Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g006890.3.1
CDS Infomation

WD-repeat protein, putative (AHRD V3.3 *** B9T7M5_RICCO)
Sequence

ATGGATGGCATTGGATCTGAGTTCCCAAATAGTCCATTTGACGAAGTGGGTGTTGATTGG
AGGAGAAGAATGAGCAAAGCAAGAGAAGGAGAAGACGAGAACGAGTGCTTTCACGATTCT
CTTGATCGTTTGCTTTCTTCTGCAAACACTTCTTGTTCCTCATCTTCTTCGCCTTCTGAA
GACGAAGGAGAAGAAGATAGAGATTGTATTTCAAATTGGGGTCTCCCCAATTATGCAATG
GGAGTTTTGAATAACTATGACGTGTGGATCTCTGAACCTTCCTCTATTGAAGAACGTCGA
CTCCGGCTTTTTCGTCAAATGGGTCTCAGTCGTGGTGCTGGCAGATCGGTTTCATCAGTT
CATTTGGAGTGTCAAGCTGTTTGTGCTGAAGGTATACCTAATTGTAGTAGTTCCCAAGCT
AGTAGTGTTAAGTGTAGTGTTTCTAAGAATATTCCATCAAAATTGAATGGCGATTCCAAT
TGCAATAGTTCTTCAGTTCATAAAAGTAGTGATATTCTTTGTGTCAATTCTATTTCCTCG
TCATCAGTATCTGTCAGTGTAGCCAATGGTGGTGAATGTATAGTTGTAAATAATGATGGA
AACTCAGGTCAATGTCGCGGTGATGATCAATTACATGAGGGCAATGGATCTGTATTGACG
ATTAGAACCGATTCCAGGGACAATGAGAGCTGTAATTTGTTACCGATAGTGGAAAATGGT
GAGCTTGAGGATGATTTGGAATCAAATAGAGATGTTGAAATTGAGGAGAGTGTGTGCACG
ATAAAGAATCTTGATAATGGAAAGGAATTTGTGGTTAATGAAGTGAGGGAGGACGGGATG
TGGAACAAACTTAAGGAAGTCAGTACAGGAAAGCAGTTGACTATTGAAGAATTTGATATG
TGTGTTGGAACTTCACCAATAGTGCAGGAATTGATGAGAAGACAGAATGTGGAAGATGGG
AATAATAATAATTTGGATTGTAATACGCATGGGATTGGTGGGACTGGTCCTAAGAATAAA
AAGAGGGGTAGCTGGTTGAAGAGCATTAGAAATGTGGCTAGCTCGGTGGCAGGTCATAAG
GAACGTCGGAGTAGTGATGAGAGGGATACATCTTCTGAAAAGGGTGGTCGACGGTCAAGC
TCTGCCACAGATGATAGTCAGGATGCTTCCCCTCATGGACCTGAAAGAGTTAGGGTGAGG
CAGTATGGGAAGTCCAGCAAAGAACTTACAGCTCTTTATAAGAGCCAAGAGATACAGGCA
CACACCGGGTCTATTTGGACCATACAATTTAGTTTGGATGGAAAATATCTTGCTAGTGCC
GGTGAGGATCGCATCATACATGTTAGGGAGGTTACATCATCAGAGAGAAAGGGTGATCTA
TTGCTGGATAAACCAGAAGATGGGAATTTGAACCTATTGATATCGGCAAATGCTTCTCCC
GAGCCAACAACTATGTCACCAAATTTTGATGTCCACTTGGAGGAGAAGAAACGGAGAGGG
AGGTCATCTGTTAGTCGAAAATCAATGTGCTTTGACCATATTTTGGTGCCTGAGACAGTT
TTTGCTCTTTCAGAAAAGCCCATCTGTTCATTTGAGGGACATTTGGATGATGTGCTTGAC
CTCTCGTGGTCCAAGTCTCAGCAATTGCTCTCATCATCAATGGACAAAACAGTGCGGCTT
TGGGAACTGTCTAGTAAAACTTGTCTGAAGATCTTCTCACACAGTGACTATGTAACCTGC
ATCCAGTTTAACCCTGTTGATGATAGATACTTCATCAGTGGCTCCCTAGATGCTAAGGTT
CGCATATGGAGCATTCCTGAGCGGCAAGTTGTTGATTGGAATGATCTGCATGAGATGGTC
ACTGCTGCTTGCTACACACCAGATGGTCAGGGGGCACTTGTTGGGTCATACAAGGGGAGC
TGTCATTTGTACAACATATTAGATAATAAATTGCAGCAAAAAGCTCAAATCAATCTGCAG
AATAAGAAGAAGAGGACTCACCAAAGGAAAATTACTGGTTTCCAGTTTGTGCCAGGAAGT
ATGTCACAAGTGCTTATAACATCTGCAGACTCAAGAATTCGGGTTGTGGATGATGCTGAT
CTTTTTCACAAGTTCAAAGGTTTCCGCAATACGAGTAGGCAAATCTCAGCATCTATGACG
GCTGATGGTAGATATGTGGTCTGTGCTAGCGAGGATTCACATGTCTATATCTGGAAACAC
GAAGGTCACTCTCGACCAAGCAGAAATAAAGGTGTTACTGTTACACAGTCTTATGAGCAT
TTTCATTCTCAAGATGTTTCAGTGGCCATTCCTTGGCCTGGTATGTTGGATACTTGGAGA
TATCATACTTCATCTTCTGGAGAACTAAGTGGTCATGATGGTCTCGACGAGGTCTCCACT
GCTAACCATCCACCTTCACCTGTTGAAGAGATTGACAATGAGTGCTCGCCATTGACTTCT
GGCTGTGGTAACAGTCCTCTTCATGGAACCATATCCAGTGCCGCAAACAACTACTTTTTT
GATAGAATCTCAGCAACATGGCCGGAGGAAAAACTTCTCTTAGCTACTAAATATCGTAGT
CCTCGAGTGAGTACAGATGCTAGTATCGACTTCTCCAATGGCTTAACTCAAACAAAGTTC
TGCTGGGGTTTGGTCATTGTAACTGCAAGCCACCGCGGGGAGATCAGGACTTTCCAAAAT
TTTGGCTTACCATTTCGGATTTAA

