Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc09g090270.3.1
CDS Infomation	COP1-interacting-like protein (AHRD V3.3 *** G7I4V2_MEDTR)
Sequence	ATGAAGTCGAGTACTCGACTTGACTCAGTTGTTTTTCAGCTTACTCCTACTAGAACTAGG TGTGATCTTTTCATTATAGCCAATGACAAGAAAGAGAAAATAGCTTCTGGATTGCTTACT CCTTTTCTTGCTCACTTGAAAACTGCTCAGGATCAAATTGCAAAGGGTGGTTACTCAATT TTGCTGGAACCAGATGCTCACGCTGATGATTCATGGTTTACAAAGTGTACAGTGGAAAGG TTTGTCCGCTTTGTGAGCAATCCAGAGGTTTTGGAAAGGGTATACACCATTGAATCTGAG ATCTTGCAGATTGAGGAAGCAATAGCCCTTCAAGGAAACAATGATAGTGGGCAGGGGCCA GCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAGGTACTAAATCTACAGCAGAT GTCAATGAGGAGAAAGCTATTGTTCTTTACAAGCCGGGGGAAGATCAACCTCAAACAGAT TTGCAGGAAGAAAATTCAAGAGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGTCTGTG CTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATATTGAT CGTATGACACAGATGGTATCATTTTCCGAATCTTTTGGTGCCTCACGCTTAAGAGATGCA TGTGTAAGATTTATGGAGCTGTGGAAGAAAAAGCATGAAAATGGACAATGGGTTGAAATT GAAGCTGCAGAAGCAATGGCAAATCAATTAGACATTGCTGCAATGAATGCATCTGGAATT CTGCTCTCTAATATTGCTAATAAGCAATTTGATTCCAACAGCGAGATGGCTTCTGAGAAT TATGTGAAATCAAGCACAGATGGTAATTTAGGAGAAAGGCCTCCATTGGATCAACAAAGT CCAAATGGTCAACAACAATATCAATTTCTGCATCCAATGTATCCACCGTGGCCAATGCAT TCTCCTCCCTCTGGCGTACCTGCTTTTCAAGGATATCCCATGCAAGGAGTACCTTACTAT CCAGCTTATCCAGGAAATGGACATCTCTATCAACCTCCTTATCCAGGAATGGAAGACTCT CGAACGGGTGTCACTCCGCAGAGTAGAAAGAAAAAACAGTCTTCCGATAGGAGAGAGAGC AACAGCGATTCAGAGGAAGATGAAGAAATGGACAACGAAGGGTCTTATAGTCAGAGAAAG AAGGCTGGCCGGTCTAGGAAAAATCAATCAGGAAAGGTTGTTATACGTAACATTAATTAT ATCACTTCTAAAGCAAAGAACTCTAATGATAGCGAATCAGAAGCAGCTTCTGGTTCGGAA AATGGTGCTGATAGTGAAGATCTAGAAGGCAACGGTCACGACCTGGTGAAAAAGGGAACT TCACGGTCATCAAAAACAAGACGGAGCCGCACTGAATCAATTTTATATGATGATGACACT GTTTGTGAGAAGGAAGCTGATGGTGGGCACTGGCTGGCATTTCAAAATTGTTTATTGAAA GGTAATGAAGATGACAAAGATGGCATGTTCGCAATGGAGAAAGATGCAAGGAGGAGACTA AAAAGTACCATTTCCGATGATCCTTTGGCTATTGGTTCCCAAGACGGCATTGAAATGAAG GATAGGTTGAGTGATATGCATACAATTGGTGCAAAGATGTCTCGCATGTCTAGGGGTTCT AATGGTGAAGTCCTACTTTCTAGCAGAGGATATGATAATGGACAAGAACTTGGTGACCAC GTGGACATGCAGTTTACTGAGATAAATGGGAGAAAAATCATGCGTAGAACTGCAAATGAT