Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g055920.3.1
CDS Infomation

Poly(A)-specific ribonuclease PARN-like protein (AHRD V3.3 *** W9QZE5_9ROSA)
Sequence

ATGATACAGAGGCGGTTGTTTTGCTCGATGATATCGAATACCGTTGTCCAATCAAACCCT
GGACATAGCCAGAGCAAATGGAATGTAAAGCAAGTTACAAAATCCAACTTCTCAGCGGCA
TTAGAAGAGATACGCAATTGCATTTCCGACTCTGATTTCATTGCAATCTCATTGAAGAAT
ACCGGAGCGTACTCTGCACCCTGGCAACGTATTATGCCTATTGACACCGCCCGCACCGCC
TATCTCAAAGCCAAATACGCCGCCGAACGGTTTCAGGTCCTTCAGTTTGCCGTTTGCCCC
TTTTCCATAAAGGGTTCCAAGCTCATCGTGCACCCATATAACTTTCATTTGTTCCCTCGC
GATGAGTTAAAAATAGGGATGCCTTCTTATAGTTTCTCTTGTCAATCATCATACTTGACC
TCTATGTCTCAAGAAGGTTTTGATTTCAATGCCTGCATATATGATGGCATATCATATTTA
TCCAAATCACAAGAATCAGCCGCAGTAGATAGAATTGGAAATGCATCACCTATAAGCTGT
ACAGTTCAAACTCCATCAGGATATACAGTTGCTGATTCTGTATTTGCACAAAGGATCAAA
TCTCGAGTTAAGAATTGGATAACTGCTTGCAAAGACACAAACAAGAAGCCTGAAGATGCT
CTAATCAGTTCCTTGAGAAAAATTGTCTCGGGAGATGAAGTATATGGATCCAGACCTTGC
TTGAGCATAGATGTCTGCAGTGAACGCCAAGTACGCCTTGTGATGGAGACACTGAAAGAT
TTTGTTGACGTCATACCTTTACTAAACCCAGCAATGGGAGGAACAATAAGGCCTGTTCGA
GTTGTTTTGACAAGTTCAGAAGAAGACAGGATTCTTTTACAGAAGCAACTTCAAAATGAG
GAGGAGGAGCATAATAAGCGCCTCCGTGGCTTTCGAGAGGTGATCGATTTGATTTCCGCT
TCTCAGAAACCTGTAGTTGCCCACAACTCTCTTAATGATTTTACTTTCATTCATTCCAAG
TTCTTAGCTCCATTGCCATCAACGCTGGAAGAATTCAGAAGTTCATTATGTTTGGTCTTC
CCCAATGTACTTGATGTCAACCATCTTATGAACGAAATCAACCCTCAGACAAAAGTTAAC
AATTTGCCTGCATGTATTTCATATTTGAAACAACGGTTTTTTGCCCCTATTGATATAGAG
ATACCTAACCAAGCTGAGGTGAATGAAGTGAAGACTCTTGGACATGATGCTGTGAAGATA
AGCCAATTGTTCGCAAAGCTGTGCTCCATATTGAAAATTGCTCCAAGAACTCCTGAAGCT
GCTGAGGGCCATTTTCCTGATGCAATTGAATGCTACAGAAACTCGTACAACCCTTGCTTT
ACCAGCTCTCATGGTTCCGCTGATGAAGATGTTAGTGTGAGGACTGATAATACTAGAAAG
ATCAGTTGTAAAAATCTAGTTTTCCTATGGGGATTCAGGGGTATGACATCTGCAGGGAAG
CTGAAGAGCCTCCTATGTGGTTCACATGACGTTTTCCATGACTTTGATGTTAGGATGGTG
GATAAAAGTTGTGCAGTGGTTGCTTTCAGGAATCCTGGTTTTGCGGAAGTCCTGTTTCAG
CTAATGGACTCTGGAGGAATTTGCACTAAGACCCTGAAGGAGATGCTGGCAGATGGCCTG
ACAGCTGCAGGTTATGATACCTACCAGAAAGTCTGTGAGTTGGGTCTGTGGGAAGCAGAT
TTAGCAAGTTCCATGGAAAAGGCTTTGGGAGAAATTGAGAGCTTCTCAGAAGCACAGTCG
AAAGAGCTGTCAGGGATGTGTTGGAACAATGATGAAATGATTAACCTGGATGACCTTTAA