Peptide Sequence

PEP ID

Solyc10g006890.3.1
PEP Infomation

WD-repeat protein, putative (AHRD V3.3 *** B9T7M5_RICCO)
Sequence

MDGIGSEFPNSPFDEVGVDWRRRMSKAREGEDENECFHDSLDRLLSSANTSCSSSSSPSE
DEGEEDRDCISNWGLPNYAMGVLNNYDVWISEPSSIEERRLRLFRQMGLSRGAGRSVSSV
HLECQAVCAEGIPNCSSSQASSVKCSVSKNIPSKLNGDSNCNSSSVHKSSDILCVNSISS
SSVSVSVANGGECIVVNNDGNSGQCRGDDQLHEGNGSVLTIRTDSRDNESCNLLPIVENG
ELEDDLESNRDVEIEESVCTIKNLDNGKEFVVNEVREDGMWNKLKEVSTGKQLTIEEFDM
CVGTSPIVQELMRRQNVEDGNNNNLDCNTHGIGGTGPKNKKRGSWLKSIRNVASSVAGHK
ERRSSDERDTSSEKGGRRSSSATDDSQDASPHGPERVRVRQYGKSSKELTALYKSQEIQA
HTGSIWTIQFSLDGKYLASAGEDRIIHVREVTSSERKGDLLLDKPEDGNLNLLISANASP
EPTTMSPNFDVHLEEKKRRGRSSVSRKSMCFDHILVPETVFALSEKPICSFEGHLDDVLD
LSWSKSQQLLSSSMDKTVRLWELSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKV
RIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNILDNKLQQKAQINLQ
NKKKRTHQRKITGFQFVPGSMSQVLITSADSRIRVVDDADLFHKFKGFRNTSRQISASMT
ADGRYVVCASEDSHVYIWKHEGHSRPSRNKGVTVTQSYEHFHSQDVSVAIPWPGMLDTWR
YHTSSSGELSGHDGLDEVSTANHPPSPVEEIDNECSPLTSGCGNSPLHGTISSAANNYFF
DRISATWPEEKLLLATKYRSPRVSTDASIDFSNGLTQTKFCWGLVIVTASHRGEIRTFQN
FGLPFRI*

Transcript Sequence

Transcript ID

Solyc10g006890.3.1
Transcript Infomation

WD-repeat protein, putative (AHRD V3.3 *** B9T7M5_RICCO)
Sequence

TCTTCCCAATTCAATGGATGGCATTGGATCTGAGTTCCCAAATAGTCCATTTGACGAAGT
GGGTGTTGATTGGAGGAGAAGAATGAGCAAAGCAAGAGAAGGAGAAGACGAGAACGAGTG
CTTTCACGATTCTCTTGATCGTTTGCTTTCTTCTGCAAACACTTCTTGTTCCTCATCTTC
TTCGCCTTCTGAAGACGAAGGAGAAGAAGATAGAGATTGTATTTCAAATTGGGGTCTCCC
CAATTATGCAATGGGAGTTTTGAATAACTATGACGTGTGGATCTCTGAACCTTCCTCTAT
TGAAGAACGTCGACTCCGGCTTTTTCGTCAAATGGGTCTCAGTCGTGGTGCTGGCAGATC
GGTTTCATCAGTTCATTTGGAGTGTCAAGCTGTTTGTGCTGAAGGTATACCTAATTGTAG
TAGTTCCCAAGCTAGTAGTGTTAAGTGTAGTGTTTCTAAGAATATTCCATCAAAATTGAA
TGGCGATTCCAATTGCAATAGTTCTTCAGTTCATAAAAGTAGTGATATTCTTTGTGTCAA
TTCTATTTCCTCGTCATCAGTATCTGTCAGTGTAGCCAATGGTGGTGAATGTATAGTTGT
AAATAATGATGGAAACTCAGGTCAATGTCGCGGTGATGATCAATTACATGAGGGCAATGG
ATCTGTATTGACGATTAGAACCGATTCCAGGGACAATGAGAGCTGTAATTTGTTACCGAT
AGTGGAAAATGGTGAGCTTGAGGATGATTTGGAATCAAATAGAGATGTTGAAATTGAGGA
GAGTGTGTGCACGATAAAGAATCTTGATAATGGAAAGGAATTTGTGGTTAATGAAGTGAG
GGAGGACGGGATGTGGAACAAACTTAAGGAAGTCAGTACAGGAAAGCAGTTGACTATTGA
AGAATTTGATATGTGTGTTGGAACTTCACCAATAGTGCAGGAATTGATGAGAAGACAGAA
TGTGGAAGATGGGAATAATAATAATTTGGATTGTAATACGCATGGGATTGGTGGGACTGG
TCCTAAGAATAAAAAGAGGGGTAGCTGGTTGAAGAGCATTAGAAATGTGGCTAGCTCGGT
GGCAGGTCATAAGGAACGTCGGAGTAGTGATGAGAGGGATACATCTTCTGAAAAGGGTGG
TCGACGGTCAAGCTCTGCCACAGATGATAGTCAGGATGCTTCCCCTCATGGACCTGAAAG
AGTTAGGGTGAGGCAGTATGGGAAGTCCAGCAAAGAACTTACAGCTCTTTATAAGAGCCA
AGAGATACAGGCACACACCGGGTCTATTTGGACCATACAATTTAGTTTGGATGGAAAATA
TCTTGCTAGTGCCGGTGAGGATCGCATCATACATGTTAGGGAGGTTACATCATCAGAGAG
AAAGGGTGATCTATTGCTGGATAAACCAGAAGATGGGAATTTGAACCTATTGATATCGGC
AAATGCTTCTCCCGAGCCAACAACTATGTCACCAAATTTTGATGTCCACTTGGAGGAGAA
GAAACGGAGAGGGAGGTCATCTGTTAGTCGAAAATCAATGTGCTTTGACCATATTTTGGT
