Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc10g005490.3.1
CDS Infomation	RING/FYVE/PHD zinc finger protein (AHRD V3.3 *** A0A072TQ60_MEDTR)
Sequence	ATGGGACAGCAATCGGTGCCGACACCTTCAGTTAATCTTCCATCTCTACCACCACCGTCG GCGAGTAGTTCAGATAGTGGAGGAGGTTGTCAAGTTCGATGTGCTGGTTGTAAGATGATT TTGACAGTCGCTCCCGGACTGACAGAGTTTATATGCCCTACTTGTCAATTGCCGCAGATG CTACCTCCGGAACTCATGCCTCAGCAGCAGCGAAGCAGTGCCCTGGCTCATGGAATTGAT CCTACCAAGATCCAGTTGCCCTGCGCTCACTGCAAAGCTATACTCAATGTCCCTCACGGC CTGTCTCGCTTCTCCTGCCCTCAATGTGGGATCGACCTTGCCGTTGATGTATCTAAGATT AGGCAATTTCTTCCTCAGTCGTCATCGAATCCTGCTGCTCCCCGTCCCCCTGCGCCACCT CTGCCTGAGGAAGAAGTCAATGAGGTGGCCATTGAAGTAGAACGTGAAGAAGACGAGGGT GGCATGGTTGGAGAAACTTTTATGGACTACCGGCCTCCCAAGCTATCTATTGGACCTCCG CATCCTGATCCTATCGTGGAGACATCTTCCTTATCTGCAGTACAACCACCTGAACCCACC TATGATCTTACGATCAAAGAGGACTTGGAAAGCTCTAAAACATTGTCCTGCCTGCAAATT GAGACATTGGTTTATGCTTGTCAGAGACACCTTCAGTTCCTTCCAAATGGTACTAGAGCA GGATTTTTTGTCGGTGATGGTGCTGGTGTGGGGAAAGGACGAACAATTGCTGGACTAATA TGGGAGAATTGGCACCATGATAGAAGGAAAGCATTGTGGATTTCTGTTGGTTCGGATTTG AAATTTGATGCAAGACGAGACATGGATGATGTGGGAGCTACATGTGTAGAAGTGCATGCT TTGAACAAGCTACCTTATTCTAAGCTTGACTCAAAGTCTGTTGGCGTCAGGGAGGGAGTT GTTTTTTCAACATACAGCAGTCTGATAGCATCTTCGGAGAAAGGTCGGTCCCGTTTGCAG CAGCTTGTACAGTGGTGTGGGCCAGAATTTGATGGTCTTGTCATATTTGATGAGTGTCAC AAGGCAAAAAATTTGGTCCCTGAAGCTGGGGGACAGCCAACTCGAACTGGTGAAGCTGTA CTTGAAATCCAGGCTCGTCTTCCTCAAGCTCGTGTTGTTTATTGTTCAGCAACTGGTGCT TCTGAGCCTCGCAATATGGCCTACATGGTTCGCCTTGGGCTTTGGGGAGCTGGAACTTCT TTTCTTAATTTCCGTGACTTCTTAGTTGCTATGGAGAAAGGTGGTGTGGGGGCACTTGAA CTTGTTGCCATGGACATGAAAACAAGGGGTATGTATGTGTGTCGTACACTTAGCTACAAA GGTGCAGAGTTTGAAGTAGTTGAAGTACCTTTAGAGGCCCAGATGCAGGACTTGTATAAA AAAGCTGCTGAATTCTGGGCGGAGCTTAGAGTGGAATTGCTGTCAGCTGGTGCATTTCTC ACTGATGATAAGCCCTCTTCTAATCAGCTCTGGAGACTTTATTGGGCTAATCATCAGCGC TTCTTTAGACACTTGTGTATATCCGCTAAGGTGCCTGCAGTAGTTAGAATCGCAAAGGAA GCATTGACTGAAGGTAAATGTGTGGTCATAGGGCTTCAAAGCACTGGAGAAGCAAGAACT GAGGAAGCTGTTTCGAAATATGGTCTTGAACTTGATGATTTTGTTTCTGGACCTCGTGAG TTGTTACTTAAATTTGTAGAAGAGAATTATCCATTGCCTGAAGAACCTGAACCACTTCCT GATGAAAGTGTCAAAGAGCTTCAGCGAAAGAGACACTCTGCAACACCTGGTGTATCAATT