Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g090460.3.1
CDS Infomation

Nucleolar GTP-binding protein 1 (AHRD V3.3 *** W9R5G2_9ROSA)
Sequence

ATGAGCGGCACTTCAGGTCTTCTTCAGCTATGGCAAGTTCCATCCTCATCACTGTTCTTC
GGCCGTTCCAAAGGTCTGTACTTGGTTCCTGTGCGTGTTATGTATCCAATGTCATGTTTC
TGTAAGCAAATGCAAACTACTACTTATGCAATTGTTAAAGGAAGCTATGTATCAAATCCA
CAGAACCAACAAGAAAACAAAGAAAAATTGACACCTAAGGTAGAAAATGTAGGTGCTTTT
CAAAAATTACCCATGGTAATGCCGTCTGTAGATATTCTACATTCAGCACTGAGGAAAGCA
AAGAGGGTCTCGCCTACAAAGGGCATTGCTAATGCTGCAAAACGTGAGAGAAATAAAGGC
GCAAAACAAATTGACGCATTAATGAAGGAGTTGGCTGTGCCCTTGAGGACATACAAAGAG
AACTTCCCAAACAAAAAATATTTGCACCCTTATGAAAGATCTTTGATTGAGTTAACGCTC
GGAGACGGAAACTATGAAGATGTATTGGGAAAGTTAGAAGCTCTAAGGAAAAAGGTGGTA
TCAGTTGGAAAGGAACATGCATCATTATGTGCTAAGTCATTATCTAAACGAGAAGCAGAG
GAGCGACTGAATGAGGGATTGAAAAGAATTGAGGAGATATTTGATGGCGATGGAAAAGCT
GTTGATGAACTATTGAACATTGCCAAGACATTACGGGCAATGCCAGTTGTCGATCTGGAA
ACACCAACTCTCTGTCTTGTCGGTGCTCCCAATGTCGGAAAATCATCTTTGGTTCGTGTA
CTTTCGACAGGGAAGCCTGAGATCTGCAACTATCCCTTCACTACTAGAGGAATTCTGATG
GGTCATATTAATTTGAGTTACCAGAATTTTCAGGTTACTGATACCCCTGGTATCTTAAGA
AGAGCTGATGAGGAAAGGAATAACTTGGAAAAGTTAACACTTGCTGTTCTCACTCATTTG
CCTACTGCAGTACTTTATGTTCATGATTTATCTGGAGAATGTGGGATGTCACCTTCTGAT
CAGTTTGTGATCTATAAGGAAATGCGAGAGAGATTCAGCAGCCATATTTGGCTTGATGTC
GTGTCCAAATGTGACTTACTGCAAGCATCTCCTGTCATCTTTGCAACAGATGATTGTAAT
GTTGATAACTTTGAGCTGGTGAGGTATAGGAAGATGGGACCTGATGGAGCCCTAAATGTG
TCGGTAAAGAATGAGATTGGTCTTCATGAGTTGAAGAAAAGAGTTTACGAGCTGCTTGTT
TCTCAATCAGAAAGGATCAAAAATCAACAGAGCAAGGAGGAAGAGCTGGAAGTTCCAAGC
TAG

Peptide Sequence

PEP ID

Solyc09g090460.3.1
PEP Infomation

Nucleolar GTP-binding protein 1 (AHRD V3.3 *** W9R5G2_9ROSA)
Sequence

MSGTSGLLQLWQVPSSSLFFGRSKGLYLVPVRVMYPMSCFCKQMQTTTYAIVKGSYVSNP
QNQQENKEKLTPKVENVGAFQKLPMVMPSVDILHSALRKAKRVSPTKGIANAAKRERNKG
AKQIDALMKELAVPLRTYKENFPNKKYLHPYERSLIELTLGDGNYEDVLGKLEALRKKVV
SVGKEHASLCAKSLSKREAEERLNEGLKRIEEIFDGDGKAVDELLNIAKTLRAMPVVDLE
TPTLCLVGAPNVGKSSLVRVLSTGKPEICNYPFTTRGILMGHINLSYQNFQVTDTPGILR
RADEERNNLEKLTLAVLTHLPTAVLYVHDLSGECGMSPSDQFVIYKEMRERFSSHIWLDV
VSKCDLLQASPVIFATDDCNVDNFELVRYRKMGPDGALNVSVKNEIGLHELKKRVYELLV
SQSERIKNQQSKEEELEVPS*