GCCTGAGACAGTTTTTGCTCTTTCAGAAAAGCCCATCTGTTCATTTGAGGGACATTTGGA
TGATGTGCTTGACCTCTCGTGGTCCAAGTCTCAGCAATTGCTCTCATCATCAATGGACAA
AACAGTGCGGCTTTGGGAACTGTCTAGTAAAACTTGTCTGAAGATCTTCTCACACAGTGA
CTATGTAACCTGCATCCAGTTTAACCCTGTTGATGATAGATACTTCATCAGTGGCTCCCT
AGATGCTAAGGTTCGCATATGGAGCATTCCTGAGCGGCAAGTTGTTGATTGGAATGATCT
GCATGAGATGGTCACTGCTGCTTGCTACACACCAGATGGTCAGGGGGCACTTGTTGGGTC
ATACAAGGGGAGCTGTCATTTGTACAACATATTAGATAATAAATTGCAGCAAAAAGCTCA
AATCAATCTGCAGAATAAGAAGAAGAGGACTCACCAAAGGAAAATTACTGGTTTCCAGTT
TGTGCCAGGAAGTATGTCACAAGTGCTTATAACATCTGCAGACTCAAGAATTCGGGTTGT
GGATGATGCTGATCTTTTTCACAAGTTCAAAGGTTTCCGCAATACGAGTAGGCAAATCTC
AGCATCTATGACGGCTGATGGTAGATATGTGGTCTGTGCTAGCGAGGATTCACATGTCTA
TATCTGGAAACACGAAGGTCACTCTCGACCAAGCAGAAATAAAGGTGTTACTGTTACACA
GTCTTATGAGCATTTTCATTCTCAAGATGTTTCAGTGGCCATTCCTTGGCCTGGTATGTT
GGATACTTGGAGATATCATACTTCATCTTCTGGAGAACTAAGTGGTCATGATGGTCTCGA
CGAGGTCTCCACTGCTAACCATCCACCTTCACCTGTTGAAGAGATTGACAATGAGTGCTC
GCCATTGACTTCTGGCTGTGGTAACAGTCCTCTTCATGGAACCATATCCAGTGCCGCAAA
CAACTACTTTTTTGATAGAATCTCAGCAACATGGCCGGAGGAAAAACTTCTCTTAGCTAC
TAAATATCGTAGTCCTCGAGTGAGTACAGATGCTAGTATCGACTTCTCCAATGGCTTAAC
TCAAACAAAGTTCTGCTGGGGTTTGGTCATTGTAACTGCAAGCCACCGCGGGGAGATCAG
GACTTTCCAAAATTTTGGCTTACCATTTCGGATTTAAGGTGCCAACAAGAAGGTCCATGT
TTTCGGAGTGTCTGCCGAGATGCCACAGTACACAGCTACAGCCAAGTTACCAACTTTGTA
CAGATAGATTTGTAATATAAGTGATTTTTTTCTTTCTTTTGTATCAAAACTTAGATAAGG
AATTGTGAAGAGGGGGAAAAGATCTATAATGATATAAGAGTAGTATTGATGAAAAGGAAA
AAAAAAAGAAGGTAGAAAAGGGATAGTTTGTTTTCTGTAATCAGCAATTGTAGAGATGGA
AATCTTGTAATTTCATTGAGTTGAAACAAAATTCTTTGAAAATTCATTCAAATTTCTAAT
AGTATTTGTATACATTAGTAAATGTAGAAAATGTATGTGTAATTGTTTCTTCAACATTTA
TATGTAATTGTTCCTAGTTTCTTCACAAAAGGGGTGATAAAAATTTTTCGCCCTTAATGA
GAGCCGAGTGTGATATTTCGCGATAAAATT