Plant GARDEN How To ▶︎

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Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g006120.2.1

CDS Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)

Sequence

ATGTGTGATATCAAGAAGGAAACTTTACTTAACAAAAACAAGGAAATTGAAAGAACAGTA
TCAAATGCCTATGATGAATTACGAAGTTTCAGAACATGGTTGAAATGGATGTGTGTGGAT
CAATCCAACGCGTTTTCTGCTTTTCTTTCTTGGTTTGTTTTCATACTGTTAGCTGTAATC
GTCCCTTGCCTTTCACATTTTCTTCTGGCAATGGACGATAGTGATGCTGCACACAGTCGT
CCATATGACGACGTTGTGCAGCTATCACTTAGCAGTGTTGCTGCTTTGTCATTTGTTTGT
CTTTCTCAGTTTGTTAAGAAATATGGTCTGAGAAGGTTTTTGTTCCTTGATAAGCTTTGT
GATGAAAGTGAAACAGTTAGAAGAGGCTACACTGAACAGCTCAATAGTTCACTAAAGATC
TTATTCATATTTGTCCTGCCATGTTTTGCTGTTGAATGCGCGTACAAGATTTGGTGGTAC
AGTTCGGGTGGTACACGAATCCCCTTCTTGGGCAACGTCATTGTGAGTGACACTGTCGCG
TGCATTCTAGAGCTGAGTTCTTGGCTTTACAGGACGGTCGTGTTCTTCCTAGTCTGTATA
CTTTTCCGGTTGATATGTTACCTTCAAATTCTCCGTCTACAAGATTTTGCTCAGGTGTTT
CACGTGGATTCTGATGTTGAATCGGTGTTGAGAGAGCACCTGAGAATTAGGAGGCACTTG
AGGATCATTAGCCATAGGTACCGGTCATTTATCTTGTGGGCATTGATGCTCGTTACAGCA
AGCCAATTCGCGTCCCTTCTCATGACCACACGCTCAACTGCAGATCTTCATATTTATGAA
AGTGGTGAACTCGCGCTCTGCTCTGTCAGCCTTCTTGCCGGGCTGATGATACTGTTGCGA
AGTGCAACCAGAATTACACACAAGGCTCAATCCGTTACGTGCCTTGCAGCCAAGTGGCAC
GTATGTGCAACGATAGACTCATTTGATTCAACTGAGGCTGATACACCAATTACTCGAGCG
ACCTGTGACCACATTTTTCCTGTATGTTCTGAAGGATCATCTGATGCTGATGATGTTGGA
GATGAAGAAGACGAGTTGGACAATACGAAATTCGTCCATGCATATGCGTATAGCACAATT
TCATTCCAAAAAAGACAGGCATTAGTGACATATTTTGAGAACAATAGAGCAGGAGTAACA
ATTTATGGATTCATGCTGGATAGAAGTTCTATTCACACTATATTTGGGATTGAATTATCA
CTAGTTCTTTGGTTGCTTGGGAAAACCATTGGCATTTCTTGA

Peptide Sequence

PEP ID

Solyc10g006120.2.1

PEP Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)

Sequence

MCDIKKETLLNKNKEIERTVSNAYDELRSFRTWLKWMCVDQSNAFSAFLSWFVFILLAVI
VPCLSHFLLAMDDSDAAHSRPYDDVVQLSLSSVAALSFVCLSQFVKKYGLRRFLFLDKLC
DESETVRRGYTEQLNSSLKILFIFVLPCFAVECAYKIWWYSSGGTRIPFLGNVIVSDTVA
CILELSSWLYRTVVFFLVCILFRLICYLQILRLQDFAQVFHVDSDVESVLREHLRIRRHL
RIISHRYRSFILWALMLVTASQFASLLMTTRSTADLHIYESGELALCSVSLLAGLMILLR
SATRITHKAQSVTCLAAKWHVCATIDSFDSTEADTPITRATCDHIFPVCSEGSSDADDVG
DEEDELDNTKFVHAYAYSTISFQKRQALVTYFENNRAGVTIYGFMLDRSSIHTIFGIELS
LVLWLLGKTIGIS*

Transcript Sequence

Transcript ID

Solyc10g006120.2.1

Transcript Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)

Sequence

TACCAAACTAATTTAAGAAGTAAAAATCTCATTGATTGGAAGAATCCAGAACCATTATGC
ATAGTATATTAACTTTCTATTATAAAAGGATACTACACTCACTGTCTTCTCTACAAGTTT
CCATTGCCTTTTTTTTTTCTTCTTTTTGCTTTTAAAAAAATTATTCCTTTCTTCTTCGAT
CTCCATCACCAAATCAACTTACTCTTATTTTACACTGCAATTTCCTTCGACGAAAAATTA
TATTGTAGAATATATAACTATTGAAGCAAAAATTCTAGTGCAGCACAAAGGAATTCAAAA
ATTGCTTTGGATTACACATTCAAATCTCAGGTATCTCTAACTCTGTCTACTCATAATTTA
AACAGGAAAAAAAACAAACAGAGATACACAGAACTTCTTGTACAAAATGTGTGATATCAA
GAAGGAAACTTTACTTAACAAAAACAAGGAAATTGAAAGAACAGTATCAAATGCCTATGA
TGAATTACGAAGTTTCAGAACATGGTTGAAATGGATGTGTGTGGATCAATCCAACGCGTT
TTCTGCTTTTCTTTCTTGGTTTGTTTTCATACTGTTAGCTGTAATCGTCCCTTGCCTTTC
ACATTTTCTTCTGGCAATGGACGATAGTGATGCTGCACACAGTCGTCCATATGACGACGT
TGTGCAGCTATCACTTAGCAGTGTTGCTGCTTTGTCATTTGTTTGTCTTTCTCAGTTTGT
TAAGAAATATGGTCTGAGAAGGTTTTTGTTCCTTGATAAGCTTTGTGATGAAAGTGAAAC
AGTTAGAAGAGGCTACACTGAACAGCTCAATAGTTCACTAAAGATCTTATTCATATTTGT
CCTGCCATGTTTTGCTGTTGAATGCGCGTACAAGATTTGGTGGTACAGTTCGGGTGGTAC
ACGAATCCCCTTCTTGGGCAACGTCATTGTGAGTGACACTGTCGCGTGCATTCTAGAGCT
GAGTTCTTGGCTTTACAGGACGGTCGTGTTCTTCCTAGTCTGTATACTTTTCCGGTTGAT
ATGTTACCTTCAAATTCTCCGTCTACAAGATTTTGCTCAGGTGTTTCACGTGGATTCTGA
TGTTGAATCGGTGTTGAGAGAGCACCTGAGAATTAGGAGGCACTTGAGGATCATTAGCCA
TAGGTACCGGTCATTTATCTTGTGGGCATTGATGCTCGTTACAGCAAGCCAATTCGCGTC
CCTTCTCATGACCACACGCTCAACTGCAGATCTTCATATTTATGAAAGTGGTGAACTCGC
GCTCTGCTCTGTCAGCCTTCTTGCCGGGCTGATGATACTGTTGCGAAGTGCAACCAGAAT
TACACACAAGGCTCAATCCGTTACGTGCCTTGCAGCCAAGTGGCACGTATGTGCAACGAT
AGACTCATTTGATTCAACTGAGGCTGATACACCAATTACTCGAGCGACCTGTGACCACAT
TTTTCCTGTATGTTCTGAAGGATCATCTGATGCTGATGATGTTGGAGATGAAGAAGACGA
GTTGGACAATACGAAATTCGTCCATGCATATGCGTATAGCACAATTTCATTCCAAAAAAG
ACAGGCATTAGTGACATATTTTGAGAACAATAGAGCAGGAGTAACAATTTATGGATTCAT
GCTGGATAGAAGTTCTATTCACACTATATTTGGGATTGAATTATCACTAGTTCTTTGGTT
GCTTGGGAAAACCATTGGCATTTCTTGAACTATTATTAGCTACACGCTATGTTGCTCGGA
TTTTACACACCTGGTGATATTTTTGAAGAGTCCTAGCAACATAGTCAGTCAAAACCGGAC
TTTTTGACGTGTTGGAGTATAAAGACTAGTGCTAGCCTCTAGGCTCTGATTCATTCTTCT
TCATTTCATCATTTTGTTGTGTTGTTCTGATCATAGGTCTAGCGAGCTATTTAATTGATT
GTTCAAATTTTATATCATTTATGATATCATATATTTTTTTTAATT