Transcript Sequence

Transcript ID

Solyc09g090460.3.1
Transcript Infomation

Nucleolar GTP-binding protein 1 (AHRD V3.3 *** W9R5G2_9ROSA)
Sequence

GTTATTGCAAATCCTTATTTTGTTAAAAGGGCGAGTACCACTACGGTCCACCGGTGCTAC
TCAGAGCTCAGCGCTAAGAGAGATATGAGCGGCACTTCAGGTCTTCTTCAGCTATGGCAA
GTTCCATCCTCATCACTGTTCTTCGGCCGTTCCAAAGGTCTGTACTTGGTTCCTGTGCGT
GTTATGTATCCAATGTCATGTTTCTGTAAGCAAATGCAAACTACTACTTATGCAATTGTT
AAAGGAAGCTATGTATCAAATCCACAGAACCAACAAGAAAACAAAGAAAAATTGACACCT
AAGGTAGAAAATGTAGGTGCTTTTCAAAAATTACCCATGGTAATGCCGTCTGTAGATATT
CTACATTCAGCACTGAGGAAAGCAAAGAGGGTCTCGCCTACAAAGGGCATTGCTAATGCT
GCAAAACGTGAGAGAAATAAAGGCGCAAAACAAATTGACGCATTAATGAAGGAGTTGGCT
GTGCCCTTGAGGACATACAAAGAGAACTTCCCAAACAAAAAATATTTGCACCCTTATGAA
AGATCTTTGATTGAGTTAACGCTCGGAGACGGAAACTATGAAGATGTATTGGGAAAGTTA
GAAGCTCTAAGGAAAAAGGTGGTATCAGTTGGAAAGGAACATGCATCATTATGTGCTAAG
TCATTATCTAAACGAGAAGCAGAGGAGCGACTGAATGAGGGATTGAAAAGAATTGAGGAG
ATATTTGATGGCGATGGAAAAGCTGTTGATGAACTATTGAACATTGCCAAGACATTACGG
GCAATGCCAGTTGTCGATCTGGAAACACCAACTCTCTGTCTTGTCGGTGCTCCCAATGTC
GGAAAATCATCTTTGGTTCGTGTACTTTCGACAGGGAAGCCTGAGATCTGCAACTATCCC
TTCACTACTAGAGGAATTCTGATGGGTCATATTAATTTGAGTTACCAGAATTTTCAGGTT
ACTGATACCCCTGGTATCTTAAGAAGAGCTGATGAGGAAAGGAATAACTTGGAAAAGTTA
ACACTTGCTGTTCTCACTCATTTGCCTACTGCAGTACTTTATGTTCATGATTTATCTGGA
GAATGTGGGATGTCACCTTCTGATCAGTTTGTGATCTATAAGGAAATGCGAGAGAGATTC
AGCAGCCATATTTGGCTTGATGTCGTGTCCAAATGTGACTTACTGCAAGCATCTCCTGTC
ATCTTTGCAACAGATGATTGTAATGTTGATAACTTTGAGCTGGTGAGGTATAGGAAGATG
GGACCTGATGGAGCCCTAAATGTGTCGGTAAAGAATGAGATTGGTCTTCATGAGTTGAAG
AAAAGAGTTTACGAGCTGCTTGTTTCTCAATCAGAAAGGATCAAAAATCAACAGAGCAAG
GAGGAAGAGCTGGAAGTTCCAAGCTAGTTCGTCTAGTGAAATTCCTACCAGATCTCTAAC
CTGCTGGTAATTAGCTGCAGGTTTTCGCGCTTGGTCCAAGAATATGACATGTTTCGACGC
GTATTTCTCGTGCAGTTGGACAATGAGGTGCTCTATAAGATACACAGATATTCAGATCAT
TTGTCAAATGGTGCAGATGGGGTTGCCATATTCTGTAAGTTTTAGTTATAGCAATCTTTG
ATAATTTTTCTTTGGAAAAATCTCTCAAATGCTTTTTAAATTTGATTTATTTTATCTTTT
TGTAAATGTTATTAAAAATTTCTCTTATTTAGTGGATGGAGATATACCATTTGAATTTTT
TTACAAGAACATATAAGCATTTATTTTTTCTGAAATAATGATGTTATAATGTGTCACAAT
TGTTAACATGGTGGTTACTATCATCTTCTCTAGACTCAATT