GAATTTATGCTTAATGGTCGAGGAAATCAATCAGGGCTGAGAAATTCATTAGATCCGAAT GCATATGAGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATATGACTGATGAGTCT TTTGTAGTACCTTTTAGGTCAATGTCATTGACTGACGTTGGACCAGATGGTAGAACTGCC ATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGG ATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGG TTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCT TCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCA GAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGA CCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCT GAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAGGAAGAGGCA GACCAAAAGCGCATTGAAGCATTAAAACTGGAAAGGCAAAAGAGAATCGCATCCAGAGGT GGCCCCAGCTCTGGTCATTCTCCAGCACCAACAATCCAAACAAGAAAATTGCCAGCAAAA AGCTCTCCTGGCACCTTCAGGGGATCCAAGTTCAGTGACTCAGAGCCTGGATCCTTGTCA CCATTGCAAAGAACCAAAATAAGAACTCCGTTGGGGTCAAATGGTGTGCAGAAGGGCTCT AAAGCAAGCAAATCAACTGATGGCAGCAAATTGGCAGGTAACAAATTGAGTAGATCAGCA TCATCTTTGTCTGAACCAAAAAAAGAAAACAACGATGTTACTCCTGATTCAAAGGCATCC ATGGCACGAATAAGAAGACTATCAGAGCCCAAAGCAATCAGCAGCAAGCCTGGTACCTTA CGGAAGGCGCAAAGTGCTGAACTTGTATCAAAGCCCAAGGCTCGGAGTGCCGAACCAGTG TCTAAGACAAAGCGCTCTGATGTGCCAGAGAGCAAGAAAATATCTGCCATCATAGACCTT GACAAAAAGAAGGCTGCAACTCTTCCTGAGCTGAAAATCCGAACCACCAAAGAGTCGTCA GATTTACGACAAGACAAACTAACTGCGGAGAATATAGCTACGGAGAAGAATGACAGGCCT TCTGTAGCATCTGAAGGCATTGAATCATACAAGAATGATCTAGATGAAAACATTATTGAG AAAACTGTTGTTATGCTTGAGAAGGAGAAGAAACCCTCTTTGGCTGTTCCCAGTTCATCA TCAGAGAACTTGGCTGTGGAAGAATGTGACAAGATTAACAGTGTTGAGAGAACTGACTAT GCCTCTACACGTGACCCACCGTCACCCTTTGAAGGATTTATTAGAGCACCTGTTCCTAGC CGACTGCAAGAGCTGTCAAATTCCCATGAGACAGGGACGAATTGTGCAGATGACACACCC AAGTTTGCAAATATCGGAAGTACTGTTTATCGTGCTCCGTATGCTCGTGTCTCATCTGTC GAGGACCCTTGTACCAGAAACTTGGAGTTTGCTAAAGCACTTCCATCAAGCTCAGACACA GGATCAACAGTAAAAGAAATTGCCAAAGCTCATGCACCTGATATTCACACTGTTAGAGTA GATAACAATCCAGAAGCTGCAGAAAGGACTCAAGTGAAGGAATCACCAAAAGGTTTTAAA CGCCTCCTGAGGTTTGGAAAGAAGAACCACATCTCTGGAGGAGCAGAATCAAATGGCGCA AACATGAATAGCATGAAGCAGGATGATAGTGTCACAAATGCTCCCTTGCCTAGTGAAGTT TTCACTTTGAAGAATTTGATCTCCCAAGATGAAACCCCAACTGCTAGCAATGTTTCACAG AAGTCTCGTCTCTCTTTGTTATCTCCCTTTCGAAGCAAGACTAGCGAGAAAAGGTGA

