Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g092150.1.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YJT4_CYNCS)
Sequence

ATGAACATGAAATTTGGATTTTTAACTGTCAATGGATTGGAAGATATGTTTATAGCTGTG
TTGAAAAACTGCAAGAGCTCAATTTTTTTGAAGAAAATTCATGCCCAAATTGTCAAGTTT
TCTCTTACACAAAGTAGTTACTTGGTGACCAAAATGGTTGAGATTTGTGACAAAATTGGA
GAAATAGAATATGCAAATTTGCTATTCAAACAAGTTGAACATCCAAATAACTATTTATAC
AACTCAATAATCAGAGCTTATACACATAAACATAGATATATTTCATGTATCAATGTATAT
AAGCAGATGATGACATGTGCAATTTCTCCCGATGAATATACGTATCCATTCGTTATTAGA
TCATGTAGTGCAATTTTGCGTGTTGATGTAGGTGAACAGTTTCATGTTCATGTATGCAAA
TTTGGACTGTATTGTAGTAATGTGATAGCGAATTCGTTATTGGATATGTATGTTAAATGT
GATCGAATGAGGGATGCACATATGGTGTTTGATGAAATGTCTGATAGAGATGTGATTTCG
TGGAATAGTTTAATTTGTGGACATGTAAGGTTGCGACAAGTGAGGAAGGCGAGAGCATTG
TTTGATGTAATGCCGGATAAGAGTATTGTTTCTTGGACTGCTATGATTTCAGGGTACACG
AAAACGGGGTGTTATGGAGATGCTTTGGATGTTTTTAGGAGGATGCAAATGGTTGGTGTG
AAACCGGATTGGATTAGTTTGGTTTCGGTTTTGCCTGCTTGTGCGCAACTTGGAGCGCTT
GAGTTAGGGAAGTGGATTCATTTCTACGCGGACAAGTATGGGTATTTGAGGAAGACTTCT
GTTTGTAATGCGTTGATGGAAATGTACGCGAAATGTGGAAGTGTAAACGAGGCTTGGCAG
TTGTTTAATCAGATGTCTGAAAGAGACGTGATCTCCTGGAGTACGATGATTGGTGGCCTA
GCGAATCATGGTAGAGCTCAAGAAGCGTTGAAGTTGTTTCATGAAATGCAGAGGTCTGCT
GTTGAACCGAATGAGATCACGTTCGTTGGTCTTCTATGTGCTTGCGCGCATGCTGGTCTT
TGTGATGACGGTTTGAGGTACTTTGACTCCATGAAAAATGATTACAACATAGAGCCCGGG
ATAGAGCATTACGGTTGTTTGGTTGATATTCTTGGGCGTACAGGACGTCTTGAACGAGCT
CTTGCAATCATCAAGACCATGCCGGTTAAGCCCGACTCTGCAATTTGGGGTTCTCTGTTG
AGTTCTTGCAGAACTCATCGCAATCTTGAAATAGCAGTTATTGCAATGGAACATCTGTTA
GAGCTCGAACCTGAAGATACAGGGAACTACATTCTACTCGCTAACATTTATGCAGATCTC
GGAAAGTGGGATGGTGTATCAAGGATGCGGAAGTTCATTAGAAGTAAAAGCATGAAGAAA
ACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGAT
AATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAA
AGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGA

Peptide Sequence

PEP ID

Solyc09g092150.1.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YJT4_CYNCS)
Sequence