AGAGGGAGAGTGAGAAAAGTTGCTAAATGGCAAACGGGTGATCAGATGAGTGATGAAGAA TCAGATACTGATTCTGAATATGAATCTACCGAGTCCGATGACGATGAATTTCAGATCTGT GATGTTTGTAGTTCGGAGGAGGAGAGGAAAAAATTGCTCCAGTGTTCCTGTTGTAGCCAA CTTATACATCCAGCATGTTTAGTTCCACCTGTTACAGAGCCAGTTTCTGCGGATTGGTGT TGCCACTCTTGCAAGGAAAAGACAGATGAATACATACAAGCAAGACATGCCTATGTTGCG GAACTATCAAAAAGGTATGAAGGAGCTCTGGAGAGAAGGTCCAAGATTTTGGATATAATT CGTTCTTTGGATCTTCCAAACAATCCGTTGGATGATATTATCGACCAGCTTGGGGGCCCG GAGAAAGTGGCAGAAATAACAGGGAGAAAAGGCATGCTTGTGAGGGCCGCTAATGGAAAA GGTGTCACCTATCAGGCGCGAAATACGAAGGATGTAAGCATGGAAATGGTCAATATACAT GAGAAACAGCTCTTCATGGAAGGGAAGAAGCTGGTAGCTATAATATCTGAAGCTGGATCA GCTGGTGTTTCTCTGCAAGCTGATAGAAGGGCCTTAAACCAGAGAAGAAGGGTCCATTTG ACTCTGGAGTTACCTTGGAGTGCTGATCGGGCAATTCAGCAGTTTGGAAGAACTCATCGC TCTAATCAAGCTTCTGCACCCGAGTATAAGCTACTATTTACTAATCTTGGCGGCGAACGG CGGTTTGCATCCGTTGTTGCCAAGAGACTTGAATCACTTGGGGCATTGACTCAGGGAGAT CGTCGAGCTGGACCATCTCTTAGTGCTTATAACTACGATAGTTCCTATGGGAAAAGAGCC CTTGTGATGTTGTATAGAGGGATCATGGAGCAGGATCCTTTTCCACTTGTACCACCAGGT TGTTCTGCTGATATACCGGATGCTATACAGGATTTTATTTTGAAGGGGAAAGCTGCACTT GTTTCTGTTGGAATAATAAGAGACTCGGTTCTAGGTAATGGAAAGGATTCTGGGAAGCTT TCTGGCCGTATAGTTGATTCAGACATGCATGATGTTGGGCGTTTCCTTAACAGGCTCTTG GGGTTGCCACCTGAGATCCAAAATAGGTTATTTGAGTTATTTGTCAGCATTCTTGATCTT TTAGTTCAGAATGCACGTCTTGAAGGACATTTAGACTCTGGAATTGTTGAAGTGAAAGCT ACCACTGTTGAACTACAAGGGACGCCAAAGACTGTTCATGTTGACAACTTGTCTGGTGCT TCAACCATATTGTTCACTTTTACATTGGACCGTGGATTGATGTGGGAGTGTGCATATGCG TTGCTTGAGGAGAAGCAAAAGGATGAGTCTAGCTCAACTTATAATGGATTCTATGAATCC AAACGAGAATGGTTGGGAAGACGACATTTTTTGTTAGCATTTGAAGGTTCTGCTTCAGGA ATGTATAAGGTATTTCGTCCTACTGTTGGAGAGGCCCTAAGGGAGATGCCACTTGTAGAA TTGAAAGACAAGTACCGGAAACTATCATCCTTAGAAAAGGCTCGTCGTGGATGGGAAGAC GAATACGAAGTTTCATTGAAACAGTGCATGCATGGCCCAAAATGTAAGCTAGGCAGTTTC TGCACAGTTGGTCGAAGAGTACAGGAAGTGAATGTATTAGGTGGGCTTATACTTCCTGTG TGGGGAACTGTTGAGAAGGCGCTCTCTAAGCAAGCTCGCCAAAGCCATCGAAGAATCCGC ATTGTACAGATTGTAACAACTACTGACAATCAACGGATTGTAGGGTTGCTTATCCCAAAT GCAGCAGTAGAAGCAGTGCTTCAAGATTTGGCATGGGTTCAAGATGTTGATGAATGA

Peptide Sequence

PEP ID	Solyc10g005490.3.1
