Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g005120.2.1
CDS Infomation

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT4G16330.2)
Sequence

ATGGAGACTCTGAGAGTACAATTATTGGCTGAAAAAAGTGAGATCTCAGTACCATCACAG
TACGTACAACCACCGGAAACCAGACCACAAATAGAAAAAACTAACGTAAAATCAGCAGTA
CCAGTAATCGATCTCAATTCACGAACGAACCTCCTGGATGAACTGAAGAAAGCTTGCAAA
GAATGGGGAGTATTTCAAGTGATAAACCATAAGGTTCCGATTAGTTTGTTGGATGATATA
ATGCGTGTTGGTCGCACCTTTTTTGGAGGTTGCGAAATGGAAGAGAAGCTTAAGTATTCT
TGCGATTCTGCTTCTCCTGCTTCTGAAGGATATGGCAGTCGCATGCTTGTAGCATCAAAT
GAAACGGTTTTGGATTGGAGAGATTATTTTGATCACCACACCTTGCCTTTATCTCGTCGC
AATACTTCTCATTGGCCCGACTCTCCAGCTGATTACAGAAAAGTTGTGGCAGAATACAGC
GATCACATGAAAGCTCTTGCACAGGAACTTCTTGGTTTAGTCTCTGAGAGTCTAGACTTG
ACATGTCAGTGTATAGAAAATGTTGTTGGGGAGTTTTACCAAAATATCACTATTAGTTAC
TATCCACCCTGCCCTCAACCGGAGCTTACTCTTGGACTGCAATCACATTCTGACTTTGGT
GTTATTACACTTCTCATCCAAGATGACGTGGGGGGTCTTGAGGTTTTCAATAATGGAGAA
TGGGTTTCTGTTAATCCAATGTCAAATGCTATCTGTGTGATCTTAGCAGACCAAACTGAG
ATCATAACTAATGGCGAGTATAAAAGTGCTCAACACCGGGCAGTGACAAATGCTGGAAGA
TCCCGACTCTCAATTGCCACATTCCATGACCCTGCCAAAACCAGGCAAATTTCTCCAGTC
TTCCATCCGCCTAGACATCGTCCAGTGATTTATGGCGACCATGTCTCCTCATGGTACACT
AAAGGGCCAGAAGGGAAGAGGAACCTTGATGCACTTCTACTTTAA

Peptide Sequence

PEP ID

Solyc10g005120.2.1
PEP Infomation

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT4G16330.2)
Sequence

METLRVQLLAEKSEISVPSQYVQPPETRPQIEKTNVKSAVPVIDLNSRTNLLDELKKACK
EWGVFQVINHKVPISLLDDIMRVGRTFFGGCEMEEKLKYSCDSASPASEGYGSRMLVASN
ETVLDWRDYFDHHTLPLSRRNTSHWPDSPADYRKVVAEYSDHMKALAQELLGLVSESLDL
TCQCIENVVGEFYQNITISYYPPCPQPELTLGLQSHSDFGVITLLIQDDVGGLEVFNNGE
WVSVNPMSNAICVILADQTEIITNGEYKSAQHRAVTNAGRSRLSIATFHDPAKTRQISPV
FHPPRHRPVIYGDHVSSWYTKGPEGKRNLDALLL*

