Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g006730.1.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GVT5_POPTR)
Sequence

ATGTTGGCGTCTAAAGTTGCTATGTTGTTGGCTAAGCGTATGAAAATGAATCAAACAAAG
CAAATACATGCTGCAATACTTGTTAATGGTCTTTTTGATCTTGAGTCCTTGCTAGTTCAG
CAGATAATCAACTCTGCAAGTAGTTGCACTTATTATACCTCACACTATATTAAACTAGTC
CTCAGTCATTTGCAAAATTTAGATGTGTTCTCGGTGGCGTCTACCATTCGATTCTATTCT
AGGCATTGTCAGTTCAGGGAGGCTGTTAATTTATATGGAGAACTGCAGAGATGTGGACTT
AGTCCGAGTACATTTGCTGTATCGTCTGCTTTAAAGGCTTGTGCAAGGATTTTGTATAGG
TCTGGTGGGATATCGATTCATGCACAAGTTTTTAAGTATGGTTTTTGTAATGTTGTTTAT
GTGCAGACAGCTCTAGTAGATTTTTACTCGAAAGTAGGTAATATGGATTTTGCCCGGAGC
ATCTTTGATGATGAGATGGTTGAGAAAAATATTGTATCGTGGAATTCAGTGTTAGGTGGA
TATGTCAAATCTGGTGACTTAACAATGGCACAAAGTGTTTTTGATGAGATGCCGGAGAAG
GATGTTATTTCGTGGAACTCCATGGTGTCTGGGTATGCGAGGATGGGGAATATAGAGCGG
GCAAATGCATTGTTTAGACAGATGCCGGAGAGAAGTTCTGCCTCTTGGAATGCAATGATT
AGCGGATATATAGAGTGTGGGAAGATAGAGTTTGCACGCAGTTTCTTTGAGGCAATGGAC
AAAAAGAATAATGTTTCATATATCATATTGATTTCGGGATACTCAAAAAATGGAGATGTT
GAATCTGCTGAGGAACTCTTTGGAAAATTACGTAAGAAAGATCAAGTAGTATATAATGCC
ATGATAGCTTGTTATGCTCAAAACAGCCGGGCAAAAGAGGCTCTGCAGCTGTTCAATGAA
ATGCTTCAATTAGATTTGCAACCTGATGAAATGACTTTGGCAAGTGCTATTTCTGCTTGT
TCTCAGCTGGGAGATCTAAAGTTTGGTTCTTGGATTGAGTCGTTCATTCATGAAACTGGA
ATTCAAATGGATGACTTCTTGGCCACTAGTTTGATCGACCTTTATGCAAAATGTGGAAGT
ATTGATAAAGCTCACAAGCTGTTCCACGGCTTGAAAAAGAAAGATTTGGTAGCATATACT
GCCATGATACTGGGATGTGGAATAAATGGTAGGGCTAATGATGCCATCAAGTTGTTTGAT
GAGATGATGAATGCTGAAATTAACCCAAACATAGTCACAATCACAGGGATATTGACTGCC
TACAGTCACATTGGAATGGTAGAAGAAGCATACCGTTGTTTTATTTCCTTACAGAAGTAT
GGTCTTTCTCCCTCAGTTGACCATTACGCTATAGTAGTTGACCTTTTAAGTAGGGCAGGG
CGGTTAGAAGAAGCACATGGGTTGATTAAAAGCATGTCAATACAGCCTCATGCTGGTGTG
TGGGGTGCATTGCTTCTTGGTTGCAGTTTGCATAACAATTTAGAGCTTGGAGAGATCGCA
GCGACACGTTGTATAGAGTTGGAACCTGACAGTTCTGGATATCTTTCTCTTCTTGCAAAT
ATTTATGCTTCTTCGGGAAGGTGGGATGATGCTGAGAGGTTGAGAAAAGGTGTTGAAGAA
AAGGGATACAACAAATTGCCTGGTTGCAGTTGGATGGAAGAAGTAAAAGCTTAG

Peptide Sequence

PEP ID

Solyc10g006730.1.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GVT5_POPTR)
Sequence