PEP Infomation	RING/FYVE/PHD zinc finger protein (AHRD V3.3 *** A0A072TQ60_MEDTR)
Sequence	MGQQSVPTPSVNLPSLPPPSASSSDSGGGCQVRCAGCKMILTVAPGLTEFICPTCQLPQM LPPELMPQQQRSSALAHGIDPTKIQLPCAHCKAILNVPHGLSRFSCPQCGIDLAVDVSKI RQFLPQSSSNPAAPRPPAPPLPEEEVNEVAIEVEREEDEGGMVGETFMDYRPPKLSIGPP HPDPIVETSSLSAVQPPEPTYDLTIKEDLESSKTLSCLQIETLVYACQRHLQFLPNGTRA GFFVGDGAGVGKGRTIAGLIWENWHHDRRKALWISVGSDLKFDARRDMDDVGATCVEVHA LNKLPYSKLDSKSVGVREGVVFSTYSSLIASSEKGRSRLQQLVQWCGPEFDGLVIFDECH KAKNLVPEAGGQPTRTGEAVLEIQARLPQARVVYCSATGASEPRNMAYMVRLGLWGAGTS FLNFRDFLVAMEKGGVGALELVAMDMKTRGMYVCRTLSYKGAEFEVVEVPLEAQMQDLYK KAAEFWAELRVELLSAGAFLTDDKPSSNQLWRLYWANHQRFFRHLCISAKVPAVVRIAKE ALTEGKCVVIGLQSTGEARTEEAVSKYGLELDDFVSGPRELLLKFVEENYPLPEEPEPLP DESVKELQRKRHSATPGVSIRGRVRKVAKWQTGDQMSDEESDTDSEYESTESDDDEFQIC DVCSSEEERKKLLQCSCCSQLIHPACLVPPVTEPVSADWCCHSCKEKTDEYIQARHAYVA ELSKRYEGALERRSKILDIIRSLDLPNNPLDDIIDQLGGPEKVAEITGRKGMLVRAANGK GVTYQARNTKDVSMEMVNIHEKQLFMEGKKLVAIISEAGSAGVSLQADRRALNQRRRVHL TLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKRLESLGALTQGD RRAGPSLSAYNYDSSYGKRALVMLYRGIMEQDPFPLVPPGCSADIPDAIQDFILKGKAAL VSVGIIRDSVLGNGKDSGKLSGRIVDSDMHDVGRFLNRLLGLPPEIQNRLFELFVSILDL LVQNARLEGHLDSGIVEVKATTVELQGTPKTVHVDNLSGASTILFTFTLDRGLMWECAYA LLEEKQKDESSSTYNGFYESKREWLGRRHFLLAFEGSASGMYKVFRPTVGEALREMPLVE LKDKYRKLSSLEKARRGWEDEYEVSLKQCMHGPKCKLGSFCTVGRRVQEVNVLGGLILPV WGTVEKALSKQARQSHRRIRIVQIVTTTDNQRIVGLLIPNAAVEAVLQDLAWVQDVDE*

Transcript Sequence

Transcript ID	Solyc10g005490.3.1
Transcript Infomation	RING/FYVE/PHD zinc finger protein (AHRD V3.3 *** A0A072TQ60_MEDTR)
Sequence	GTCATTCTTAATACATTAGGGGTAACTTTAGCCATTTTCCATTCTTTTATGGGCCAAACA ACTCAAATAAAAACTCACTCGTCCATTTATCTGTGTAAAGTATTGCGACTCGCCGGAAGC GGGAGCATCAGCCCCAAAGCCCATGAATTAAGGACAACCCAAAACTCACCGGACATCGCC GGCCTCCTCCGCCGGCTGTTTAGTTGACGGAAACTTCTGTTCTCGCATCGTCACTACTGA ATTCAGTCACAACATTTCAGTACATTTTGATTTCAACGTTTGTTAATACATATAGTAATA ATATGGGACAGCAATCGGTGCCGACACCTTCAGTTAATCTTCCATCTCTACCACCACCGT CGGCGAGTAGTTCAGATAGTGGAGGAGGTTGTCAAGTTCGATGTGCTGGTTGTAAGATGA TTTTGACAGTCGCTCCCGGACTGACAGAGTTTATATGCCCTACTTGTCAATTGCCGCAGA