Peptide Sequence

PEP ID	Solyc09g090270.3.1
PEP Infomation	COP1-interacting-like protein (AHRD V3.3 *** G7I4V2_MEDTR)
Sequence	MKSSTRLDSVVFQLTPTRTRCDLFIIANDKKEKIASGLLTPFLAHLKTAQDQIAKGGYSI LLEPDAHADDSWFTKCTVERFVRFVSNPEVLERVYTIESEILQIEEAIALQGNNDSGQGP AEYKEAKPAGNIAGTKSTADVNEEKAIVLYKPGEDQPQTDLQEENSRVQFLKVLETRKSV LQKEQGMAFARAVAAGFDIDRMTQMVSFSESFGASRLRDACVRFMELWKKKHENGQWVEI EAAEAMANQLDIAAMNASGILLSNIANKQFDSNSEMASENYVKSSTDGNLGERPPLDQQS PNGQQQYQFLHPMYPPWPMHSPPSGVPAFQGYPMQGVPYYPAYPGNGHLYQPPYPGMEDS RTGVTPQSRKKKQSSDRRESNSDSEEDEEMDNEGSYSQRKKAGRSRKNQSGKVVIRNINY ITSKAKNSNDSESEAASGSENGADSEDLEGNGHDLVKKGTSRSSKTRRSRTESILYDDDT VCEKEADGGHWLAFQNCLLKGNEDDKDGMFAMEKDARRRLKSTISDDPLAIGSQDGIEMK DRLSDMHTIGAKMSRMSRGSNGEVLLSSRGYDNGQELGDHVDMQFTEINGRKIMRRTAND EFMLNGRGNQSGLRNSLDPNAYEHTNKLDKASSHNMTDESFVVPFRSMSLTDVGPDGRTA INMDSELPLAHQKSENSSAGIMSYEPNDFSLMSERGTEKRLGLYDPALDYEMQVCNEGSA SKDKRKNGVSNDVKEGSKKSEKDRRSKATVDTSDKKRSGGPIRKGKMSKSSPLDDARARA ERIRSFKADMQKMKKEKEEADQKRIEALKLERQKRIASRGGPSSGHSPAPTIQTRKLPAK SSPGTFRGSKFSDSEPGSLSPLQRTKIRTPLGSNGVQKGSKASKSTDGSKLAGNKLSRSA SSLSEPKKENNDVTPDSKASMARIRRLSEPKAISSKPGTLRKAQSAELVSKPKARSAEPV SKTKRSDVPESKKISAIIDLDKKKAATLPELKIRTTKESSDLRQDKLTAENIATEKNDRP SVASEGIESYKNDLDENIIEKTVVMLEKEKKPSLAVPSSSSENLAVEECDKINSVERTDY ASTRDPPSPFEGFIRAPVPSRLQELSNSHETGTNCADDTPKFANIGSTVYRAPYARVSSV EDPCTRNLEFAKALPSSSDTGSTVKEIAKAHAPDIHTVRVDNNPEAAERTQVKESPKGFK RLLRFGKKNHISGGAESNGANMNSMKQDDSVTNAPLPSEVFTLKNLISQDETPTASNVSQ KSRLSLLSPFRSKTSEKR*

Transcript Sequence

Transcript ID	Solyc09g090270.3.1
Transcript Infomation	COP1-interacting-like protein (AHRD V3.3 *** G7I4V2_MEDTR)
Sequence	AGGTGATAATATATCGAATGGTGGAATCTTGTTCTTTGTTAGTATATAGTAAGTAGATTT TTCTCTCCACTGGGGGCATCCAAAGTTGCTCTCTTTCTTCGGATCCTTCACATATAGTGT GTGTTTGTGTGTTTTTTTGAGCTATATTGGGTGATGGGTCAGTGAGTTTTTCTGCATGTA AAGGTGGAATCTTGGTTTTGTTGAATGACATTTTGATTTGGCTTTAGGTTTTGTTGTTTC AAGATTTGGAAGCTTATTTTGAAGATCTAAGAGTTGGTGGTGAAGGAATTGGAAGTGCAA GAATCATGAAGTCGAGTACTCGACTTGACTCAGTTGTTTTTCAGCTTACTCCTACTAGAA CTAGGTGTGATCTTTTCATTATAGCCAATGACAAGAAAGAGAAAATAGCTTCTGGATTGC TTACTCCTTTTCTTGCTCACTTGAAAACTGCTCAGGATCAAATTGCAAAGGGTGGTTACT