Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g090740.3.1
CDS Infomation

RNA helicase DEAD29
Sequence

CCTAAATGCTTGTTGCTAAACCCTGTGTTTGAGCTCTGTGTAGCAATGGCTTCTCAAATT
TCAGATAAAAAGAGAACAAAGAAAACAAAGAAACGAAGCAGAGTTGAATCAGAAGAATTT
GAGCGAATCAACTCACTTAATTGGAATCCAACACTTACAGAGAAAGATGATGCCTTCTCT
TTCCTTATTGGCTCGAATGAGCTTGAAGGAGGTTTTTTATGTCTTGAAGAGATCGATGAA
TCAGAGTACAATTTGGGTATTGCCAAATCATCTGGTGGAAGTGAAGAAAAGGGGAAGACA
AAACCGAAGAAACAGAAAGTAGATACAAAAAATGAGGAATTGAATGGTGAAGCTAAGGGT
GAGAGCAAAGAGGAGATTGAAGAGGTGGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAG
ATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAAT
GAAGAGCCGCCAGCTGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAA
ACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATAC
GCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCAC
CAAGGAAAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGT
CTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAA
AATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACT
CCTACAAGAGAGCTTGCCCTTCAGGTCACTGATCATCTGAAGGAAGCAGCAAAACATTCA
AATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAACAAGAAAGACTTTTG
AAAACAAGGCCTGAAATTGTTGTCGGAACTCCGGGGAGGCTTTGGGAGCTTATGTCTGGT
GGTGAAACTCATCTCGTGGAGTTGCACTCACTGTCATTTTTTGTGCTGGATGAGGCCGAT
CGGATGATAGAAAATGGCCATTTCCACGAGTTGCAGTCTATAGTTGACATGCTTCCTATG
GCTAATAAATCGACTGATGACGATTCTCAGAAATCACAAAATTGTGAAACAGTTTCCAGT
GTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGAT
TTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCA
ATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACT
AATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGACTGCAGGGATGAAGAT
AAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTC
TGTACGTCCATTGCAGCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAAT
GTCTGGACACTTCATGCCCAGATGCAACAGAGAGCTCGACTTAAGGCAATTGACCGGTTT
CGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATT
CCTGGTGTTCGAACCGTCATTCACTATCAGCTACCTCATTCAGCTGAAGTTTACGTTCAT
AGAAGTGGAAGAACTGCTAGGGCTCATTCTGATGGATGTAGCATTGCTCTAATCACACCA
AATGATACCTCAAAGTTTGCTGCTTTATGCAGGTCGTTTTCAAAGGATAACTTCCAGCGG
TTTCCCTTAGAAATGTCATACATGCCTGAAGTTATGAAGCGATTATCCCTTGCACGTCAA
ATAGACAAGATTTCCCGAAAGGACTCTCAGGACAAGGCCAAGAAAAATTGGCTTGAGCGA
AGTGCTGAATTAATGGAACTAGATTTGGAAGATAATGATAGTGAGGAGGAAAGAGTGAAC
AATCATAAGCGAAAGAAAGCCACATCTGCTCAACTAACTAATCTACAAGAGGAACTAAAA
AGTCTTCTTTCACGGCCATTGCAACCCAAAACATTCTCAAAACGCTACTTGGCTGGGGCT
GGTGTTTCACCTCTCCTTCAGAACCAGCTGGAGGAATTAGCTAGACAGAAAAATTCAAAT
AATTCCGGAGATGTTAAAAGGAAGAAAATGATCGTCATTGGTCAGGATTGTGTCGAGCCC
CTCCAGGCACTTAGGAGTGCTGGTCCAGAGACTAAGTTGAATCTGAAGGATATGGCTGAA
AAACGGAGAGATATAACCGAGTTAAGGAGAAAGAGGAGAGAAACCAAAAAACGTTTGCGC
GAACAACGACGAAAACAGAAGAAAAAACTTCAAGGAAAAGAGTGA

