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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g056260.3.1
CDS Infomation

tRNA pseudouridine synthase (AHRD V3.3 *** K4CTC1_SOLLC)
Sequence

ATGGCAGGACTTTGTGTGCGGCTTCCTCAAATCCCTCTCACAAATCTGAGATTTTTACGC
TCACGCACCCTAAAGATAGTGCTGTGCTCTTCGACATCATCTGTGGAAAGCAATAAATGG
GAACCTTTCATCAAAAAGAAAGTTGTGATGCGCGTGGGATACGTGGGTTCTGATTATCGA
GCCATTGAAGGTGAACTGGAAAAAGCTATCTTCAAAGCTGGTGGTATTCGAGAAAGTAAT
TTTGGAAATTTATATAAAATTGGCTGGGCGAGAAGTAGTCGAACCGATAAAGGAGTTCAT
TCCTTGGCGACAATGATATCTCTTAAAATGGAGATTCCTGCAGATGCATGGGAGGATGAT
CCAAATGGGATCACTCTTGCTAATTGCTTAGAAAATGATGTAGCAGTTATGGTTTTCTTT
TCGTGTCAGTTAGTTATTAGTAGGGTTCCTTCATTGTTGCATGATATTGGTCCATTTGAT
CATTTGCTAGTCTGTCTTCTGAGGTTTGATGCCAGAAGAGAGTGTAATGCACGCAAGTAT
TCTTATCTCATTCCTGCTGAAATCATCGGGATTAAGAATGATTCTGCTTCTTCTGAAATC
GAGTACCATATAGCCAATTTTAATGACATACTAAATTCTTTCGAGGGAGAACATCCTTTC
CACAATTACACAATACGATCCAAGTACAGAAAACAATCTCCTGCCAGAAACTTGTTAAAA
AATGACAGTCTCTTAAAAAAAGGGAGGCCCTCCAGTGAGGAAGAAATATCTGGGTCTGAG
GAAATTGATGGAGAACAAAACCGTAAAGAGCAGGGGGTTGTGACGATTGTTGAGGCTGAA
AATCAAAATGCAGAAGGCAACTGTAATTTGAAAGTTAGTCATTCAAAGGATCTTAATTCT
GTTATACCAATTCAAGCAAGATGGCTCCATGAACCCGATGCAAGAGATAAACTTAGCTCT
GCTCATTTCAGAAGGATTTTTCACTGTCATTGTGGAAAATTGGAGAAGTTGCTCGGCATG
AATTATGTTGAAGTTTCCATCTGTGGAGAGTCATTCATGTTACATCAAATACGCAAAATG
GTAGGGACAGCAGTTGCGATAAAACGCAATCTTCTACCACATGATACTTTGAGAATGTCG
TTATGCAAGTTTTCAAGGATTGTGTTACCCCTAGCCCCATCAGAAGTTTTGGTTTTGAAG
GGGAACAATTTTGCTTTGAGAAACCATCCAGGCAACATAATAAGACCTGAAATGTTGACA
TTGTTGGAATCAGACGATATTCTCAAAGCAGTTGATGACTTCTACTACTCTACATTGTTA
CCTCAGCTTTCTAGATTTTTAGACCCTTCAAAGTCCCCTTGGAGTGAGTGGGTAGAAATA
CTGGATGCAAACACAAGCATTCCAGATTATCAATTAGAAGAAGTAAGGGTTGCTTGGAAA
TTGTGGAAGGCACAGTATGATAGCAGAACTAAGTTTCCATCAGTATTGGCTCAAGAGTCT
GGTGTCGTATGA

Peptide Sequence

PEP ID

Solyc09g056260.3.1
PEP Infomation

tRNA pseudouridine synthase (AHRD V3.3 *** K4CTC1_SOLLC)
Sequence

MAGLCVRLPQIPLTNLRFLRSRTLKIVLCSSTSSVESNKWEPFIKKKVVMRVGYVGSDYR
AIEGELEKAIFKAGGIRESNFGNLYKIGWARSSRTDKGVHSLATMISLKMEIPADAWEDD
PNGITLANCLENDVAVMVFFSCQLVISRVPSLLHDIGPFDHLLVCLLRFDARRECNARKY
SYLIPAEIIGIKNDSASSEIEYHIANFNDILNSFEGEHPFHNYTIRSKYRKQSPARNLLK
NDSLLKKGRPSSEEEISGSEEIDGEQNRKEQGVVTIVEAENQNAEGNCNLKVSHSKDLNS
VIPIQARWLHEPDARDKLSSAHFRRIFHCHCGKLEKLLGMNYVEVSICGESFMLHQIRKM
VGTAVAIKRNLLPHDTLRMSLCKFSRIVLPLAPSEVLVLKGNNFALRNHPGNIIRPEMLT
LLESDDILKAVDDFYYSTLLPQLSRFLDPSKSPWSEWVEILDANTSIPDYQLEEVRVAWK
LWKAQYDSRTKFPSVLAQESGVV*

