Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g059583.1.1
CDS Infomation

GPI transamidase component PIG-S-like protein (AHRD V3.3 *-* AT3G07180.2)
Sequence

ATGCCGGAAGGAGCTTCTCAGGATTCAGCCATGGCGGAGATCTCTGAAGCAACAACTTCC
TCCGATCCACTAAACACTAAGTCCGAAGTGGAAAATTTCGACCCTAAAACCATGCGTAAA
ACAAAGCCTGGATTGAAGCGTTTATTTCTCACTCTCACTGTCTTCATCTCTTTTCTCATC
GCTTTGCCTTTCTTACTTAAGTCCATAGAGATTTACCGAGCACCATTGCCTTTTGAAGAC
ATAGATTTACTTTCAACGGAAATGGAGAAGAATCATTCGGTGTTCCCTTGCCAATTTCAA
GCTGTTTTTGTGAACTTCGATGAGATTACTGCTGTAAATGAGCTTGGGCTTTTGATCGAT
TCTCATATGCAAAAACTGACCTCAGAAAATTCTCCACCTTGTGGTACGTGTGGGAACAAT
GTCACTGTGGCTGTAACAATTGATTCCAATTCCAACTGTATTCACAGGGAAAGTGGAAAT
GGCAACGGTAAATGGCAGTGTGGTATGTTGAATGGATTTGATAAGGTGAATGATCATGAT
GAGGATTTTGATGAGTATTTGGAGTCAGTATTGGATAGTACGAGTAGGAAGGTTTATACG
GTTGTGGTGATAAATAGGAAGCAGGAGGACGTTAGAATTGTTGTTGGAAAATATAGGCAT
GCTTGGATAGTAGGAAATGATTCCGTAGAGAAAGCTATTGAGAAAATGGCAGAGATTTTT
ATCAAAGTGTTTGTGAATGGTGGGAAGGAAGAAGGATCAATTCGAGGGGAATTCATGCCA
GTAGGTGCAGATGGCAAGGTCGTGCTTTCTTTCAGTCTTTTGAATTCTGATCCACATGAT
TGGGTTTATGATTGGGATTTTAAGGAGTTAGATGAGATTCTGCTGGCTCCCGTGGTCGAT
GCTTTAAGACCAGTAGCTGACATTAGTGTGGAAAGCCAGGTTCTATATCATACTCCAAAG
TCTTCATATTCATATTGGGATGACACACAGGGTAGCTATATTTTCAGTACAAAAGATCTT
CCTTTCTTTCAGGAGAGGATTGAAGAAACTCAGAGGGGAAAAGAAGCAGCTCGTTTAACT
CCTAAGGTTCCACAAACCAATGTAACAGTAACTGCATTGCAAGTGAAGGGAGGAACAAGT
AAAACCATTCTGGAAAGGAGCGTAGAAACATCTGGAGGTATCAGATCTGAGATGGGGGGA
GTGAATCAAGTAAAAACACTGGAAAGCATTGAGGCCCAACAGTTATGGGAGGAAAATACG
GAATCTGCAAATGTAAGCGGGAAATCACCAAGCACTGGGAGGAAATCCTGGGCAGGTAAG
TCTACTTATGTAGAAATTGAGCTTAATGATATAAGCTCTGAGGTAGAGTACTGGAAAAAC
TCAGTTGTTTGTTATGTTTCGGGAGCACATCCTCCATTTGAAGTGTTTAAGGGATTTATT
CAAAGAATTTGGGGACAACATGGTATAAACAAAATTGTTATGCTGATGAATGGAGTTGTT
ATGGTGCGAACTGATACAGAAATAGGGCAGCATGAGGTTATTCAAGCTGGAATCTACCAC
TTAGATAGTAAGCCATTCATCGTAAAGGCTTGGCATGCCGATATGGATTTTTCAAGAGAA
GAACTGCACACGGTGCCTACTTGGATCAAGCTTCCTCGCCTGGATTTTAAATATTGGAGT
CCAAAAGGATTGAGTAAGCTAGGAAGTTTAATTGGGAAACCTCTAATGGTGGACCAAAAT
ACTGAGAGAAAAATTGGATTGAATTTTGCTAGACTCATGGTGGAGGTCGACATGAATGCT
GCACTTCCCGATATAATAAACTTCAGGAATGAAAAGGGGCAACTGATAGAACAAAAAGTG
ACATATGAATTTTCTCAAAAAATAAAAATAAAATTGACATATGAATGGAAGTCAACCCTG
TGTACATATTGTAAGAAATATGGTCACTCAGAGGAGATTTGCAGGAAGAAAAATATGCCA
AGAAAAGAGAATAAGAAGAAGGATCTACCACAAAAAGAGGAGACCACTCAAGTTCCAGGA
CAAAGGATGGCAGGAAACAGTAAAGGAAAAGGAGTATCAGAAAAAGATAACAAGTATGGA
ACAAGCAAAAATTTCAGAATCCCAGATAGTAAAAGGAAGAAAGGACTCGTCACAGGAAGC
AGACAAAGAAGGCTGGATCACTCCAAGAAGGGTGGCTCATGCTTATCAGAATGGGAATGA

