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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g091830.3.1
CDS Infomation

plastid transcriptionally active 5 (AHRD V3.3 *** AT4G13670.1)
Sequence

ATGGCGTCTTCACTACCACTGAGTTTCCATATCATTACCTCAAATCTCCATAGCAACAAC
ACTTACACACCTAAATTCTTCTCTCTAAAAAACTCCTCGGCATCCGTTTCTGTATCTCAC
GTTTGCTACAGTGGTTCGCCGGAAAGGGAGGAGTCACGGTGGTTAAGGGAGGAGCAGCGG
TGGTTGAGGGAGGAGCAGCGGTGGTTGAGGGAGGAGAGAAGGTGGGAAGCGGAGCGAGAG
GCGTTGTTGGTTCAAATTCGGGAGTTAGAGCTTCGTGTTAAGGAGGTTGAGAGTAGTAGG
GATTCGCTTCTTCCAGAAGCTACTTCTGTAACGGAGACGGTAGCTAATATTGCTAAGTTA
TTGCAGCTGCTGAAGGAGGGAGAGGTGGGAAAGAATGTAACTGTGATTGCAGAAAGTGGG
TCGATTGCGTTGCCATTAGTTTTAGAAGAAGCAAAGCAAAACGAGGTTATTGTCAAGGAA
GAACCACAACAGGAGAAGGTGATTAGGGAAGTTCCTAAAGAATTGGAAGGAGAGGGTAAC
AAAGCCAAGAAGAGGCGGAGTTTGAAAAAGGGATCTGAAGGAGATGAAGTTCGACTGATG
CAGGAACAATTGTTAAAACTGGGCTTTTATTGTGGTGAGGAAGATATGGAGTTCTCCAGC
TTCTCTAGTGGGACTGAGCGTGCTGTGAAAACTTGGCAGGCTTCATCTGATTTACGAGAA
GACGGCATTATGACTTCTGAACTTCTTGAAAAGTTATATATGGTGCAAAATATTGAGAGA
GTGAAGGAAAATCCCAAACAACCAGATGGAACTGAAGCTAAGACTAGTGCAAATGGTGCA
CCCATTACATCTATAATGGAAATAGAGGAAGTTCAACAGACCATTGTGAAAGAAGATGGT
GTATCTGAAACTGAGGTTTCACACCATCGAGTTTTTCTCCTAGGAGAGAACCGATGGGAA
GAACCTTCCAGACTTTCTTCAAGTAAGAAACCAGCAGAGACTAGTAGCGCCAGTACCACC
ATCAAGTGTATTACTTGTCGTGGAGAGGGTCGCGTATTATGCATGGAATGTGATGGTACT
GGTGAACCAAACATTGAGGAACAGTTTATGGAATGGATTGATGAAGGAATGAAGTGTCCT
TATTGTGAAGGCCATGGATTCTTAACTTGCGATGTTTGTCAAGGCAATAAGATAATGCAA
GCTTAG

Peptide Sequence

PEP ID

Solyc09g091830.3.1
PEP Infomation

plastid transcriptionally active 5 (AHRD V3.3 *** AT4G13670.1)
Sequence

MASSLPLSFHIITSNLHSNNTYTPKFFSLKNSSASVSVSHVCYSGSPEREESRWLREEQR
WLREEQRWLREERRWEAEREALLVQIRELELRVKEVESSRDSLLPEATSVTETVANIAKL
LQLLKEGEVGKNVTVIAESGSIALPLVLEEAKQNEVIVKEEPQQEKVIREVPKELEGEGN
KAKKRRSLKKGSEGDEVRLMQEQLLKLGFYCGEEDMEFSSFSSGTERAVKTWQASSDLRE
DGIMTSELLEKLYMVQNIERVKENPKQPDGTEAKTSANGAPITSIMEIEEVQQTIVKEDG
VSETEVSHHRVFLLGENRWEEPSRLSSSKKPAETSSASTTIKCITCRGEGRVLCMECDGT
GEPNIEEQFMEWIDEGMKCPYCEGHGFLTCDVCQGNKIMQA*

Transcript Sequence

Transcript ID

Solyc09g091830.3.1
Transcript Infomation

plastid transcriptionally active 5 (AHRD V3.3 *** AT4G13670.1)
Sequence

AGCTTCCCGCTACTTAAAAATATCTCTGATTAGTTTTTTCATATAAATAAATAAAAACCG
TTAAAACTGAAAACAGAAAAAATCTGTTAAAAGTTTTCACATCCATGGCGTCTTCACTAC
CACTGAGTTTCCATATCATTACCTCAAATCTCCATAGCAACAACACTTACACACCTAAAT
TCTTCTCTCTAAAAAACTCCTCGGCATCCGTTTCTGTATCTCACGTTTGCTACAGTGGTT
CGCCGGAAAGGGAGGAGTCACGGTGGTTAAGGGAGGAGCAGCGGTGGTTGAGGGAGGAGC
AGCGGTGGTTGAGGGAGGAGAGAAGGTGGGAAGCGGAGCGAGAGGCGTTGTTGGTTCAAA
TTCGGGAGTTAGAGCTTCGTGTTAAGGAGGTTGAGAGTAGTAGGGATTCGCTTCTTCCAG
AAGCTACTTCTGTAACGGAGACGGTAGCTAATATTGCTAAGTTATTGCAGCTGCTGAAGG
AGGGAGAGGTGGGAAAGAATGTAACTGTGATTGCAGAAAGTGGGTCGATTGCGTTGCCAT
TAGTTTTAGAAGAAGCAAAGCAAAACGAGGTTATTGTCAAGGAAGAACCACAACAGGAGA
AGGTGATTAGGGAAGTTCCTAAAGAATTGGAAGGAGAGGGTAACAAAGCCAAGAAGAGGC
GGAGTTTGAAAAAGGGATCTGAAGGAGATGAAGTTCGACTGATGCAGGAACAATTGTTAA
AACTGGGCTTTTATTGTGGTGAGGAAGATATGGAGTTCTCCAGCTTCTCTAGTGGGACTG
AGCGTGCTGTGAAAACTTGGCAGGCTTCATCTGATTTACGAGAAGACGGCATTATGACTT
CTGAACTTCTTGAAAAGTTATATATGGTGCAAAATATTGAGAGAGTGAAGGAAAATCCCA
AACAACCAGATGGAACTGAAGCTAAGACTAGTGCAAATGGTGCACCCATTACATCTATAA
TGGAAATAGAGGAAGTTCAACAGACCATTGTGAAAGAAGATGGTGTATCTGAAACTGAGG
TTTCACACCATCGAGTTTTTCTCCTAGGAGAGAACCGATGGGAAGAACCTTCCAGACTTT
CTTCAAGTAAGAAACCAGCAGAGACTAGTAGCGCCAGTACCACCATCAAGTGTATTACTT
GTCGTGGAGAGGGTCGCGTATTATGCATGGAATGTGATGGTACTGGTGAACCAAACATTG
AGGAACAGTTTATGGAATGGATTGATGAAGGAATGAAGTGTCCTTATTGTGAAGGCCATG
GATTCTTAACTTGCGATGTTTGTCAAGGCAATAAGATAATGCAAGCTTAGTTTCCAAATT
TTGATTCTTCACCTTTAGAGGTAAATTGTATACGTCACAAAAAATGATTCTCAATGAGTA
TCGAAGATTTATACAGATGCTAATGTTGTAAATTATGTTACATCAAATATATATCTTTAG
ATTAAGATTCTTCTATCCCGAGTAAAACTTAGACAAATAGATTGAAAAGGCAAAGTAATG
CTATTCTCA