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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc10g005110.3.1
CDS Infomation

Coproporphyrinogen III oxidase (AHRD V3.3 *** AT1G03475.1)
Sequence

ATGTTTTCTGCAGTTCTGTCCTCTCCTTCATCCTCTTCCACTTCCACTTTCCCACTCAGA
TATTCCTCTCTTTCATCAGTAGCCAATCTTTCATCACTTCCACTTACCATTGGATGCAGA
AGCACAAGTAAAAAATCAACACACAACAACTGCTCCATCAAAGTCCAAGTGTCATCAAGG
ATGATTGAGAAGGAAACCCCAGAAACTGAACGACCACATACATTTCTAAGAGAATCTGAT
GAAGGGTCATCGGGGGATGAGTCGAATTCGGTTAGAGCACGTTTTGAGAAGATGATTAGG
GAGGTTCAAGACAGTGTTTGTGCTGCTTTGGAAGATGTAGATGGAGGGGGTAAATTCAAG
GAAGATGTTTGGTCCAGGCCTGGTGGGGGTGGTGGGATTAGTAGGGTATTGCAAGATGGG
AATGTTTTTGAGAAGGCTGGTGTTAATGTTTCTGTTGTTTATGGTGTTATGCCTCCTGAA
GCTTATCGAGCTGCTAGGCCAGTTGATAATGGAAATACTAAACCTGGTCCTATCCCCTTT
TTTGCTGCTGGCGTTAGCTCGGTTATACATCCAAAAAACCCCTTTGCACCAACTGTACAT
TTCAATTATCGCTACTTCGAGACTGATGCTCCTAAAGATACTCCAGGAGCACCTAGGCAA
TGGTGGTTTGGAGGTGGCACTGATCTGACACCTGCTTACATTTTCGAGGAGGATGTGAAG
CACTTCCATTCGGTGCAAAAAGGTGCTTGTGACAAATTTGATGCTAGTTTCTACCCTCGT
TTCAAGAAGTGGTGTGATGATTATTTCTATATAAAGCACCGTGATGAGAGGCGAGGTCTT
GGAGGAATTTTTTTTGACGATTTAAACGACTATGATCAGGAGATGCTTCTCTCCTTTTCT
ACAGAGTGTGCCAATTCCGTCATTCCAGCATATATACCTATCATAGAGAAGAGGAAGGAT
ACCCCATTCACCGATGAACACAAGGCATGGCAACAGTTACGGAGGGGGCGCTATGTGGAA
TTCAACTTGGTTTATGACCGTGGAACTACATTTGGTCTCAAGACAGGAGGTAGGATTGAG
AGTATTCTTGTTTCTCTTCCATTAAGTGCACGTTGGGAGTACGACCATCAACCAGTAGAG
GGGTCTGAAGAATGGAAACTCTTGGATGCTTGTATCAACCCTAAGGAATGGATCTGTTAG

Peptide Sequence

PEP ID

Solyc10g005110.3.1
PEP Infomation

Coproporphyrinogen III oxidase (AHRD V3.3 *** AT1G03475.1)
Sequence

MFSAVLSSPSSSSTSTFPLRYSSLSSVANLSSLPLTIGCRSTSKKSTHNNCSIKVQVSSR
MIEKETPETERPHTFLRESDEGSSGDESNSVRARFEKMIREVQDSVCAALEDVDGGGKFK
EDVWSRPGGGGGISRVLQDGNVFEKAGVNVSVVYGVMPPEAYRAARPVDNGNTKPGPIPF
FAAGVSSVIHPKNPFAPTVHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVK
HFHSVQKGACDKFDASFYPRFKKWCDDYFYIKHRDERRGLGGIFFDDLNDYDQEMLLSFS
TECANSVIPAYIPIIEKRKDTPFTDEHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIE
SILVSLPLSARWEYDHQPVEGSEEWKLLDACINPKEWIC*

