
GGCGACTTGAGGGGTATGGCGGGAGGTTTAAATGGAATTAACAGCTCAGCGATGATCGAT
GGAGGTGAATTTGACGGTGCAAAAGCATACAAAGACAGCAAGGTGTGCAACATGCTTACG
ATGCAGGAATTCCATCGTCGATACCACGAGGAAACTGGTATCACATTTGCCTCTCTTTAC
CCTGGCTGCATTGCAACAACAGGGCTATTCAGAGAACACATCCCCTTGTTTAGGCTTCTT
TTCCCACCATTTCAAAAGTATATTACGAAGGGATATGTCTCTGAGACTGAATCTGGAAAG
AGACTTGCTCAGGTTGTGAGTGATCCAAGCTTGACAAAATCAGGTGTCTACTGGAGCTGG
AACAAAGACTCAGCTTCTTTCGAAAACCAGTTGTCCGAAGAAGCAAGTGATGCAGAGAAA
GCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTTGGTTTGGCTTAA

Peptide Sequence

PEP ID

Solyc10g006900.3.1
PEP Infomation

light dependent NADH:protochlorophyllide oxidoreductase 3 s2
Sequence

MALQASSLLPSTFSKGKASATLKNSSIFGASLSDYTKSDFGSSSFRVKNQRRSSNGGVVR
ATMVASPGVTTNSPSGKKTLRKGCVIVTGASSGLGLATAKALSETGKWHVIMACRDFLKA
EKAAKSVGMSKENYTIMHLDLASLDSVRQFVDNFRRSGRPLDVLVANAAVYQPTAKEPSF
TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL
GDLRGMAGGLNGINSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLY
PGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSETESGKRLAQVVSDPSLTKSGVYWSW
NKDSASFENQLSEEASDAEKARKVWEVSEKLVGLA*

Transcript Sequence

Transcript ID

Solyc10g006900.3.1
Transcript Infomation

light dependent NADH:protochlorophyllide oxidoreductase 3 s2
Sequence

GTGTGTGTGTGTGACCAAACCTCTGCCAGTACCAGTAGTTCTACAGACTAAAAATTCCCA
AAATTGAACTTCTTAATGGCTCTTCAGGCTTCTTCTCTACTTCCTTCTACTTTCTCCAAG
GGCAAAGCTAGTGCAACTTTGAAGAATTCTAGTATTTTTGGAGCTTCTCTTTCTGATTAT
ACTAAATCTGATTTTGGTTCATCTTCATTTAGAGTTAAGAACCAAAGAAGATCGTCAAAT
GGCGGTGTTGTAAGAGCTACAATGGTTGCTTCTCCTGGTGTAACTACTAACTCTCCATCA
GGAAAAAAAACACTAAGAAAAGGTTGTGTAATAGTCACTGGTGCCTCATCAGGATTAGGC
TTAGCCACAGCAAAAGCTCTGTCTGAAACAGGGAAATGGCATGTTATTATGGCATGTAGG
GACTTTTTAAAAGCTGAGAAAGCTGCAAAATCAGTTGGGATGTCTAAGGAGAATTACACC
ATCATGCATTTGGACCTCGCCTCTCTTGACAGTGTACGTCAATTCGTTGATAACTTCAGG
AGGTCGGGACGACCTCTTGACGTGTTGGTTGCTAATGCTGCTGTTTACCAACCAACTGCT
AAAGAGCCTTCATTTACTGCAGAAGGATTTGAGCTTAGTGTTGGAACTAACCATCTTGGA
CATTTTCTTCTTTCGAGATTGTTGCTTGATGACTTGAAGCAATCTGATTATCCTTCAAAG
AGACTCATCATTGTTGGTTCAATTACAGGGAACACGAATACTCTGGCTGGAAATGTACCT
CCAAAGGCCAATCTCGGCGACTTGAGGGGTATGGCGGGAGGTTTAAATGGAATTAACAGC
TCAGCGATGATCGATGGAGGTGAATTTGACGGTGCAAAAGCATACAAAGACAGCAAGGTG
TGCAACATGCTTACGATGCAGGAATTCCATCGTCGATACCACGAGGAAACTGGTATCACA
TTTGCCTCTCTTTACCCTGGCTGCATTGCAACAACAGGGCTATTCAGAGAACACATCCCC
TTGTTTAGGCTTCTTTTCCCACCATTTCAAAAGTATATTACGAAGGGATATGTCTCTGAG
ACTGAATCTGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCTTGACAAAATCAGGT
GTCTACTGGAGCTGGAACAAAGACTCAGCTTCTTTCGAAAACCAGTTGTCCGAAGAAGCA
AGTGATGCAGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTTGGTTTGGCT
TAAATTTTGAACTAACCTTAGTCATCGTCGATGAAAACAGGAAAAATGACTTCGCGAGTG
AGAATTTGTAACCGAAATTTCTAGGATGTTGTAAAGAGAAGTGTCATTGTAGTTAGGATT
GAAAATAAAGATCACTCAACTTGTTTTGTTTTGTGTTTGGAAAATGTCACTAATTTGCCT
TTGAAGTTAAATGAAGTGATGGTTCATGAGCATTGTTCAATTAAACTTCTCTTCTGAACT
TTTTCTCACTTATACTAAACAAAAAAAAT