Peptide Sequence

PEP ID

Solyc09g059583.1.1
PEP Infomation

GPI transamidase component PIG-S-like protein (AHRD V3.3 *-* AT3G07180.2)
Sequence

MPEGASQDSAMAEISEATTSSDPLNTKSEVENFDPKTMRKTKPGLKRLFLTLTVFISFLI
ALPFLLKSIEIYRAPLPFEDIDLLSTEMEKNHSVFPCQFQAVFVNFDEITAVNELGLLID
SHMQKLTSENSPPCGTCGNNVTVAVTIDSNSNCIHRESGNGNGKWQCGMLNGFDKVNDHD
EDFDEYLESVLDSTSRKVYTVVVINRKQEDVRIVVGKYRHAWIVGNDSVEKAIEKMAEIF
IKVFVNGGKEEGSIRGEFMPVGADGKVVLSFSLLNSDPHDWVYDWDFKELDEILLAPVVD
ALRPVADISVESQVLYHTPKSSYSYWDDTQGSYIFSTKDLPFFQERIEETQRGKEAARLT
PKVPQTNVTVTALQVKGGTSKTILERSVETSGGIRSEMGGVNQVKTLESIEAQQLWEENT
ESANVSGKSPSTGRKSWAGKSTYVEIELNDISSEVEYWKNSVVCYVSGAHPPFEVFKGFI
QRIWGQHGINKIVMLMNGVVMVRTDTEIGQHEVIQAGIYHLDSKPFIVKAWHADMDFSRE
ELHTVPTWIKLPRLDFKYWSPKGLSKLGSLIGKPLMVDQNTERKIGLNFARLMVEVDMNA
ALPDIINFRNEKGQLIEQKVTYEFSQKIKIKLTYEWKSTLCTYCKKYGHSEEICRKKNMP
RKENKKKDLPQKEETTQVPGQRMAGNSKGKGVSEKDNKYGTSKNFRIPDSKRKKGLVTGS
RQRRLDHSKKGGSCLSEWE*

Transcript Sequence

Transcript ID

Solyc09g059583.1.1
Transcript Infomation

GPI transamidase component PIG-S-like protein (AHRD V3.3 *-* AT3G07180.2)
Sequence