Peptide Sequence

PEP ID

Solyc09g055920.3.1
PEP Infomation

Poly(A)-specific ribonuclease PARN-like protein (AHRD V3.3 *** W9QZE5_9ROSA)
Sequence

MIQRRLFCSMISNTVVQSNPGHSQSKWNVKQVTKSNFSAALEEIRNCISDSDFIAISLKN
TGAYSAPWQRIMPIDTARTAYLKAKYAAERFQVLQFAVCPFSIKGSKLIVHPYNFHLFPR
DELKIGMPSYSFSCQSSYLTSMSQEGFDFNACIYDGISYLSKSQESAAVDRIGNASPISC
TVQTPSGYTVADSVFAQRIKSRVKNWITACKDTNKKPEDALISSLRKIVSGDEVYGSRPC
LSIDVCSERQVRLVMETLKDFVDVIPLLNPAMGGTIRPVRVVLTSSEEDRILLQKQLQNE
EEEHNKRLRGFREVIDLISASQKPVVAHNSLNDFTFIHSKFLAPLPSTLEEFRSSLCLVF
PNVLDVNHLMNEINPQTKVNNLPACISYLKQRFFAPIDIEIPNQAEVNEVKTLGHDAVKI
SQLFAKLCSILKIAPRTPEAAEGHFPDAIECYRNSYNPCFTSSHGSADEDVSVRTDNTRK
ISCKNLVFLWGFRGMTSAGKLKSLLCGSHDVFHDFDVRMVDKSCAVVAFRNPGFAEVLFQ
LMDSGGICTKTLKEMLADGLTAAGYDTYQKVCELGLWEADLASSMEKALGEIESFSEAQS
KELSGMCWNNDEMINLDDL*

Transcript Sequence

Transcript ID

Solyc09g055920.3.1
Transcript Infomation

Poly(A)-specific ribonuclease PARN-like protein (AHRD V3.3 *** W9QZE5_9ROSA)
Sequence