TGCTACCTCCGGAACTCATGCCTCAGCAGCAGCGAAGCAGTGCCCTGGCTCATGGAATTG ATCCTACCAAGATCCAGTTGCCCTGCGCTCACTGCAAAGCTATACTCAATGTCCCTCACG GCCTGTCTCGCTTCTCCTGCCCTCAATGTGGGATCGACCTTGCCGTTGATGTATCTAAGA TTAGGCAATTTCTTCCTCAGTCGTCATCGAATCCTGCTGCTCCCCGTCCCCCTGCGCCAC CTCTGCCTGAGGAAGAAGTCAATGAGGTGGCCATTGAAGTAGAACGTGAAGAAGACGAGG GTGGCATGGTTGGAGAAACTTTTATGGACTACCGGCCTCCCAAGCTATCTATTGGACCTC CGCATCCTGATCCTATCGTGGAGACATCTTCCTTATCTGCAGTACAACCACCTGAACCCA CCTATGATCTTACGATCAAAGAGGACTTGGAAAGCTCTAAAACATTGTCCTGCCTGCAAA TTGAGACATTGGTTTATGCTTGTCAGAGACACCTTCAGTTCCTTCCAAATGGTACTAGAG CAGGATTTTTTGTCGGTGATGGTGCTGGTGTGGGGAAAGGACGAACAATTGCTGGACTAA TATGGGAGAATTGGCACCATGATAGAAGGAAAGCATTGTGGATTTCTGTTGGTTCGGATT TGAAATTTGATGCAAGACGAGACATGGATGATGTGGGAGCTACATGTGTAGAAGTGCATG CTTTGAACAAGCTACCTTATTCTAAGCTTGACTCAAAGTCTGTTGGCGTCAGGGAGGGAG TTGTTTTTTCAACATACAGCAGTCTGATAGCATCTTCGGAGAAAGGTCGGTCCCGTTTGC AGCAGCTTGTACAGTGGTGTGGGCCAGAATTTGATGGTCTTGTCATATTTGATGAGTGTC ACAAGGCAAAAAATTTGGTCCCTGAAGCTGGGGGACAGCCAACTCGAACTGGTGAAGCTG TACTTGAAATCCAGGCTCGTCTTCCTCAAGCTCGTGTTGTTTATTGTTCAGCAACTGGTG CTTCTGAGCCTCGCAATATGGCCTACATGGTTCGCCTTGGGCTTTGGGGAGCTGGAACTT CTTTTCTTAATTTCCGTGACTTCTTAGTTGCTATGGAGAAAGGTGGTGTGGGGGCACTTG AACTTGTTGCCATGGACATGAAAACAAGGGGTATGTATGTGTGTCGTACACTTAGCTACA AAGGTGCAGAGTTTGAAGTAGTTGAAGTACCTTTAGAGGCCCAGATGCAGGACTTGTATA AAAAAGCTGCTGAATTCTGGGCGGAGCTTAGAGTGGAATTGCTGTCAGCTGGTGCATTTC TCACTGATGATAAGCCCTCTTCTAATCAGCTCTGGAGACTTTATTGGGCTAATCATCAGC GCTTCTTTAGACACTTGTGTATATCCGCTAAGGTGCCTGCAGTAGTTAGAATCGCAAAGG AAGCATTGACTGAAGGTAAATGTGTGGTCATAGGGCTTCAAAGCACTGGAGAAGCAAGAA CTGAGGAAGCTGTTTCGAAATATGGTCTTGAACTTGATGATTTTGTTTCTGGACCTCGTG AGTTGTTACTTAAATTTGTAGAAGAGAATTATCCATTGCCTGAAGAACCTGAACCACTTC CTGATGAAAGTGTCAAAGAGCTTCAGCGAAAGAGACACTCTGCAACACCTGGTGTATCAA TTAGAGGGAGAGTGAGAAAAGTTGCTAAATGGCAAACGGGTGATCAGATGAGTGATGAAG AATCAGATACTGATTCTGAATATGAATCTACCGAGTCCGATGACGATGAATTTCAGATCT GTGATGTTTGTAGTTCGGAGGAGGAGAGGAAAAAATTGCTCCAGTGTTCCTGTTGTAGCC AACTTATACATCCAGCATGTTTAGTTCCACCTGTTACAGAGCCAGTTTCTGCGGATTGGT GTTGCCACTCTTGCAAGGAAAAGACAGATGAATACATACAAGCAAGACATGCCTATGTTG