Peptide Sequence

PEP ID

Solyc09g090740.3.1
PEP Infomation

RNA helicase DEAD29
Sequence

PKCLLLNPVFELCVAMASQISDKKRTKKTKKRSRVESEEFERINSLNWNPTLTEKDDAFS
FLIGSNELEGGFLCLEEIDESEYNLGIAKSSGGSEEKGKTKPKKQKVDTKNEELNGEAKG
ESKEEIEEVEKETKQKKKKKMKKKKKDKINKDAVNEAEGNEEPPAVTDGNDDQEQDSVDE
TEYYAWNELRLHPLLMKSIYALKFKEPTPIQQACIPAGSHQGKDVVGAAETGSGKTLAFG
LPILQRLLEEREKAERQLPENGELDDKVASAGLLRALIITPTRELALQVTDHLKEAAKHS
NFRVVPIVGGMSSEKQERLLKTRPEIVVGTPGRLWELMSGGETHLVELHSLSFFVLDEAD
RMIENGHFHELQSIVDMLPMANKSTDDDSQKSQNCETVSSVQRKKRQTFVFSATIALSAD
FRKKLKRGSQKSKANDELNSIETLSERAGMRADAAIIDLTNASILANKLEESFIDCRDED
KDGYLYYILSVHGQGRTIVFCTSIAALRHISSLLRILGVNVWTLHAQMQQRARLKAIDRF
RGHEHGILIATDVAARGLDIPGVRTVIHYQLPHSAEVYVHRSGRTARAHSDGCSIALITP
NDTSKFAALCRSFSKDNFQRFPLEMSYMPEVMKRLSLARQIDKISRKDSQDKAKKNWLER
SAELMELDLEDNDSEEERVNNHKRKKATSAQLTNLQEELKSLLSRPLQPKTFSKRYLAGA
GVSPLLQNQLEELARQKNSNNSGDVKRKKMIVIGQDCVEPLQALRSAGPETKLNLKDMAE
KRRDITELRRKRRETKKRLREQRRKQKKKLQGKE*

Transcript Sequence

Transcript ID

Solyc09g090740.3.1
Transcript Infomation

RNA helicase DEAD29
Sequence

CCTAAATGCTTGTTGCTAAACCCTGTGTTTGAGCTCTGTGTAGCAATGGCTTCTCAAATT
TCAGATAAAAAGAGAACAAAGAAAACAAAGAAACGAAGCAGAGTTGAATCAGAAGAATTT
GAGCGAATCAACTCACTTAATTGGAATCCAACACTTACAGAGAAAGATGATGCCTTCTCT
TTCCTTATTGGCTCGAATGAGCTTGAAGGAGGTTTTTTATGTCTTGAAGAGATCGATGAA
TCAGAGTACAATTTGGGTATTGCCAAATCATCTGGTGGAAGTGAAGAAAAGGGGAAGACA
AAACCGAAGAAACAGAAAGTAGATACAAAAAATGAGGAATTGAATGGTGAAGCTAAGGGT
GAGAGCAAAGAGGAGATTGAAGAGGTGGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAG
ATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAAT
GAAGAGCCGCCAGCTGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAA
ACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATAC
GCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCAC
CAAGGAAAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGT
CTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAA
AATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACT
CCTACAAGAGAGCTTGCCCTTCAGGTCACTGATCATCTGAAGGAAGCAGCAAAACATTCA
AATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAACAAGAAAGACTTTTG
AAAACAAGGCCTGAAATTGTTGTCGGAACTCCGGGGAGGCTTTGGGAGCTTATGTCTGGT
GGTGAAACTCATCTCGTGGAGTTGCACTCACTGTCATTTTTTGTGCTGGATGAGGCCGAT
CGGATGATAGAAAATGGCCATTTCCACGAGTTGCAGTCTATAGTTGACATGCTTCCTATG
GCTAATAAATCGACTGATGACGATTCTCAGAAATCACAAAATTGTGAAACAGTTTCCAGT
GTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGAT
TTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCA
ATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACT
AATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGACTGCAGGGATGAAGAT
AAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTC
TGTACGTCCATTGCAGCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAAT
GTCTGGACACTTCATGCCCAGATGCAACAGAGAGCTCGACTTAAGGCAATTGACCGGTTT
CGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATT
CCTGGTGTTCGAACCGTCATTCACTATCAGCTACCTCATTCAGCTGAAGTTTACGTTCAT
AGAAGTGGAAGAACTGCTAGGGCTCATTCTGATGGATGTAGCATTGCTCTAATCACACCA
AATGATACCTCAAAGTTTGCTGCTTTATGCAGGTCGTTTTCAAAGGATAACTTCCAGCGG
TTTCCCTTAGAAATGTCATACATGCCTGAAGTTATGAAGCGATTATCCCTTGCACGTCAA
ATAGACAAGATTTCCCGAAAGGACTCTCAGGACAAGGCCAAGAAAAATTGGCTTGAGCGA
AGTGCTGAATTAATGGAACTAGATTTGGAAGATAATGATAGTGAGGAGGAAAGAGTGAAC
AATCATAAGCGAAAGAAAGCCACATCTGCTCAACTAACTAATCTACAAGAGGAACTAAAA
AGTCTTCTTTCACGGCCATTGCAACCCAAAACATTCTCAAAACGCTACTTGGCTGGGGCT
GGTGTTTCACCTCTCCTTCAGAACCAGCTGGAGGAATTAGCTAGACAGAAAAATTCAAAT
AATTCCGGAGATGTTAAAAGGAAGAAAATGATCGTCATTGGTCAGGATTGTGTCGAGCCC
CTCCAGGCACTTAGGAGTGCTGGTCCAGAGACTAAGTTGAATCTGAAGGATATGGCTGAA
AAACGGAGAGATATAACCGAGTTAAGGAGAAAGAGGAGAGAAACCAAAAAACGTTTGCGC
GAACAACGACGAAAACAGAAGAAAAAACTTCAAGGAAAAGAGTGA