CAATTTTTCTCCCATAACTGGCCTGGTGGCGGACAACTGCGGTATCTGTCCTGCCGTTTC
CCGGAAAAGTCACACACTGTAGGTGTATATTCGTGTTTCAATGATACAGAGGCGGTTGTT
TTGCTCGATGATATCGAATACCGTTGTCCAATCAAACCCTGGACATAGCCAGAGCAAATG
GAATGTAAAGCAAGTTACAAAATCCAACTTCTCAGCGGCATTAGAAGAGATACGCAATTG
CATTTCCGACTCTGATTTCATTGCAATCTCATTGAAGAATACCGGAGCGTACTCTGCACC
CTGGCAACGTATTATGCCTATTGACACCGCCCGCACCGCCTATCTCAAAGCCAAATACGC
CGCCGAACGGTTTCAGGTCCTTCAGTTTGCCGTTTGCCCCTTTTCCATAAAGGGTTCCAA
GCTCATCGTGCACCCATATAACTTTCATTTGTTCCCTCGCGATGAGTTAAAAATAGGGAT
GCCTTCTTATAGTTTCTCTTGTCAATCATCATACTTGACCTCTATGTCTCAAGAAGGTTT
TGATTTCAATGCCTGCATATATGATGGCATATCATATTTATCCAAATCACAAGAATCAGC
CGCAGTAGATAGAATTGGAAATGCATCACCTATAAGCTGTACAGTTCAAACTCCATCAGG
ATATACAGTTGCTGATTCTGTATTTGCACAAAGGATCAAATCTCGAGTTAAGAATTGGAT
AACTGCTTGCAAAGACACAAACAAGAAGCCTGAAGATGCTCTAATCAGTTCCTTGAGAAA
AATTGTCTCGGGAGATGAAGTATATGGATCCAGACCTTGCTTGAGCATAGATGTCTGCAG
TGAACGCCAAGTACGCCTTGTGATGGAGACACTGAAAGATTTTGTTGACGTCATACCTTT
ACTAAACCCAGCAATGGGAGGAACAATAAGGCCTGTTCGAGTTGTTTTGACAAGTTCAGA
AGAAGACAGGATTCTTTTACAGAAGCAACTTCAAAATGAGGAGGAGGAGCATAATAAGCG
CCTCCGTGGCTTTCGAGAGGTGATCGATTTGATTTCCGCTTCTCAGAAACCTGTAGTTGC
CCACAACTCTCTTAATGATTTTACTTTCATTCATTCCAAGTTCTTAGCTCCATTGCCATC
AACGCTGGAAGAATTCAGAAGTTCATTATGTTTGGTCTTCCCCAATGTACTTGATGTCAA
CCATCTTATGAACGAAATCAACCCTCAGACAAAAGTTAACAATTTGCCTGCATGTATTTC
ATATTTGAAACAACGGTTTTTTGCCCCTATTGATATAGAGATACCTAACCAAGCTGAGGT
GAATGAAGTGAAGACTCTTGGACATGATGCTGTGAAGATAAGCCAATTGTTCGCAAAGCT
GTGCTCCATATTGAAAATTGCTCCAAGAACTCCTGAAGCTGCTGAGGGCCATTTTCCTGA
TGCAATTGAATGCTACAGAAACTCGTACAACCCTTGCTTTACCAGCTCTCATGGTTCCGC
TGATGAAGATGTTAGTGTGAGGACTGATAATACTAGAAAGATCAGTTGTAAAAATCTAGT
TTTCCTATGGGGATTCAGGGGTATGACATCTGCAGGGAAGCTGAAGAGCCTCCTATGTGG
TTCACATGACGTTTTCCATGACTTTGATGTTAGGATGGTGGATAAAAGTTGTGCAGTGGT
TGCTTTCAGGAATCCTGGTTTTGCGGAAGTCCTGTTTCAGCTAATGGACTCTGGAGGAAT
TTGCACTAAGACCCTGAAGGAGATGCTGGCAGATGGCCTGACAGCTGCAGGTTATGATAC
CTACCAGAAAGTCTGTGAGTTGGGTCTGTGGGAAGCAGATTTAGCAAGTTCCATGGAAAA
GGCTTTGGGAGAAATTGAGAGCTTCTCAGAAGCACAGTCGAAAGAGCTGTCAGGGATGTG
TTGGAACAATGATGAAATGATTAACCTGGATGACCTTTAAGATGCTTCATAAAGTTGAAT
CATATCTACCATTACCAAAGCCAAGACTGACTGATTTTGGTATGCCGGCTTTCATCATAT
ATGTTTTGTTGATTGTCCTAGTTGCTGCCATTGAGGATGTATGCAGGAAAGAAATTGATA
GTTGATGCATCAAATGGAGAGTGCTTTTCAGTGGCTATCATGGCAAACTAAGCCATTGTA
TATAAGTTGACATGTTCTCTTGGATTTATGGCATTTGCTTCTTAAGGCAATTACGTTTTT
GTTGACAAGGAGAGGCGTCTGTATTTTTTGGACAAGGAGATCAGAGGATAGCTGGTTTCC
GGAGGATTCTAAAGTAGAGTGCCATTATTTGGTGTCTCGAAACGGAAAGAGAAAATTTTT
GATATGGTCACTTGGCACTTAGCTAAGGGTAGTAAATTCTTGACCCCTAATATTGTTACC
ATGTTTCCAAGAAATTGGTTCACCCTCATTCTTGTATCATGAACTTTTGTGCTAAGGTGA
GGTTGCTTTGAAGAATTGAATGTTTGTACTAACTCCACCCTTAAATTATGCTCCTAATTC
AATGGCAAATATGGACTGTGCATTAATCCAACCATTTA