Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g098150.3.1
CDS Infomation

Metacaspase (AHRD V3.3 *** K4CWY6_SOLLC),Pfam:PF00656
Sequence

ATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGA
GGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCT
GAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGG
AATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTT
GTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACT
GGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGATGATGATTTTAGA
GAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCAC
AGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGAT
GACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAA
GATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAA
GAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTG
AAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAG
GATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCA
AGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAG
CAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAA
CAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAA
GGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTC
GTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCT
TATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACC
AATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGC
CCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGA

Peptide Sequence

PEP ID

Solyc09g098150.3.1
PEP Infomation

Metacaspase (AHRD V3.3 *** K4CWY6_SOLLC),Pfam:PF00656
Sequence

MAKKAVLIGINYPGTKAELRGCINDVKRMYNCLLNRYGFAEEDITVLIDTDDSYTQPTGR
NIRKALSDLVGSAESGDCLFVHYSGHGTRLPAETGEEDDTGFDECIVPCDMNLITDDDFR
ELVDKVPEGCQITIVSDSCHSGGLIDKAKEQIGESHKQGDDDEGHGSGFGFKNFLRRNVE
DAFESRGIHLPGRHHRREEEEENFAESSVIETEDGDQVHVKSKSLPLSTLIEILKQKTGK
DDIDVGKLRPTLFDVFGEDASPKVKKFMKIIFNKLQKNNEQGGGGGFMGMVGNLAQEFLK
QKLDENDESYAKPAMETHVEGKQEVYAGSGNRGLPDSGILVSGCQTDQTSADATPAGGES
YGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDHHVDAPFVC*

Transcript Sequence

Transcript ID

Solyc09g098150.3.1
Transcript Infomation

Metacaspase (AHRD V3.3 *** K4CWY6_SOLLC),Pfam:PF00656
Sequence

TTTAATTACTTATGTCCCACTAGCCTTTTGACTTAAAAAGATCTCAAATTATTCAATCAA
CAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATG
GCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGT
TGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAG
GAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAAT
ATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTG
CATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGT
TTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGATGATGATTTTAGAGAG
CTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGT
GGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGAC
GATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGAT
GCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAG
GAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAG
AGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGAT
GATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGT
CCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAG
GGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAG
AAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGT
AAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTC
AGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTAT
GGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAAT
GAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCA
GGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGA