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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g013120.3.1
CDS Infomation

E3 ubiquitin-protein ligase Hakai (AHRD V3.3 *** A0A0B0MJ11_GOSAR)
Sequence

ATGCTTCAGATCCGTCTTAGCAAGCCAGCAAATGAGAGTGGCGGGTTGCCTCCTGAAACT
GTTACAGTTGCTTGTCCTGACCATCTTGTCATAGCTGATCTTCCGGTAGCCAAGAGCCTT
GGTACAGTAAATCCTGCATCTCTGCCCAAAACTGTTGGCCGGAGGTCCCGGCGACAGCTT
GCTGACCGAGTACATTTTTGCATCTGCTGTGACTTTCCAATTGCTGTTTATGGACGTCTG
AGTCCATGTGAACATATCTTCTGCTTAGATTGTGCCAGGACCGACTCTGTCTGCTACCTC
TGTGATGAACGCATTCAGAAGATCCAGACAATAAAAATGTTGGAAGGGGTCTACATCTGT
GCAGCTCCGCATTGTTTCAAGTCCTTTCTGAAGGAGACTGAGTTTGAATCTCATATTCAT
GAGACTCACAGTGATCTTCTTCGTTTAGAGAATGATGGGAACATTTCAGAATATGCCAGT
GCTAGAAAGCCTGCAGCATCTGAATCTACAGTGCAAGCAGCACCTAGGCCCATATTTTCT
CCTGGTTCAGGTTCCCAGGCACATGATCGGGAAGACAAAGGTCATCATTCTCAAACTAGA
GACCAACAGCTCCCTAGGCCTTTTATGCAACAAAAGCCACCTTTCACTGGTTCAATCCAA
AGTCAGCCACTAGATCAACAGTTTGATAGTAATCCTCCTCCAGGCTTTGAAAGGAACCGG
TTGCCTCAGCAAGGTTTTGATGCTCAGGGTTCATTTCCAGTGCACATGCCCCAACCTCAT
GGCTTTGCAGTGCCTGTGAGTTCGAATCCAGGCTTGGCTCATCAATTTGGTTATCCTCAG
TTTGCACCTGAGGGAGCCCAACCATTTTATGGTGCTGCTTCAGTTGAGATGCCTAGGCTA
GACTCAACTCCTGAAAGGGGATCAGAACAAGGGTCTTTGCTAGGTTTTCCACCTGGTGCT
GCAGGAAATAGGAATTTTCCAGAAAATTATCCTCGACCATGGAATATGGGGCAGTTGGCT
GGGCAGTCAAACCTGCCACTTCCGCTGTCAGCCAACAGAGGATTGGAAGGTGGACAGAGT
AGTAATTCCATGGACACCAGAGATAGCAAGGGTATATTGATGTCACAACCTGCGTCCCTC
CAGCCGCCCCTACCTCATCACAGGTCACAACTCCAAAGAGGGGGCAGAAACTATTCTGGT
GATTCAAGTCATGGTGGACAGGGCTATGGTTGGCAACATGAGAAACATGGTAATTTCAGA
AGCAACCAGGACTAG

Peptide Sequence

PEP ID

Solyc09g013120.3.1
PEP Infomation

E3 ubiquitin-protein ligase Hakai (AHRD V3.3 *** A0A0B0MJ11_GOSAR)
Sequence

MLQIRLSKPANESGGLPPETVTVACPDHLVIADLPVAKSLGTVNPASLPKTVGRRSRRQL
ADRVHFCICCDFPIAVYGRLSPCEHIFCLDCARTDSVCYLCDERIQKIQTIKMLEGVYIC
AAPHCFKSFLKETEFESHIHETHSDLLRLENDGNISEYASARKPAASESTVQAAPRPIFS
PGSGSQAHDREDKGHHSQTRDQQLPRPFMQQKPPFTGSIQSQPLDQQFDSNPPPGFERNR
LPQQGFDAQGSFPVHMPQPHGFAVPVSSNPGLAHQFGYPQFAPEGAQPFYGAASVEMPRL
DSTPERGSEQGSLLGFPPGAAGNRNFPENYPRPWNMGQLAGQSNLPLPLSANRGLEGGQS
SNSMDTRDSKGILMSQPASLQPPLPHHRSQLQRGGRNYSGDSSHGGQGYGWQHEKHGNFR
SNQD*