Transcript Sequence

Transcript ID

Solyc10g005120.2.1
Transcript Infomation

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT4G16330.2)
Sequence

GAAACGTGAGAAATTTACCGAGCTAACGCCAGCAGCAAAAAAGGGGATAGGACCAGGTTT
AGTATTTCCATTATCAACTGGCCTAGCAGCTCGATAAGCTTCAGGAGGCATAACACCATA
AACAACAGAAACATTAACACCAGCCTTCTCAAAAACATTCCCATCTTGCAATACCCTACT
AATCCCACCACCCCCACCAGGCCTGGACCAAACATCTTCCTTGAATTTACCCCCTCCATC
TACATCTTCCAAAGCAGCACAAACACTGTCTTGAACCTCCCTAATCATCTTCTCAAAACG
TGCTCTAACCGAATTCGACTCATCCCCCGATGACCCTTCATCAGATTCTCTTAGAAATGT
ATGTGGTCGTTCAGTTTCTGGGGTTTCCTTCTCAATCATCCTTGATGACACTTGGACTTT
GATGGAGCAGTTGTTGTGTGTTGATTTTTTACTTGTGCTTCTGCATCCAATGGTAAGTGG
AAGTGATGAAAGATTGGCTACTGATGAAAGAGAGGAATATCTGAGTGGGAAAGTGGAAGT
GGAAGAGGATGAAGGAGAGGACAGAACTGCAGAAAACATTGTAGATGAAGAAAATTTGAG
AGAAAAATGAGGAAGTAGTTGCTTAAATTAGATTTATAAAGGGTATGACCAATGGGGAGA
TAAGAAATAGATTATTGGGATAAGAAATTACCTTACAAAGGGATATACCCAACTTTGCTA
GTATTATATTTGGATGGAAAAAAAAAGAATTAAGTATATATTCAAACTTTAATCAAAATT
CTTGTCTACTATTATATTGATGTTATAATTTGTCAAATAGTAAATTTTATAATCAACATT
TTCTCTTAAGCTTGCACTAAGTATATCGAGCTTGATTTTTACTTTGTCAAAAAAAAATAG
CTTTAAATTTTTTTTAAATTAGCTATATTAGCTGCTCTGTAAATCAAGTGACAAATACAT
TCACAAAGAAGTGATTCCAATTCTCATTTATAAACTTATTATATAAATCACAATTATCAT
ATGTTTTGAAAAAAATAATTTAGATATAAATGAGTGATAATTTATGCAAATATTCGGACA
TTATTTTCTTACTAAATACACTACACTTGCAATGTCATCTTGTATACCTTTGTATCAACA
TTATTATTTTTGCAATAAGAAATAACTCTGTGGAGTTCTTTTGCCTTTGACCTAAAAGTT
TGTGGGCTAAATTGTAACCAAAAGAAAATAATGGACCTTTTCATAAAAGTGATTTTCTCG
GGAAAGTGTACAAAATTTGACGTGATTAATTCCAGATTCAAGTTCAATCCTCCACCGCGC
ACGGCCGTTCCCAGTGACCGTCTCACCTCAATCACCAGTCCTCAACCACTGAATTTCAAT
ATTCCGATCATTCCTAACTTTTACGATTTGTCACTTAAAACTCATGGAGACTCTGAGAGT
ACAATTATTGGCTGAAAAAAGTGAGATCTCAGTACCATCACAGTACGTACAACCACCGGA
AACCAGACCACAAATAGAAAAAACTAACGTAAAATCAGCAGTACCAGTAATCGATCTCAA
TTCACGAACGAACCTCCTGGATGAACTGAAGAAAGCTTGCAAAGAATGGGGAGTATTTCA
AGTGATAAACCATAAGGTTCCGATTAGTTTGTTGGATGATATAATGCGTGTTGGTCGCAC
CTTTTTTGGAGGTTGCGAAATGGAAGAGAAGCTTAAGTATTCTTGCGATTCTGCTTCTCC
TGCTTCTGAAGGATATGGCAGTCGCATGCTTGTAGCATCAAATGAAACGGTTTTGGATTG
GAGAGATTATTTTGATCACCACACCTTGCCTTTATCTCGTCGCAATACTTCTCATTGGCC
CGACTCTCCAGCTGATTACAGAAAAGTTGTGGCAGAATACAGCGATCACATGAAAGCTCT
TGCACAGGAACTTCTTGGTTTAGTCTCTGAGAGTCTAGACTTGACATGTCAGTGTATAGA
AAATGTTGTTGGGGAGTTTTACCAAAATATCACTATTAGTTACTATCCACCCTGCCCTCA
ACCGGAGCTTACTCTTGGACTGCAATCACATTCTGACTTTGGTGTTATTACACTTCTCAT
CCAAGATGACGTGGGGGGTCTTGAGGTTTTCAATAATGGAGAATGGGTTTCTGTTAATCC
AATGTCAAATGCTATCTGTGTGATCTTAGCAGACCAAACTGAGATCATAACTAATGGCGA
GTATAAAAGTGCTCAACACCGGGCAGTGACAAATGCTGGAAGATCCCGACTCTCAATTGC
CACATTCCATGACCCTGCCAAAACCAGGCAAATTTCTCCAGTCTTCCATCCGCCTAGACA
TCGTCCAGTGATTTATGGCGACCATGTCTCCTCATGGTACACTAAAGGGCCAGAAGGGAA
GAGGAACCTTGATGCACTTCTACTTTAATTGTTAACTCTCTTTCTGCAATTATTCATTCA
AAATGTAGAAAAAAGTGATCTCTGTGTTATACTTTGACCAACATTTATGAAGATAGTTAG
ATCAAGATGGACTAAACACCTCAACTTAACACAACTTTTGTTCATTTTTCTCTAAAGATA
TCAATAAATATTCACAAACAAGTTTTCTTCCCTATTACCCTACAATTTATGTAGTCCAAA
ATGGTTTTAAGAAAAGCTTTTTGAATATATTATTGCAATTGAACATCTCTATGCAGCCCC
ATGGGGCGTGAATTTTTTGAGCACGAATAGGACCCTACGTAGCGCGAATTCAAATTAGTC
AGGGCCTCGATGAAAAAAATAATATGTATACCATGTGCATACTATGATGTTCGAAATACA
ATAAATAAGTGTATCAAACACCATATAATTAATGTTATATAAAATTGCTACAATATAGTT
TCTCTCTCTTATTCTCCATTGTGAAGCTTCTATTCATAAGTCATTATCATTGATATACAT
TTTTTTAACTTTCTTCAATAATTCACAACTGATTATCAGTGATTTTTTAATTACTTTTAA
CGGACATGTTTTCTTCATTAATGTTACTTTATTCATTTATTGTTTTCTTAATTGATGTTA
CCTTTGCTCGTCATCACCTCTTTCTGTCATTATATATTTCATTTTGGGCCTTATGGGCCG
AATTTATTCATTTGTAATAGATCAAAACAAATTCAATAAAATACGACCTTGTTCAAACTG
ATACCCGACCCAAATAAGTAAAATATATATCGTACTGAAATATAAG