Transcript Sequence

Transcript ID

Solyc10g005110.3.1
Transcript Infomation

Coproporphyrinogen III oxidase (AHRD V3.3 *** AT1G03475.1)
Sequence

AATTTTCTTCATCTACAATGTTTTCTGCAGTTCTGTCCTCTCCTTCATCCTCTTCCACTT
CCACTTTCCCACTCAGATATTCCTCTCTTTCATCAGTAGCCAATCTTTCATCACTTCCAC
TTACCATTGGATGCAGAAGCACAAGTAAAAAATCAACACACAACAACTGCTCCATCAAAG
TCCAAGTGTCATCAAGGATGATTGAGAAGGAAACCCCAGAAACTGAACGACCACATACAT
TTCTAAGAGAATCTGATGAAGGGTCATCGGGGGATGAGTCGAATTCGGTTAGAGCACGTT
TTGAGAAGATGATTAGGGAGGTTCAAGACAGTGTTTGTGCTGCTTTGGAAGATGTAGATG
GAGGGGGTAAATTCAAGGAAGATGTTTGGTCCAGGCCTGGTGGGGGTGGTGGGATTAGTA
GGGTATTGCAAGATGGGAATGTTTTTGAGAAGGCTGGTGTTAATGTTTCTGTTGTTTATG
GTGTTATGCCTCCTGAAGCTTATCGAGCTGCTAGGCCAGTTGATAATGGAAATACTAAAC
CTGGTCCTATCCCCTTTTTTGCTGCTGGCGTTAGCTCGGTTATACATCCAAAAAACCCCT
TTGCACCAACTGTACATTTCAATTATCGCTACTTCGAGACTGATGCTCCTAAAGATACTC
CAGGAGCACCTAGGCAATGGTGGTTTGGAGGTGGCACTGATCTGACACCTGCTTACATTT
TCGAGGAGGATGTGAAGCACTTCCATTCGGTGCAAAAAGGTGCTTGTGACAAATTTGATG
CTAGTTTCTACCCTCGTTTCAAGAAGTGGTGTGATGATTATTTCTATATAAAGCACCGTG
ATGAGAGGCGAGGTCTTGGAGGAATTTTTTTTGACGATTTAAACGACTATGATCAGGAGA
TGCTTCTCTCCTTTTCTACAGAGTGTGCCAATTCCGTCATTCCAGCATATATACCTATCA
TAGAGAAGAGGAAGGATACCCCATTCACCGATGAACACAAGGCATGGCAACAGTTACGGA
GGGGGCGCTATGTGGAATTCAACTTGGTTTATGACCGTGGAACTACATTTGGTCTCAAGA
CAGGAGGTAGGATTGAGAGTATTCTTGTTTCTCTTCCATTAAGTGCACGTTGGGAGTACG
ACCATCAACCAGTAGAGGGGTCTGAAGAATGGAAACTCTTGGATGCTTGTATCAACCCTA
AGGAATGGATCTGTTAGTTTCAATCCATGTAAAGTTTACTTGTTTTGGTCTTCTATATTT
GTTGTCTTTGCATTTCTTTGATTAGATTTCCTGTGTTTAGCCCCTTTCCTTTGGGGGTCA
TCCTGAGGGGATTGAGGAAGGATGGAAATGGTTGATGTAGAGGATATGTTAGAATCTGTA
ATGTTAACTAAAACTGAGGCTTTTAACCTAATGATGTGATGAGAGGAAAGTTTGTTATCT
TGACGTGTCTGATGCCAAAAACTGTCGATGATATGTATATATACAGATATTGGAAGCTCT
GATTGAGGAGAACATATTAGAATAGAGCAGAGACATATTGCCTCCTCAATCAACTTACAT
TACTTGTAAATGTGTCTTACCACAACCTTAGTCGTGTATTGTCTGTCCTCACACTGTACA
TATTAGACGATATAGTCTCCTTACACTTCCACTAGTAAGAATGATTTTATCGGGATGTAA
AGGCATAGATAGTAGCTATTGCAGAACAGGCCTCTGCTTGTTCACCCATGGATTCGGGGT
TTAGATGCAGTGAGTTCTGAGAAAATTCTGTCTGAACTTGTGTTAGTCAAAAGGCGCTTG
GCAGGACCAACAAGAGCAGTACTTCGGAAGTTTCAGGTTCGAGCCCCAAGTTAGGGAGTA
GTTCACCCTCCTTCCAGCTCAAATTAGACTTGGATAAGTGAGTGTTGAAGACCAATTAAA
TACGTTCAGTTTAGCTATCTCTGGAATTAAACATCCTTTCCACTTGTCATGCAGCAATCT
CAAATATCTTTGGTGGAAAAATGACAAAAAAGAAAATTATGTTCTTTTGTTATCCTTAAT
ATTAAAATTATTTATTTTTCAAGACTTGGAATTATATGTTAATATGAATATTGGTAAATT
ACTTGTACTAATCATTATTGTTTAAGAGGGCACGTGAAATTTAATGTGGACAAATAGACT
TGAGTAGAGGGAGTGCATAATACACTACACAAACTTTTTTTTATCTCACCGTAATTCGTT
ACTTAATCATGGTAAATCACGTGGTTTATTTATTAATTTTCTTATTTTGTTTTATTTTTA
ATTTGGTCACAAGTATGCTGGTAATTGCTATACTCACAGACCTTATCAGAAGCTAGAGGG
ATAGTTTCTTAT