MLASKVAMLLAKRMKMNQTKQIHAAILVNGLFDLESLLVQQIINSASSCTYYTSHYIKLV
LSHLQNLDVFSVASTIRFYSRHCQFREAVNLYGELQRCGLSPSTFAVSSALKACARILYR
SGGISIHAQVFKYGFCNVVYVQTALVDFYSKVGNMDFARSIFDDEMVEKNIVSWNSVLGG
YVKSGDLTMAQSVFDEMPEKDVISWNSMVSGYARMGNIERANALFRQMPERSSASWNAMI
SGYIECGKIEFARSFFEAMDKKNNVSYIILISGYSKNGDVESAEELFGKLRKKDQVVYNA
MIACYAQNSRAKEALQLFNEMLQLDLQPDEMTLASAISACSQLGDLKFGSWIESFIHETG
IQMDDFLATSLIDLYAKCGSIDKAHKLFHGLKKKDLVAYTAMILGCGINGRANDAIKLFD
EMMNAEINPNIVTITGILTAYSHIGMVEEAYRCFISLQKYGLSPSVDHYAIVVDLLSRAG
RLEEAHGLIKSMSIQPHAGVWGALLLGCSLHNNLELGEIAATRCIELEPDSSGYLSLLAN
IYASSGRWDDAERLRKGVEEKGYNKLPGCSWMEEVKA*

Transcript Sequence

Transcript ID

Solyc10g006730.1.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GVT5_POPTR)
Sequence

ATGTTGGCGTCTAAAGTTGCTATGTTGTTGGCTAAGCGTATGAAAATGAATCAAACAAAG
CAAATACATGCTGCAATACTTGTTAATGGTCTTTTTGATCTTGAGTCCTTGCTAGTTCAG
CAGATAATCAACTCTGCAAGTAGTTGCACTTATTATACCTCACACTATATTAAACTAGTC
CTCAGTCATTTGCAAAATTTAGATGTGTTCTCGGTGGCGTCTACCATTCGATTCTATTCT
AGGCATTGTCAGTTCAGGGAGGCTGTTAATTTATATGGAGAACTGCAGAGATGTGGACTT
AGTCCGAGTACATTTGCTGTATCGTCTGCTTTAAAGGCTTGTGCAAGGATTTTGTATAGG
TCTGGTGGGATATCGATTCATGCACAAGTTTTTAAGTATGGTTTTTGTAATGTTGTTTAT
GTGCAGACAGCTCTAGTAGATTTTTACTCGAAAGTAGGTAATATGGATTTTGCCCGGAGC
ATCTTTGATGATGAGATGGTTGAGAAAAATATTGTATCGTGGAATTCAGTGTTAGGTGGA
TATGTCAAATCTGGTGACTTAACAATGGCACAAAGTGTTTTTGATGAGATGCCGGAGAAG
GATGTTATTTCGTGGAACTCCATGGTGTCTGGGTATGCGAGGATGGGGAATATAGAGCGG
GCAAATGCATTGTTTAGACAGATGCCGGAGAGAAGTTCTGCCTCTTGGAATGCAATGATT
AGCGGATATATAGAGTGTGGGAAGATAGAGTTTGCACGCAGTTTCTTTGAGGCAATGGAC
AAAAAGAATAATGTTTCATATATCATATTGATTTCGGGATACTCAAAAAATGGAGATGTT
GAATCTGCTGAGGAACTCTTTGGAAAATTACGTAAGAAAGATCAAGTAGTATATAATGCC
ATGATAGCTTGTTATGCTCAAAACAGCCGGGCAAAAGAGGCTCTGCAGCTGTTCAATGAA
ATGCTTCAATTAGATTTGCAACCTGATGAAATGACTTTGGCAAGTGCTATTTCTGCTTGT
TCTCAGCTGGGAGATCTAAAGTTTGGTTCTTGGATTGAGTCGTTCATTCATGAAACTGGA
ATTCAAATGGATGACTTCTTGGCCACTAGTTTGATCGACCTTTATGCAAAATGTGGAAGT
ATTGATAAAGCTCACAAGCTGTTCCACGGCTTGAAAAAGAAAGATTTGGTAGCATATACT
GCCATGATACTGGGATGTGGAATAAATGGTAGGGCTAATGATGCCATCAAGTTGTTTGAT
GAGATGATGAATGCTGAAATTAACCCAAACATAGTCACAATCACAGGGATATTGACTGCC
TACAGTCACATTGGAATGGTAGAAGAAGCATACCGTTGTTTTATTTCCTTACAGAAGTAT
GGTCTTTCTCCCTCAGTTGACCATTACGCTATAGTAGTTGACCTTTTAAGTAGGGCAGGG
CGGTTAGAAGAAGCACATGGGTTGATTAAAAGCATGTCAATACAGCCTCATGCTGGTGTG
TGGGGTGCATTGCTTCTTGGTTGCAGTTTGCATAACAATTTAGAGCTTGGAGAGATCGCA
GCGACACGTTGTATAGAGTTGGAACCTGACAGTTCTGGATATCTTTCTCTTCTTGCAAAT
ATTTATGCTTCTTCGGGAAGGTGGGATGATGCTGAGAGGTTGAGAAAAGGTGTTGAAGAA
AAGGGATACAACAAATTGCCTGGTTGCAGTTGGATGGAAGAAGTAAAAGCTTAG