Transcript Sequence

Transcript ID

Solyc09g013120.3.1
Transcript Infomation

E3 ubiquitin-protein ligase Hakai (AHRD V3.3 *** A0A0B0MJ11_GOSAR)
Sequence

AGAATAACGGGACAAACACCTCTCTTCTTTGATAATCTCCAAAAAATATTTCCATTAACA
CATAACTTATAAGAAAGTGAAACATCAAAGTCTATGTGTTTCAACATATAAAAATAACAT
GACGAACACCTTTTTCTTCGATAATCTCCAAAAAGATATTTCAATAAACACATAACTTAT
ATGTAAAAATAAAAATAACGGGACGAACACCTCTCTTCTTCGATAATTTCAAAAAAAACA
TTGCAGTTAACTTACAACTTATATGTAGTGTATATATAAGAATTACGATTACATGTATCT
CTAACTTGTTTTATTAATAAAATATTTAAGGACATAAAATCGATTAATATTTTATAGATA
TAGATGGATGATATGCATATAAATACAGTTGTTTCAATTATTTTGGGCGCTTAACCCTAG
AACCGCCTGAAGTAGGGTGGAGAAGCAGAGTTCATCGGAAAAAGATGCTTCAGATCCGTC
TTAGCAAGCCAGCAAATGAGAGTGGCGGGTTGCCTCCTGAAACTGTTACAGTTGCTTGTC
CTGACCATCTTGTCATAGCTGATCTTCCGGTAGCCAAGAGCCTTGGTACAGTAAATCCTG
CATCTCTGCCCAAAACTGTTGGCCGGAGGTCCCGGCGACAGCTTGCTGACCGAGTACATT
TTTGCATCTGCTGTGACTTTCCAATTGCTGTTTATGGACGTCTGAGTCCATGTGAACATA
TCTTCTGCTTAGATTGTGCCAGGACCGACTCTGTCTGCTACCTCTGTGATGAACGCATTC
AGAAGATCCAGACAATAAAAATGTTGGAAGGGGTCTACATCTGTGCAGCTCCGCATTGTT
TCAAGTCCTTTCTGAAGGAGACTGAGTTTGAATCTCATATTCATGAGACTCACAGTGATC
TTCTTCGTTTAGAGAATGATGGGAACATTTCAGAATATGCCAGTGCTAGAAAGCCTGCAG
CATCTGAATCTACAGTGCAAGCAGCACCTAGGCCCATATTTTCTCCTGGTTCAGGTTCCC
AGGCACATGATCGGGAAGACAAAGGTCATCATTCTCAAACTAGAGACCAACAGCTCCCTA
GGCCTTTTATGCAACAAAAGCCACCTTTCACTGGTTCAATCCAAAGTCAGCCACTAGATC
AACAGTTTGATAGTAATCCTCCTCCAGGCTTTGAAAGGAACCGGTTGCCTCAGCAAGGTT
TTGATGCTCAGGGTTCATTTCCAGTGCACATGCCCCAACCTCATGGCTTTGCAGTGCCTG
TGAGTTCGAATCCAGGCTTGGCTCATCAATTTGGTTATCCTCAGTTTGCACCTGAGGGAG
CCCAACCATTTTATGGTGCTGCTTCAGTTGAGATGCCTAGGCTAGACTCAACTCCTGAAA
GGGGATCAGAACAAGGGTCTTTGCTAGGTTTTCCACCTGGTGCTGCAGGAAATAGGAATT
TTCCAGAAAATTATCCTCGACCATGGAATATGGGGCAGTTGGCTGGGCAGTCAAACCTGC
CACTTCCGCTGTCAGCCAACAGAGGATTGGAAGGTGGACAGAGTAGTAATTCCATGGACA
CCAGAGATAGCAAGGGTATATTGATGTCACAACCTGCGTCCCTCCAGCCGCCCCTACCTC
ATCACAGGTCACAACTCCAAAGAGGGGGCAGAAACTATTCTGGTGATTCAAGTCATGGTG
GACAGGGCTATGGTTGGCAACATGAGAAACATGGTAATTTCAGAAGCAACCAGGACTAGT
TATGTTCTTGTCATCCGGCCATCTTTTCTTTTGAAAGAACAGTTGCGCATTTTGTTATTG
CCTAGAGACTGCAGTGTATTTTACTTTCTAAACTAGCAACAATGTTTTGTTAAAAGCTGA
AACAGTACCTAGCTTCTTGTTCAAACAGTAGCATGGATGTCTTCTGCTTGAGAAGTCATT
CAAGATTTGCAGCTTCTTCTAAATTGAGGCCAGTAATTACATATTTGAACTATTTTCCTG
AAGTATCCATGCATTCTCAATTATAGTAGTATATATGCAAACTTCATTTAACAATATGAT
ATATTACTGTAGTTCAATCATACATATCTATCATGTTGCAAGCTTACAACTTGGTCAAGA
CCAACTTACAATAGTTAGCTCTGCAATAAAATGGATGTACATAACCAATCGATCTACAAC
GCTTCAATCCCAGACTAGTCTTTCGTATCCATTTAAGTTCTTTGTCTTGGTTCCAATTCA
AGAAATGTTTGTACACAATATGTCCAAATTACAATCTCTCATATCTTGGTGACCTTTGCT
CGCCATTCACTTCCGTCGAGAAAGAGAAAAAAAGGGAAAGAAAACAAGATATATGGCAAA
GGTTATTGAAACCCCAAAACAACCTTACCCCAATCCCTTCTTTTTAAAAAAAGAAGTTGA
AAAAAAAACTTCAACACAAATAGAGAAAATGGTTTTAGCTTAATTTCTTCTTTTCCAAAC
TTAATCTTGAAACCTTG