CTCAATTCACACTGTGATGCCGGAAGGAGCTTCTCAGGATTCAGCCATGGCGGAGATCTC
TGAAGCAACAACTTCCTCCGATCCACTAAACACTAAGTCCGAAGTGGAAAATTTCGACCC
TAAAACCATGCGTAAAACAAAGCCTGGATTGAAGCGTTTATTTCTCACTCTCACTGTCTT
CATCTCTTTTCTCATCGCTTTGCCTTTCTTACTTAAGTCCATAGAGATTTACCGAGCACC
ATTGCCTTTTGAAGACATAGATTTACTTTCAACGGAAATGGAGAAGAATCATTCGGTGTT
CCCTTGCCAATTTCAAGCTGTTTTTGTGAACTTCGATGAGATTACTGCTGTAAATGAGCT
TGGGCTTTTGATCGATTCTCATATGCAAAAACTGACCTCAGAAAATTCTCCACCTTGTGG
TACGTGTGGGAACAATGTCACTGTGGCTGTAACAATTGATTCCAATTCCAACTGTATTCA
CAGGGAAAGTGGAAATGGCAACGGTAAATGGCAGTGTGGTATGTTGAATGGATTTGATAA
GGTGAATGATCATGATGAGGATTTTGATGAGTATTTGGAGTCAGTATTGGATAGTACGAG
TAGGAAGGTTTATACGGTTGTGGTGATAAATAGGAAGCAGGAGGACGTTAGAATTGTTGT
TGGAAAATATAGGCATGCTTGGATAGTAGGAAATGATTCCGTAGAGAAAGCTATTGAGAA
AATGGCAGAGATTTTTATCAAAGTGTTTGTGAATGGTGGGAAGGAAGAAGGATCAATTCG
AGGGGAATTCATGCCAGTAGGTGCAGATGGCAAGGTCGTGCTTTCTTTCAGTCTTTTGAA
TTCTGATCCACATGATTGGGTTTATGATTGGGATTTTAAGGAGTTAGATGAGATTCTGCT
GGCTCCCGTGGTCGATGCTTTAAGACCAGTAGCTGACATTAGTGTGGAAAGCCAGGTTCT
ATATCATACTCCAAAGTCTTCATATTCATATTGGGATGACACACAGGGTAGCTATATTTT
CAGTACAAAAGATCTTCCTTTCTTTCAGGAGAGGATTGAAGAAACTCAGAGGGGAAAAGA
AGCAGCTCGTTTAACTCCTAAGGTTCCACAAACCAATGTAACAGTAACTGCATTGCAAGT
GAAGGGAGGAACAAGTAAAACCATTCTGGAAAGGAGCGTAGAAACATCTGGAGGTATCAG
ATCTGAGATGGGGGGAGTGAATCAAGTAAAAACACTGGAAAGCATTGAGGCCCAACAGTT
ATGGGAGGAAAATACGGAATCTGCAAATGTAAGCGGGAAATCACCAAGCACTGGGAGGAA
ATCCTGGGCAGGTAAGTCTACTTATGTAGAAATTGAGCTTAATGATATAAGCTCTGAGGT
AGAGTACTGGAAAAACTCAGTTGTTTGTTATGTTTCGGGAGCACATCCTCCATTTGAAGT
GTTTAAGGGATTTATTCAAAGAATTTGGGGACAACATGGTATAAACAAAATTGTTATGCT
GATGAATGGAGTTGTTATGGTGCGAACTGATACAGAAATAGGGCAGCATGAGGTTATTCA
AGCTGGAATCTACCACTTAGATAGTAAGCCATTCATCGTAAAGGCTTGGCATGCCGATAT
GGATTTTTCAAGAGAAGAACTGCACACGGTGCCTACTTGGATCAAGCTTCCTCGCCTGGA
TTTTAAATATTGGAGTCCAAAAGGATTGAGTAAGCTAGGAAGTTTAATTGGGAAACCTCT
AATGGTGGACCAAAATACTGAGAGAAAAATTGGATTGAATTTTGCTAGACTCATGGTGGA
GGTCGACATGAATGCTGCACTTCCCGATATAATAAACTTCAGGAATGAAAAGGGGCAACT
GATAGAACAAAAAGTGACATATGAATTTTCTCAAAAAATAAAAATAAAATTGACATATGA
ATGGAAGTCAACCCTGTGTACATATTGTAAGAAATATGGTCACTCAGAGGAGATTTGCAG
GAAGAAAAATATGCCAAGAAAAGAGAATAAGAAGAAGGATCTACCACAAAAAGAGGAGAC
CACTCAAGTTCCAGGACAAAGGATGGCAGGAAACAGTAAAGGAAAAGGAGTATCAGAAAA
AGATAACAAGTATGGAACAAGCAAAAATTTCAGAATCCCAGATAGTAAAAGGAAGAAAGG
ACTCGTCACAGGAAGCAGACAAAGAAGGCTGGATCACTCCAAGAAGGGTGGCTCATGCTT
ATCAGAATGGGAATGA