Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g091790.3.1
CDS Infomation

E3 ubiquitin-protein ligase PRT1-like protein (AHRD V3.3 *** A0A0B0PZL6_GOSAR)
Sequence

ATGGAAAATGGCCATGAAGATCATGATGATACTCAAATTGAGGAAATCCCAGATGAATTT
CAGTGCTGTGTTTGCCTGGAACTTTTGTATAAACCAGTTGTGCTAGGGTGTGGCCACATT
GCTTGTTTCTGGTGTATATTCAAAGCTATGAATACTTGGAGGGAATCAAACTGTCCCATT
TGTCGACACCCATATCATCATTTTCCTAGTCTTTGTGGATTGATGCACTCTTTGCTTCTG
AAGTTGTACCCTTTAGCTAGTGCAAGAAGGGTAAAACAAGTAGCAGAGGAGGAGAAAGAA
GTAGGATCTTGCTCACCTGAGTTTGATGATGATTTATCAGAATCCGGCTGCAAGACAGAT
CATGTTCCGGACACTGCTTCACCTCATTCTGTCTCGTTGCAGAAATGTGGTTCAGTGGGA
GAAGGAGATCATTCCTCCGTAGATGTTTCATTAGATACAGTTGTTCCTGCAACATCGAGT
TCCGAAATCAGTAAGGACGCAATATCAAAGAATCTTAACTTTGCAGATGAACATACCAGT
GCAAGTGAAAAGCAGGTGCTTATGACAGATTTGCTTTGTGGTATCTGCGAGCTATTGTTA
TGCAAACCTGTTGTTCTTAATTGTGGCCATGTTTATTGTGAAAATTGTGTGATCAATCCT
AGCGACAAGCTTTGTAGATGTCCAGTTTGCCAACTGGAGCATCCAAATGGATTCCCCAAC
GTTTGTTTGATTCTTGAGCACTACCTGGAGGAGCAATTCCCGAAGTTGTATGGCGAAAGG
ATAAGGGCATCAGTGGAAAGATCTGATTGTCAGATTCCATCAAAACGAAATCGGGACGAA
GCTGCTGGCTGCAAATCAGTGCCTGGATTTGATCTTTCATCATGGTTAACGGGTGGAGGA
CCACAGGTTCATTTTGGAGTTGGTTGTGATTATTGTGGGATGTGTCCTATCGTTGGGGAG
CGATTCAAATGCAAAGACTGCACGGAGAAAATAGGCTTTGACCTTTGTGAAGGATGTTAT
AAAAGCTCGTCAAAGCTCCCGGGCAGATTTAACCAGCAACACACTCCAGAACACCAATTT
GAGTTAATACAGGCACTTCAAGTGAGAAATGTTGTACTGAGGGTTCAACCTGAACGATTA
GAAGGGGACAACTCCGATTTCCAACTTGAATACGGAGAGCCAAGGCCCCTTGAGCTGCTG
CCCCTGGAAGAAGATTCCTCAGAGACCAACTCACCTCGAGACAATCTAAGAGACGGTCAA
GGGGGGAACATATCCTCAAATGGTACTGGAGACAACGACGGAGGGAGAGAATCTGGAGAC
ACAGATTAG

Peptide Sequence

PEP ID

Solyc09g091790.3.1
PEP Infomation

E3 ubiquitin-protein ligase PRT1-like protein (AHRD V3.3 *** A0A0B0PZL6_GOSAR)
Sequence

MENGHEDHDDTQIEEIPDEFQCCVCLELLYKPVVLGCGHIACFWCIFKAMNTWRESNCPI
CRHPYHHFPSLCGLMHSLLLKLYPLASARRVKQVAEEEKEVGSCSPEFDDDLSESGCKTD
HVPDTASPHSVSLQKCGSVGEGDHSSVDVSLDTVVPATSSSEISKDAISKNLNFADEHTS
ASEKQVLMTDLLCGICELLLCKPVVLNCGHVYCENCVINPSDKLCRCPVCQLEHPNGFPN
VCLILEHYLEEQFPKLYGERIRASVERSDCQIPSKRNRDEAAGCKSVPGFDLSSWLTGGG
PQVHFGVGCDYCGMCPIVGERFKCKDCTEKIGFDLCEGCYKSSSKLPGRFNQQHTPEHQF
ELIQALQVRNVVLRVQPERLEGDNSDFQLEYGEPRPLELLPLEEDSSETNSPRDNLRDGQ
GGNISSNGTGDNDGGRESGDTD*