CGGAACTATCAAAAAGGTATGAAGGAGCTCTGGAGAGAAGGTCCAAGATTTTGGATATAA TTCGTTCTTTGGATCTTCCAAACAATCCGTTGGATGATATTATCGACCAGCTTGGGGGCC CGGAGAAAGTGGCAGAAATAACAGGGAGAAAAGGCATGCTTGTGAGGGCCGCTAATGGAA AAGGTGTCACCTATCAGGCGCGAAATACGAAGGATGTAAGCATGGAAATGGTCAATATAC ATGAGAAACAGCTCTTCATGGAAGGGAAGAAGCTGGTAGCTATAATATCTGAAGCTGGAT CAGCTGGTGTTTCTCTGCAAGCTGATAGAAGGGCCTTAAACCAGAGAAGAAGGGTCCATT TGACTCTGGAGTTACCTTGGAGTGCTGATCGGGCAATTCAGCAGTTTGGAAGAACTCATC GCTCTAATCAAGCTTCTGCACCCGAGTATAAGCTACTATTTACTAATCTTGGCGGCGAAC GGCGGTTTGCATCCGTTGTTGCCAAGAGACTTGAATCACTTGGGGCATTGACTCAGGGAG ATCGTCGAGCTGGACCATCTCTTAGTGCTTATAACTACGATAGTTCCTATGGGAAAAGAG CCCTTGTGATGTTGTATAGAGGGATCATGGAGCAGGATCCTTTTCCACTTGTACCACCAG GTTGTTCTGCTGATATACCGGATGCTATACAGGATTTTATTTTGAAGGGGAAAGCTGCAC TTGTTTCTGTTGGAATAATAAGAGACTCGGTTCTAGGTAATGGAAAGGATTCTGGGAAGC TTTCTGGCCGTATAGTTGATTCAGACATGCATGATGTTGGGCGTTTCCTTAACAGGCTCT TGGGGTTGCCACCTGAGATCCAAAATAGGTTATTTGAGTTATTTGTCAGCATTCTTGATC TTTTAGTTCAGAATGCACGTCTTGAAGGACATTTAGACTCTGGAATTGTTGAAGTGAAAG CTACCACTGTTGAACTACAAGGGACGCCAAAGACTGTTCATGTTGACAACTTGTCTGGTG CTTCAACCATATTGTTCACTTTTACATTGGACCGTGGATTGATGTGGGAGTGTGCATATG CGTTGCTTGAGGAGAAGCAAAAGGATGAGTCTAGCTCAACTTATAATGGATTCTATGAAT CCAAACGAGAATGGTTGGGAAGACGACATTTTTTGTTAGCATTTGAAGGTTCTGCTTCAG GAATGTATAAGGTATTTCGTCCTACTGTTGGAGAGGCCCTAAGGGAGATGCCACTTGTAG AATTGAAAGACAAGTACCGGAAACTATCATCCTTAGAAAAGGCTCGTCGTGGATGGGAAG ACGAATACGAAGTTTCATTGAAACAGTGCATGCATGGCCCAAAATGTAAGCTAGGCAGTT TCTGCACAGTTGGTCGAAGAGTACAGGAAGTGAATGTATTAGGTGGGCTTATACTTCCTG TGTGGGGAACTGTTGAGAAGGCGCTCTCTAAGCAAGCTCGCCAAAGCCATCGAAGAATCC GCATTGTACAGATTGTAACAACTACTGACAATCAACGGATTGTAGGGTTGCTTATCCCAA ATGCAGCAGTAGAAGCAGTGCTTCAAGATTTGGCATGGGTTCAAGATGTTGATGAATGAA AGAAGTGTAATTAAAATTGTGTCAAGAATATATGATTACAAAAGTTTCTGGAATAGCCTG GCAAGATGCAGTTTCAGTAAGAAGCTAGCTCCCCCTGCATTTTATGGTTGTAGAGAAGCA GTCTTGGTTACAAAATCCGTTGAATGAGAATGAGCACCATAGAGTACCTTTCAAAATTCT TTTTTGCATCATAGTTTTTAGATATCGATTCCTTGTAAATCAGATTTAAGAAAGATTTTT TTTTTTCTTAATCAATTTAGTGGAGTGATTATTTGAATTTTGAGATCGTTTGATAGAATG GAATCTCCAGGATCTTTGAGTATTGTTTATCACATGAAATGATTATATAATGTTAAATTT CCGTTTCATGATCGAAATCC