CAATTTTGCTGGAACCAGATGCTCACGCTGATGATTCATGGTTTACAAAGTGTACAGTGG AAAGGTTTGTCCGCTTTGTGAGCAATCCAGAGGTTTTGGAAAGGGTATACACCATTGAAT CTGAGATCTTGCAGATTGAGGAAGCAATAGCCCTTCAAGGAAACAATGATAGTGGGCAGG GGCCAGCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAGGTACTAAATCTACAG CAGATGTCAATGAGGAGAAAGCTATTGTTCTTTACAAGCCGGGGGAAGATCAACCTCAAA CAGATTTGCAGGAAGAAAATTCAAGAGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGT CTGTGCTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATA TTGATCGTATGACACAGATGGTATCATTTTCCGAATCTTTTGGTGCCTCACGCTTAAGAG ATGCATGTGTAAGATTTATGGAGCTGTGGAAGAAAAAGCATGAAAATGGACAATGGGTTG AAATTGAAGCTGCAGAAGCAATGGCAAATCAATTAGACATTGCTGCAATGAATGCATCTG GAATTCTGCTCTCTAATATTGCTAATAAGCAATTTGATTCCAACAGCGAGATGGCTTCTG AGAATTATGTGAAATCAAGCACAGATGGTAATTTAGGAGAAAGGCCTCCATTGGATCAAC AAAGTCCAAATGGTCAACAACAATATCAATTTCTGCATCCAATGTATCCACCGTGGCCAA TGCATTCTCCTCCCTCTGGCGTACCTGCTTTTCAAGGATATCCCATGCAAGGAGTACCTT ACTATCCAGCTTATCCAGGAAATGGACATCTCTATCAACCTCCTTATCCAGGAATGGAAG ACTCTCGAACGGGTGTCACTCCGCAGAGTAGAAAGAAAAAACAGTCTTCCGATAGGAGAG AGAGCAACAGCGATTCAGAGGAAGATGAAGAAATGGACAACGAAGGGTCTTATAGTCAGA GAAAGAAGGCTGGCCGGTCTAGGAAAAATCAATCAGGAAAGGTTGTTATACGTAACATTA ATTATATCACTTCTAAAGCAAAGAACTCTAATGATAGCGAATCAGAAGCAGCTTCTGGTT CGGAAAATGGTGCTGATAGTGAAGATCTAGAAGGCAACGGTCACGACCTGGTGAAAAAGG GAACTTCACGGTCATCAAAAACAAGACGGAGCCGCACTGAATCAATTTTATATGATGATG ACACTGTTTGTGAGAAGGAAGCTGATGGTGGGCACTGGCTGGCATTTCAAAATTGTTTAT TGAAAGGTAATGAAGATGACAAAGATGGCATGTTCGCAATGGAGAAAGATGCAAGGAGGA GACTAAAAAGTACCATTTCCGATGATCCTTTGGCTATTGGTTCCCAAGACGGCATTGAAA TGAAGGATAGGTTGAGTGATATGCATACAATTGGTGCAAAGATGTCTCGCATGTCTAGGG GTTCTAATGGTGAAGTCCTACTTTCTAGCAGAGGATATGATAATGGACAAGAACTTGGTG ACCACGTGGACATGCAGTTTACTGAGATAAATGGGAGAAAAATCATGCGTAGAACTGCAA ATGATGAATTTATGCTTAATGGTCGAGGAAATCAATCAGGGCTGAGAAATTCATTAGATC CGAATGCATATGAGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATATGACTGATG AGTCTTTTGTAGTACCTTTTAGGTCAATGTCATTGACTGACGTTGGACCAGATGGTAGAA CTGCCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTG CTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAA AAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTT CTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAA AATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTG GAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCAC GTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAGGAAG AGGCAGACCAAAAGCGCATTGAAGCATTAAAACTGGAAAGGCAAAAGAGAATCGCATCCA GAGGTGGCCCCAGCTCTGGTCATTCTCCAGCACCAACAATCCAAACAAGAAAATTGCCAG CAAAAAGCTCTCCTGGCACCTTCAGGGGATCCAAGTTCAGTGACTCAGAGCCTGGATCCT TGTCACCATTGCAAAGAACCAAAATAAGAACTCCGTTGGGGTCAAATGGTGTGCAGAAGG GCTCTAAAGCAAGCAAATCAACTGATGGCAGCAAATTGGCAGGTAACAAATTGAGTAGAT CAGCATCATCTTTGTCTGAACCAAAAAAAGAAAACAACGATGTTACTCCTGATTCAAAGG CATCCATGGCACGAATAAGAAGACTATCAGAGCCCAAAGCAATCAGCAGCAAGCCTGGTA CCTTACGGAAGGCGCAAAGTGCTGAACTTGTATCAAAGCCCAAGGCTCGGAGTGCCGAAC CAGTGTCTAAGACAAAGCGCTCTGATGTGCCAGAGAGCAAGAAAATATCTGCCATCATAG ACCTTGACAAAAAGAAGGCTGCAACTCTTCCTGAGCTGAAAATCCGAACCACCAAAGAGT CGTCAGATTTACGACAAGACAAACTAACTGCGGAGAATATAGCTACGGAGAAGAATGACA GGCCTTCTGTAGCATCTGAAGGCATTGAATCATACAAGAATGATCTAGATGAAAACATTA TTGAGAAAACTGTTGTTATGCTTGAGAAGGAGAAGAAACCCTCTTTGGCTGTTCCCAGTT CATCATCAGAGAACTTGGCTGTGGAAGAATGTGACAAGATTAACAGTGTTGAGAGAACTG ACTATGCCTCTACACGTGACCCACCGTCACCCTTTGAAGGATTTATTAGAGCACCTGTTC CTAGCCGACTGCAAGAGCTGTCAAATTCCCATGAGACAGGGACGAATTGTGCAGATGACA CACCCAAGTTTGCAAATATCGGAAGTACTGTTTATCGTGCTCCGTATGCTCGTGTCTCAT CTGTCGAGGACCCTTGTACCAGAAACTTGGAGTTTGCTAAAGCACTTCCATCAAGCTCAG ACACAGGATCAACAGTAAAAGAAATTGCCAAAGCTCATGCACCTGATATTCACACTGTTA GAGTAGATAACAATCCAGAAGCTGCAGAAAGGACTCAAGTGAAGGAATCACCAAAAGGTT TTAAACGCCTCCTGAGGTTTGGAAAGAAGAACCACATCTCTGGAGGAGCAGAATCAAATG GCGCAAACATGAATAGCATGAAGCAGGATGATAGTGTCACAAATGCTCCCTTGCCTAGTG AAGTTTTCACTTTGAAGAATTTGATCTCCCAAGATGAAACCCCAACTGCTAGCAATGTTT CACAGAAGTCTCGTCTCTCTTTGTTATCTCCCTTTCGAAGCAAGACTAGCGAGAAAAGGT GACAGCATTCAGTATCAAGATTATTCAAGTGCTCTGGTTGTCAGATGGAGGTGTGATTAG TCACAGCTGTTTATGACTTCCCAAAACAGTTTCTTTCGTAAATTTAGTTACTGTAAAGAT GTGTTGTGTTAAGATGAGAAATGTATATACTTTCGACTGTATGTCAACTTTCAATGTACT CTACAGTTTGGATTTAATAGTAGGTGTTTTGCAGTGAATCTTTTGCAAGTTCCTATTGTA TATTTACTGCTTCAAAGTATCAAAACTCTATTATCATTCATTTAGAATTTTCTTTGGCCA TCCATAAAAATATGCATTGAACAGTC