Transcript Sequence

Transcript ID

Solyc09g091790.3.1
Transcript Infomation

E3 ubiquitin-protein ligase PRT1-like protein (AHRD V3.3 *** A0A0B0PZL6_GOSAR)
Sequence

CCAGATAGCTCTGACGAACATATTCGATAAAACTTGATCCTTCAAGATGGAAAATGGCCA
TGAAGATCATGATGATACTCAAATTGAGGAAATCCCAGATGAATTTCAGTGCTGTGTTTG
CCTGGAACTTTTGTATAAACCAGTTGTGCTAGGGTGTGGCCACATTGCTTGTTTCTGGTG
TATATTCAAAGCTATGAATACTTGGAGGGAATCAAACTGTCCCATTTGTCGACACCCATA
TCATCATTTTCCTAGTCTTTGTGGATTGATGCACTCTTTGCTTCTGAAGTTGTACCCTTT
AGCTAGTGCAAGAAGGGTAAAACAAGTAGCAGAGGAGGAGAAAGAAGTAGGATCTTGCTC
ACCTGAGTTTGATGATGATTTATCAGAATCCGGCTGCAAGACAGATCATGTTCCGGACAC
TGCTTCACCTCATTCTGTCTCGTTGCAGAAATGTGGTTCAGTGGGAGAAGGAGATCATTC
CTCCGTAGATGTTTCATTAGATACAGTTGTTCCTGCAACATCGAGTTCCGAAATCAGTAA
GGACGCAATATCAAAGAATCTTAACTTTGCAGATGAACATACCAGTGCAAGTGAAAAGCA
GGTGCTTATGACAGATTTGCTTTGTGGTATCTGCGAGCTATTGTTATGCAAACCTGTTGT
TCTTAATTGTGGCCATGTTTATTGTGAAAATTGTGTGATCAATCCTAGCGACAAGCTTTG
TAGATGTCCAGTTTGCCAACTGGAGCATCCAAATGGATTCCCCAACGTTTGTTTGATTCT
TGAGCACTACCTGGAGGAGCAATTCCCGAAGTTGTATGGCGAAAGGATAAGGGCATCAGT
GGAAAGATCTGATTGTCAGATTCCATCAAAACGAAATCGGGACGAAGCTGCTGGCTGCAA
ATCAGTGCCTGGATTTGATCTTTCATCATGGTTAACGGGTGGAGGACCACAGGTTCATTT
TGGAGTTGGTTGTGATTATTGTGGGATGTGTCCTATCGTTGGGGAGCGATTCAAATGCAA
AGACTGCACGGAGAAAATAGGCTTTGACCTTTGTGAAGGATGTTATAAAAGCTCGTCAAA
GCTCCCGGGCAGATTTAACCAGCAACACACTCCAGAACACCAATTTGAGTTAATACAGGC
ACTTCAAGTGAGAAATGTTGTACTGAGGGTTCAACCTGAACGATTAGAAGGGGACAACTC
CGATTTCCAACTTGAATACGGAGAGCCAAGGCCCCTTGAGCTGCTGCCCCTGGAAGAAGA
TTCCTCAGAGACCAACTCACCTCGAGACAATCTAAGAGACGGTCAAGGGGGGAACATATC
CTCAAATGGTACTGGAGACAACGACGGAGGGAGAGAATCTGGAGACACAGATTAGGTAAA
CGTTACTTTGACAGTTGTGGTCACTATCTCAATCAGACCTCTGTGAATTAGGAATGAAGG
CCCTAACGACCCATATGTGAATGGCTTCTCTGGTCCTACTCTTAGTGGGATTTCACAGGG
AATATTGTTCTTGTTGTTATATACTGTACAGCTTTATATCGAGTATCAAAGTTACTACGC
GGTTGGACCTTTGTACATTGTATTCATATAATAATCGAAAAGAGAGTTATGCTTCATGCA
ATCTATTTGAAAGAGAAGATCTGATTCTTTATAAATGATTTACTGCTGTTTGAGTTTCTT
GTGTTCTAGACATGGCATCTGTAT