Transcript Sequence

Transcript ID

Solyc09g056260.3.1
Transcript Infomation

tRNA pseudouridine synthase (AHRD V3.3 *** K4CTC1_SOLLC)
Sequence

TTTGATACTTCCATTTAATTTTCTCGAGTTATTGTGGATAGTTGTGCGCGTCGGGTTAGT
CTGATGGCAGGACTTTGTGTGCGGCTTCCTCAAATCCCTCTCACAAATCTGAGATTTTTA
CGCTCACGCACCCTAAAGATAGTGCTGTGCTCTTCGACATCATCTGTGGAAAGCAATAAA
TGGGAACCTTTCATCAAAAAGAAAGTTGTGATGCGCGTGGGATACGTGGGTTCTGATTAT
CGAGCCATTGAAGGTGAACTGGAAAAAGCTATCTTCAAAGCTGGTGGTATTCGAGAAAGT
AATTTTGGAAATTTATATAAAATTGGCTGGGCGAGAAGTAGTCGAACCGATAAAGGAGTT
CATTCCTTGGCGACAATGATATCTCTTAAAATGGAGATTCCTGCAGATGCATGGGAGGAT
GATCCAAATGGGATCACTCTTGCTAATTGCTTAGAAAATGATGTAGCAGTTATGGTTTTC
TTTTCGTGTCAGTTAGTTATTAGTAGGGTTCCTTCATTGTTGCATGATATTGGTCCATTT
GATCATTTGCTAGTCTGTCTTCTGAGGTTTGATGCCAGAAGAGAGTGTAATGCACGCAAG
TATTCTTATCTCATTCCTGCTGAAATCATCGGGATTAAGAATGATTCTGCTTCTTCTGAA
ATCGAGTACCATATAGCCAATTTTAATGACATACTAAATTCTTTCGAGGGAGAACATCCT
TTCCACAATTACACAATACGATCCAAGTACAGAAAACAATCTCCTGCCAGAAACTTGTTA
AAAAATGACAGTCTCTTAAAAAAAGGGAGGCCCTCCAGTGAGGAAGAAATATCTGGGTCT
GAGGAAATTGATGGAGAACAAAACCGTAAAGAGCAGGGGGTTGTGACGATTGTTGAGGCT
GAAAATCAAAATGCAGAAGGCAACTGTAATTTGAAAGTTAGTCATTCAAAGGATCTTAAT
TCTGTTATACCAATTCAAGCAAGATGGCTCCATGAACCCGATGCAAGAGATAAACTTAGC
TCTGCTCATTTCAGAAGGATTTTTCACTGTCATTGTGGAAAATTGGAGAAGTTGCTCGGC
ATGAATTATGTTGAAGTTTCCATCTGTGGAGAGTCATTCATGTTACATCAAATACGCAAA
ATGGTAGGGACAGCAGTTGCGATAAAACGCAATCTTCTACCACATGATACTTTGAGAATG
TCGTTATGCAAGTTTTCAAGGATTGTGTTACCCCTAGCCCCATCAGAAGTTTTGGTTTTG
AAGGGGAACAATTTTGCTTTGAGAAACCATCCAGGCAACATAATAAGACCTGAAATGTTG
ACATTGTTGGAATCAGACGATATTCTCAAAGCAGTTGATGACTTCTACTACTCTACATTG
TTACCTCAGCTTTCTAGATTTTTAGACCCTTCAAAGTCCCCTTGGAGTGAGTGGGTAGAA
ATACTGGATGCAAACACAAGCATTCCAGATTATCAATTAGAAGAAGTAAGGGTTGCTTGG
AAATTGTGGAAGGCACAGTATGATAGCAGAACTAAGTTTCCATCAGTATTGGCTCAAGAG
TCTGGTGTCGTATGATGGTCAAATTGTTAAGAGCATCAATCAAAGATAAAACCTCTGTTT
GGTATTTGCTAAAACAAGGATGGAAATTGGCAACTTGGAGAAAAATGACCTTTTGGAAAG
TTACCGGTTTCAAAAAGAAAAAAGAAGAGAAAAATGACCTTTTGGGCATGCATGTCGACA
AGTCTGTTCCACAATCAAAATTATGACCACCAGACAACTAATACTCTCTGTACCTATTTG
GATATGCAATAATAACTCTAACTTGCCATTATCTTCACTTTTTCTTTTTCTTTTTATCAA
AGAAGAAACTAGTTTATTTATAGAACACAGGACAAATATTTTTGAACCAACTTTTCTTTT
ATAAATTCAAATACCATATAATTCTCATTCTCTCTCTAAGTTAAATAATGTAGGCTTACT
TATCAATGAGTAAAAACAAAAATTATTTTCAACAAAATGCTTATATGTATATACAAT