MNMKFGFLTVNGLEDMFIAVLKNCKSSIFLKKIHAQIVKFSLTQSSYLVTKMVEICDKIG
EIEYANLLFKQVEHPNNYLYNSIIRAYTHKHRYISCINVYKQMMTCAISPDEYTYPFVIR
SCSAILRVDVGEQFHVHVCKFGLYCSNVIANSLLDMYVKCDRMRDAHMVFDEMSDRDVIS
WNSLICGHVRLRQVRKARALFDVMPDKSIVSWTAMISGYTKTGCYGDALDVFRRMQMVGV
KPDWISLVSVLPACAQLGALELGKWIHFYADKYGYLRKTSVCNALMEMYAKCGSVNEAWQ
LFNQMSERDVISWSTMIGGLANHGRAQEALKLFHEMQRSAVEPNEITFVGLLCACAHAGL
CDDGLRYFDSMKNDYNIEPGIEHYGCLVDILGRTGRLERALAIIKTMPVKPDSAIWGSLL
SSCRTHRNLEIAVIAMEHLLELEPEDTGNYILLANIYADLGKWDGVSRMRKFIRSKSMKK
TPGCSLIEINSLVQEFLSGDNSKPFSKDIHEVLELLALHQSKENDLVDTTLEYLSP*

Transcript Sequence

Transcript ID

Solyc09g092150.1.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YJT4_CYNCS)
Sequence

ATGAACATGAAATTTGGATTTTTAACTGTCAATGGATTGGAAGATATGTTTATAGCTGTG
TTGAAAAACTGCAAGAGCTCAATTTTTTTGAAGAAAATTCATGCCCAAATTGTCAAGTTT
TCTCTTACACAAAGTAGTTACTTGGTGACCAAAATGGTTGAGATTTGTGACAAAATTGGA
GAAATAGAATATGCAAATTTGCTATTCAAACAAGTTGAACATCCAAATAACTATTTATAC
AACTCAATAATCAGAGCTTATACACATAAACATAGATATATTTCATGTATCAATGTATAT
AAGCAGATGATGACATGTGCAATTTCTCCCGATGAATATACGTATCCATTCGTTATTAGA
TCATGTAGTGCAATTTTGCGTGTTGATGTAGGTGAACAGTTTCATGTTCATGTATGCAAA
TTTGGACTGTATTGTAGTAATGTGATAGCGAATTCGTTATTGGATATGTATGTTAAATGT
GATCGAATGAGGGATGCACATATGGTGTTTGATGAAATGTCTGATAGAGATGTGATTTCG
TGGAATAGTTTAATTTGTGGACATGTAAGGTTGCGACAAGTGAGGAAGGCGAGAGCATTG
TTTGATGTAATGCCGGATAAGAGTATTGTTTCTTGGACTGCTATGATTTCAGGGTACACG
AAAACGGGGTGTTATGGAGATGCTTTGGATGTTTTTAGGAGGATGCAAATGGTTGGTGTG
AAACCGGATTGGATTAGTTTGGTTTCGGTTTTGCCTGCTTGTGCGCAACTTGGAGCGCTT
GAGTTAGGGAAGTGGATTCATTTCTACGCGGACAAGTATGGGTATTTGAGGAAGACTTCT
GTTTGTAATGCGTTGATGGAAATGTACGCGAAATGTGGAAGTGTAAACGAGGCTTGGCAG
TTGTTTAATCAGATGTCTGAAAGAGACGTGATCTCCTGGAGTACGATGATTGGTGGCCTA
GCGAATCATGGTAGAGCTCAAGAAGCGTTGAAGTTGTTTCATGAAATGCAGAGGTCTGCT
GTTGAACCGAATGAGATCACGTTCGTTGGTCTTCTATGTGCTTGCGCGCATGCTGGTCTT
TGTGATGACGGTTTGAGGTACTTTGACTCCATGAAAAATGATTACAACATAGAGCCCGGG
ATAGAGCATTACGGTTGTTTGGTTGATATTCTTGGGCGTACAGGACGTCTTGAACGAGCT
CTTGCAATCATCAAGACCATGCCGGTTAAGCCCGACTCTGCAATTTGGGGTTCTCTGTTG
AGTTCTTGCAGAACTCATCGCAATCTTGAAATAGCAGTTATTGCAATGGAACATCTGTTA
GAGCTCGAACCTGAAGATACAGGGAACTACATTCTACTCGCTAACATTTATGCAGATCTC
GGAAAGTGGGATGGTGTATCAAGGATGCGGAAGTTCATTAGAAGTAAAAGCATGAAGAAA
ACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGAT
AATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAA
AGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGA